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java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.io.identifications.idfilereaders.OMSSAIdfileReader
public class OMSSAIdfileReader
This reader will import identifications from an OMSSA omx file. Created by IntelliJ IDEA. User: Marc Date: Jun 23, 2010 Time: 9:45:45 AM
Constructor Summary | |
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OMSSAIdfileReader()
constructor for the reader |
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OMSSAIdfileReader(File idFile)
Constructor for the reader |
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OMSSAIdfileReader(File idFile,
SpectrumCollection spectrumCollection)
Constructor for the reader with a spectrum collection where to put spectrum information in. |
Method Summary | |
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HashSet<SpectrumMatch> |
getAllSpectrumMatches()
returns all spectrum matches found in the inspected file |
String |
getFileName()
get the file name |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
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addUrParam, getUrParam |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public OMSSAIdfileReader()
public OMSSAIdfileReader(File idFile)
idFile
- the inspected filepublic OMSSAIdfileReader(File idFile, SpectrumCollection spectrumCollection)
idFile
- the inspected filespectrumCollection
- the spectrum collection usedMethod Detail |
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public String getFileName()
public HashSet<SpectrumMatch> getAllSpectrumMatches()
getAllSpectrumMatches
in interface IdfileReader
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