Uses of Class
com.compomics.util.experiment.identification.matches.PeptideMatch

Packages that use PeptideMatch
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.experiment.identification.matches This package contains experiment classes releated to matches. e.g., pepties, proteins, modifications and spectra. 
 

Uses of PeptideMatch in com.compomics.util.experiment.identification
 

Fields in com.compomics.util.experiment.identification with type parameters of type PeptideMatch
protected  HashMap<String,PeptideMatch> Identification.peptideIdentification
          The identification results as a peptide match map, indexed by peptide index
 

Methods in com.compomics.util.experiment.identification that return types with arguments of type PeptideMatch
 HashMap<String,PeptideMatch> Identification.getPeptideIdentification()
          Returns the identification results in a peptide identification map (peptide index -> peptideMatch)
 

Uses of PeptideMatch in com.compomics.util.experiment.identification.matches
 

Methods in com.compomics.util.experiment.identification.matches that return types with arguments of type PeptideMatch
 HashMap<String,PeptideMatch> ProteinMatch.getPeptideMatches()
          getter for the peptide matches
 

Methods in com.compomics.util.experiment.identification.matches with parameters of type PeptideMatch
 void ProteinMatch.addPeptideMatch(PeptideMatch peptideMatch)
          add a subordinated peptide match
 

Constructors in com.compomics.util.experiment.identification.matches with parameters of type PeptideMatch
ProteinMatch(PeptideMatch peptideMatch)
          Constructor for the protein match
 



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