Uses of Class
com.compomics.util.protein.Protein

Packages that use Protein
com.compomics.util.nucleotide The classes in this package concern useful Objects and their operations for modelling and handling nucleotides. 
com.compomics.util.protein The classes in this package concern useful Objects and their operations for modelling and handling proteins. 
 

Uses of Protein in com.compomics.util.nucleotide
 

Methods in com.compomics.util.nucleotide that return Protein
 Protein[] NucleotideSequence.translate()
          This method translates the nucleotide sequence in six reading frames.
 

Uses of Protein in com.compomics.util.protein
 

Methods in com.compomics.util.protein that return Protein
 Protein[] RegExEnzyme.cleave(Protein aProtein)
           
 Protein[] Enzyme.cleave(Protein aProtein)
          This method is the focus of the Enzyme instance.
 Protein[] DualEnzyme.cleave(Protein aProtein)
          This method is the focus of the Enzyme instance.
 Protein[] Enzyme.cleave(Protein aProtein, int minPeptideLength, int maxPeptideLength)
          This method is the focus of the Enzyme instance.
 Protein Protein.getCTermTruncatedProtein(int aSize)
          This method truncates the sequence for this protein on the C-terminus to the requested size.
 Protein Protein.getNTermTruncatedProtein(int aSize)
          This method truncates the sequence for this protein on the N-terminus to the requested size.
 Protein[] DualEnzyme.oldCleave(Protein aProtein)
          This cleave method will proces sequence XDYRZ solely into YR peptides.
 

Methods in com.compomics.util.protein with parameters of type Protein
 Protein[] RegExEnzyme.cleave(Protein aProtein)
           
 Protein[] Enzyme.cleave(Protein aProtein)
          This method is the focus of the Enzyme instance.
 Protein[] DualEnzyme.cleave(Protein aProtein)
          This method is the focus of the Enzyme instance.
 Protein[] Enzyme.cleave(Protein aProtein, int minPeptideLength, int maxPeptideLength)
          This method is the focus of the Enzyme instance.
 Protein[] DualEnzyme.oldCleave(Protein aProtein)
          This cleave method will proces sequence XDYRZ solely into YR peptides.
 



Copyright © 2011. All Rights Reserved.