Uses of Package
com.compomics.util.experiment.massspectrometry

Packages that use com.compomics.util.experiment.massspectrometry
com.compomics.util.experiment This package contains MSExperiment main class. 
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.experiment.identification.matches This package contains experiment classes releated to matches. e.g., pepties, proteins, modifications and spectra. 
com.compomics.util.experiment.io.identifications   
com.compomics.util.experiment.io.identifications.idfilereaders This package contains experiment classes related to reading search engine files. 
com.compomics.util.experiment.io.massspectrometry   
com.compomics.util.experiment.massspectrometry This package contains experiment classes related to spectra. 
com.compomics.util.gui.spectrum This package contains GUI classes related to Spectrum and Chromatogram visualization. 
 

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment
SpectrumCollection
          This class represents a collection of spectra acquired during a proteomicAnalysis
 

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.identification
Charge
          This class models a charge.
MSnSpectrum
          This class models an MSn spectrum.
Peak
          This class represents a peak.
 

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.identification.matches
Charge
          This class models a charge.
Peak
          This class represents a peak.
 

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.io.identifications
SpectrumCollection
          This class represents a collection of spectra acquired during a proteomicAnalysis
 

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.io.identifications.idfilereaders
SpectrumCollection
          This class represents a collection of spectra acquired during a proteomicAnalysis
 

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.io.massspectrometry
MSnSpectrum
          This class models an MSn spectrum.
 

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.massspectrometry
Charge
          This class models a charge.
MSnSpectrum
          This class models an MSn spectrum.
Peak
          This class represents a peak.
Precursor
          This class modilizes the precursor.
Spectrum
          This class models a spectrum
 

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.gui.spectrum
MSnSpectrum
          This class models an MSn spectrum.
 



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