com.compomics.util.experiment.identification
Class SpectrumAnnotator.SpectrumAnnotationMap
java.lang.Object
com.compomics.util.experiment.identification.SpectrumAnnotator.SpectrumAnnotationMap
- Enclosing class:
- SpectrumAnnotator
public class SpectrumAnnotator.SpectrumAnnotationMap
- extends Object
A support class for "hiding" the HashMap inside an object for easier
use in other methods. Should not normally be created on its own, but
rather created using the annotateSpectrum method in the SpectrumAnnotation
class.
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
SpectrumAnnotator.SpectrumAnnotationMap
public SpectrumAnnotator.SpectrumAnnotationMap(HashMap<String,HashMap<Integer,IonMatch>> annotations)
- Create a new SpectrumAnnotationMap. Should not normally be used
directly, but rather created using the annotateSpectrum method in
the SpectrumAnnotation class.
- Parameters:
annotations
- a HashMap of the annotations
getAnnotations
public HashMap<String,HashMap<Integer,IonMatch>> getAnnotations()
- Returns the actual annotations "hidden" inside the SpectrumAnnotationMap
object. HashMap structure: ion type -> charge -> ion match
- Returns:
- a HashMap of the annotations
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