Uses of Class
com.compomics.util.experiment.massspectrometry.SpectrumCollection

Packages that use SpectrumCollection
com.compomics.util.experiment This package contains MSExperiment main class. 
com.compomics.util.experiment.io.identifications   
com.compomics.util.experiment.io.identifications.idfilereaders This package contains experiment classes related to reading search engine files. 
 

Uses of SpectrumCollection in com.compomics.util.experiment
 

Methods in com.compomics.util.experiment that return SpectrumCollection
 SpectrumCollection ProteomicAnalysis.getSpectrumCollection()
          Returns the spectrum collection of the analysis
 

Uses of SpectrumCollection in com.compomics.util.experiment.io.identifications
 

Methods in com.compomics.util.experiment.io.identifications with parameters of type SpectrumCollection
 IdfileReader IdfileReaderFactory.getFileReader(File aFile, SpectrumCollection spectrumCollection)
          This method returns the proper identification file reader depending on the format of the provided file.
 

Uses of SpectrumCollection in com.compomics.util.experiment.io.identifications.idfilereaders
 

Constructors in com.compomics.util.experiment.io.identifications.idfilereaders with parameters of type SpectrumCollection
MascotIdfileReader(File aFile, SpectrumCollection spectrumCollection)
          Constructor for the MascotIdilereader with a spectrum collection to put spectrum information in
OMSSAIdfileReader(File idFile, SpectrumCollection spectrumCollection)
          Constructor for the reader with a spectrum collection where to put spectrum information in.
XTandemIdfileReader(File aFile, SpectrumCollection spectrumCollection)
          constructor for the reader with a spectrum collection where to put spectrum identification in
 



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