Uses of Class
com.compomics.util.experiment.biology.Sample

Packages that use Sample
com.compomics.util.experiment This package contains MSExperiment main class. 
com.compomics.util.experiment.biology This package contains experiement classes related to biological entities. 
com.compomics.util.experiment.quantification.reporterion This package contains experiment classes related to reporter ions. 
 

Uses of Sample in com.compomics.util.experiment
 

Methods in com.compomics.util.experiment that return Sample
 Sample MsExperiment.getSample(int id)
          Returns a single sample accessed by its index
 

Methods in com.compomics.util.experiment that return types with arguments of type Sample
 HashMap<Integer,Sample> MsExperiment.getSamples()
          Returns the implemented samples
 

Methods in com.compomics.util.experiment with parameters of type Sample
 void MsExperiment.addAnalysisSet(Sample sample, SampleAnalysisSet analysisSet)
          Method to link an analysis set to an experiment
 SampleAnalysisSet MsExperiment.getAnalysisSet(Sample sample)
          Returns the analysis set corresponding to a sample
 void MsExperiment.setSample(int index, Sample sample)
          Set a new sample
 

Constructors in com.compomics.util.experiment with parameters of type Sample
SampleAnalysisSet(Sample referenceSample, ArrayList<ProteomicAnalysis> replicates)
          Contructor for a set of analysis of a sample
SampleAnalysisSet(Sample referenceSample, ProteomicAnalysis replicate)
          Contructor for an analysis of a sample without replicates
 

Constructor parameters in com.compomics.util.experiment with type arguments of type Sample
MsExperiment(String reference, HashMap<Integer,Sample> samples)
          Constructor for an experiment
 

Uses of Sample in com.compomics.util.experiment.biology
 

Methods in com.compomics.util.experiment.biology with parameters of type Sample
 boolean Sample.isSameAs(Sample otherSample)
          Comparator for samples.
 

Uses of Sample in com.compomics.util.experiment.quantification.reporterion
 

Methods in com.compomics.util.experiment.quantification.reporterion that return Sample
 Sample ReporterIonQuantification.getSample(int reporterIndex)
          This method returns the sample associated to the given ion
 

Methods in com.compomics.util.experiment.quantification.reporterion with parameters of type Sample
 void ReporterIonQuantification.assignSample(int reporterIndex, Sample sample)
          assign a sample to an ion referenced by its static index
 Integer ReporterIonQuantification.getReporterIndex(Sample aSample)
          This method returns the ion associated to the given sample
 



Copyright © 2011. All Rights Reserved.