com.compomics.util.experiment.biology
Class Ion

java.lang.Object
  extended by com.compomics.util.experiment.personalization.ExperimentObject
      extended by com.compomics.util.experiment.biology.Ion
All Implemented Interfaces:
Serializable, Cloneable
Direct Known Subclasses:
Glycon, PeptideFragmentIon, ReporterIon

public abstract class Ion
extends ExperimentObject

This class models an ion. Created by IntelliJ IDEA. User: Marc Date: Jun 18, 2010 Time: 8:57:33 AM

See Also:
Serialized Form

Field Summary
protected  int familyType
          Ion attribute - the ion family name
static int GLYCON_FRAGMENT
          Ion family type static index for glycons
static int PEPTIDE_FRAGMENT
          Ion family type static index for peptide fragments
static int REPORTER_ION
          Ion family type static index for glycons
 double theoreticMass
          Ion attribute - the theoretic mass
 
Constructor Summary
Ion()
           
 
Method Summary
 int getIonFamilyType()
          getter for the ion family name
 
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject
addUrParam, getUrParam
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

PEPTIDE_FRAGMENT

public static final int PEPTIDE_FRAGMENT
Ion family type static index for peptide fragments

See Also:
Constant Field Values

GLYCON_FRAGMENT

public static final int GLYCON_FRAGMENT
Ion family type static index for glycons

See Also:
Constant Field Values

REPORTER_ION

public static final int REPORTER_ION
Ion family type static index for glycons

See Also:
Constant Field Values

theoreticMass

public double theoreticMass
Ion attribute - the theoretic mass


familyType

protected int familyType
Ion attribute - the ion family name

Constructor Detail

Ion

public Ion()
Method Detail

getIonFamilyType

public int getIonFamilyType()
getter for the ion family name

Returns:
the ion family name as indexed in static field


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