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Packages that use Header | |
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com.compomics.util.experiment.identification | This package contains experiment classes related to identifications. |
com.compomics.util.nucleotide | The classes in this package concern useful Objects and their operations for modelling and handling nucleotides. |
com.compomics.util.protein | The classes in this package concern useful Objects and their operations for modelling and handling proteins. |
Uses of Header in com.compomics.util.experiment.identification |
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Methods in com.compomics.util.experiment.identification that return Header | |
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Header |
SequenceDataBase.getProteinHeader(String proteinKey)
Returns the protein header of the desired protein. |
Uses of Header in com.compomics.util.nucleotide |
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Methods in com.compomics.util.nucleotide that return Header | |
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Header |
NucleotideSequence.getHeader()
This method reports on the nucleotide header. |
Methods in com.compomics.util.nucleotide with parameters of type Header | |
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void |
NucleotideSequence.setHeader(Header aHeader)
This method sets the header. |
Constructors in com.compomics.util.nucleotide with parameters of type Header | |
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NucleotideSequence(Header aHeader,
NucleotideSequenceImpl aSequence)
This constructor allows the passing of a Header, as well as an AASequenceImpl for this Protein. |
Uses of Header in com.compomics.util.protein |
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Methods in com.compomics.util.protein that return Header | |
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Header |
Protein.getHeader()
This method reports on the header for the current protein. |
static Header |
Header.parseFromFASTA(String aFASTAHeader)
Factory method that constructs a Header instance based on a FASTA header line. |
Methods in com.compomics.util.protein with parameters of type Header | |
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void |
Protein.setHeader(Header aHeader)
Simple setter for the header. |
Constructors in com.compomics.util.protein with parameters of type Header | |
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Protein(Header aHeader,
AASequenceImpl aSequence)
This constructor allows the passing of a Header, as well as an AASequenceImpl for this Protein. |
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Protein(Header aHeader,
AASequenceImpl aSequence,
boolean aTruncated,
int aTruncationPosition)
This constructor allows the passing of a Header, as well as an AASequenceImpl for this Protein. |
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