com.compomics.util.experiment.io.identifications
Interface IdfileReader
- All Known Implementing Classes:
- MascotIdfileReader, OMSSAIdfileReader, XTandemIdfileReader
public interface IdfileReader
This interface will retrieve spectrum matches from any identification file.
Created by IntelliJ IDEA.
User: Marc
Date: Jun 23, 2010
Time: 9:44:07 AM
Field Summary |
static String |
DECOY_FLAG
the flag in a protein sequence for a decoy hit. |
DECOY_FLAG
static final String DECOY_FLAG
- the flag in a protein sequence for a decoy hit. This ough not to be hard coded.
- See Also:
- Constant Field Values
getAllSpectrumMatches
HashSet<SpectrumMatch> getAllSpectrumMatches()
- This methods retrieves all the identifications from an identification
file as a list of spectrum matches
- Returns:
- a list of spectrum matches
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