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Packages that use DefaultSpectrumAnnotation | |
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com.compomics.util.experiment.identification | This package contains experiment classes related to identifications. |
com.compomics.util.gui.spectrum | This package contains GUI classes related to Spectrum and Chromatogram visualization. |
Uses of DefaultSpectrumAnnotation in com.compomics.util.experiment.identification |
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Methods in com.compomics.util.experiment.identification that return types with arguments of type DefaultSpectrumAnnotation | |
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Vector<DefaultSpectrumAnnotation> |
SpectrumAnnotator.getSpectrumAnnotations(Peptide peptide,
MSnSpectrum spectrum,
double massTolerance,
double intensityLimit)
Annotates a spectrum and returns the annotations as a vector of DefaultSpectrumAnnotation that can be added to a SpectrumPanel. |
Vector<DefaultSpectrumAnnotation> |
SpectrumAnnotator.getSpectrumAnnotations(SpectrumAnnotator.SpectrumAnnotationMap annotations)
Annotates a spectrum and returns the annotations as a vector of DefaultSpectrumAnnotation that can be added to a SpectrumPanel. |
Uses of DefaultSpectrumAnnotation in com.compomics.util.gui.spectrum |
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Methods in com.compomics.util.gui.spectrum that return types with arguments of type DefaultSpectrumAnnotation | |
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static Vector<DefaultSpectrumAnnotation> |
SpectrumPanel.filterAnnotations(Vector<DefaultSpectrumAnnotation> annotations,
ArrayList<PeptideFragmentIon.PeptideFragmentIonType> fragmentIonTypes,
boolean h2oLossSelected,
boolean nh3LossSelected,
boolean singleChargeSelected,
boolean doubleChargeSelected,
boolean moreThanTwoChargesSelected)
Filters the annotations and returns the annotations matching the currently selected types. |
Method parameters in com.compomics.util.gui.spectrum with type arguments of type DefaultSpectrumAnnotation | |
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static Vector<DefaultSpectrumAnnotation> |
SpectrumPanel.filterAnnotations(Vector<DefaultSpectrumAnnotation> annotations,
ArrayList<PeptideFragmentIon.PeptideFragmentIonType> fragmentIonTypes,
boolean h2oLossSelected,
boolean nh3LossSelected,
boolean singleChargeSelected,
boolean doubleChargeSelected,
boolean moreThanTwoChargesSelected)
Filters the annotations and returns the annotations matching the currently selected types. |
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