Uses of Class
com.compomics.util.gui.spectrum.DefaultSpectrumAnnotation

Packages that use DefaultSpectrumAnnotation
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.gui.spectrum This package contains GUI classes related to Spectrum and Chromatogram visualization. 
 

Uses of DefaultSpectrumAnnotation in com.compomics.util.experiment.identification
 

Methods in com.compomics.util.experiment.identification that return types with arguments of type DefaultSpectrumAnnotation
 Vector<DefaultSpectrumAnnotation> SpectrumAnnotator.getSpectrumAnnotations(Peptide peptide, MSnSpectrum spectrum, double massTolerance, double intensityLimit)
          Annotates a spectrum and returns the annotations as a vector of DefaultSpectrumAnnotation that can be added to a SpectrumPanel.
 Vector<DefaultSpectrumAnnotation> SpectrumAnnotator.getSpectrumAnnotations(SpectrumAnnotator.SpectrumAnnotationMap annotations)
          Annotates a spectrum and returns the annotations as a vector of DefaultSpectrumAnnotation that can be added to a SpectrumPanel.
 

Uses of DefaultSpectrumAnnotation in com.compomics.util.gui.spectrum
 

Methods in com.compomics.util.gui.spectrum that return types with arguments of type DefaultSpectrumAnnotation
static Vector<DefaultSpectrumAnnotation> SpectrumPanel.filterAnnotations(Vector<DefaultSpectrumAnnotation> annotations, ArrayList<PeptideFragmentIon.PeptideFragmentIonType> fragmentIonTypes, boolean h2oLossSelected, boolean nh3LossSelected, boolean singleChargeSelected, boolean doubleChargeSelected, boolean moreThanTwoChargesSelected)
          Filters the annotations and returns the annotations matching the currently selected types.
 

Method parameters in com.compomics.util.gui.spectrum with type arguments of type DefaultSpectrumAnnotation
static Vector<DefaultSpectrumAnnotation> SpectrumPanel.filterAnnotations(Vector<DefaultSpectrumAnnotation> annotations, ArrayList<PeptideFragmentIon.PeptideFragmentIonType> fragmentIonTypes, boolean h2oLossSelected, boolean nh3LossSelected, boolean singleChargeSelected, boolean doubleChargeSelected, boolean moreThanTwoChargesSelected)
          Filters the annotations and returns the annotations matching the currently selected types.
 



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