Uses of Class
com.compomics.util.gui.spectrum.DefaultSpectrumAnnotation

Packages that use DefaultSpectrumAnnotation
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.gui.spectrum This package contains GUI classes related to Spectrum and Chromatogram visualization. 
 

Uses of DefaultSpectrumAnnotation in com.compomics.util.experiment.identification
 

Methods in com.compomics.util.experiment.identification that return types with arguments of type DefaultSpectrumAnnotation
static Vector<DefaultSpectrumAnnotation> SpectrumAnnotator.getSpectrumAnnotation(ArrayList<IonMatch> ionMatches)
          Translates the list of ion matches into a vector of annotations which can be read by the SpectrumPAnel
 

Uses of DefaultSpectrumAnnotation in com.compomics.util.gui.spectrum
 

Methods in com.compomics.util.gui.spectrum that return types with arguments of type DefaultSpectrumAnnotation
static Vector<DefaultSpectrumAnnotation> SpectrumPanel.filterAnnotations(Vector<DefaultSpectrumAnnotation> annotations, ArrayList<PeptideFragmentIon.PeptideFragmentIonType> fragmentIonTypes, ArrayList<NeutralLoss> neutralLosses, boolean singleChargeSelected, boolean doubleChargeSelected, boolean moreThanTwoChargesSelected)
          Deprecated. Filtering of annotations should not be necessary anymore.
 

Method parameters in com.compomics.util.gui.spectrum with type arguments of type DefaultSpectrumAnnotation
static Vector<DefaultSpectrumAnnotation> SpectrumPanel.filterAnnotations(Vector<DefaultSpectrumAnnotation> annotations, ArrayList<PeptideFragmentIon.PeptideFragmentIonType> fragmentIonTypes, ArrayList<NeutralLoss> neutralLosses, boolean singleChargeSelected, boolean doubleChargeSelected, boolean moreThanTwoChargesSelected)
          Deprecated. Filtering of annotations should not be necessary anymore.
 



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