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java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.ProteomicAnalysis
public class ProteomicAnalysis
This class models a proteomic analysis. User: Marc Date: Sep 1, 2010 Time: 10:11:18 AM
Constructor Summary | |
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ProteomicAnalysis(int index)
constructor for a proteomic analysis |
Method Summary | |
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void |
addIdentificationResults(int identificationMethod,
Identification identificationResults)
Adds identification results obtained with an identification method |
void |
addQuantificationResults(int quantificationMethod,
Quantification quantificationResutls)
adds quantification results to the current analysis |
void |
clearSpectrumCollection()
Clears the spectrum collection of the analysis |
Identification |
getIdentification(int identificationMethod)
Returns identification results obtained with an identification method |
int |
getIndex()
get the index of the replicate |
Quantification |
getQuantification(int quantificationMethod)
returns quantification results obtain with a quantification method |
SequenceDataBase |
getSequenceDataBase()
Returns the sequence database used for identification |
SpectrumCollection |
getSpectrumCollection()
Returns the spectrum collection of the analysis |
void |
setSequenceDataBase(SequenceDataBase sequenceDataBase)
Sets the sequence database used for identification |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
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addUrParam, getUrParam |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public ProteomicAnalysis(int index)
index
- the index of the replicateMethod Detail |
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public int getIndex()
public void addQuantificationResults(int quantificationMethod, Quantification quantificationResutls)
quantificationMethod
- the quantification method usedquantificationResutls
- the quantification resutlspublic Quantification getQuantification(int quantificationMethod)
quantificationMethod
- the quantification method used
public void addIdentificationResults(int identificationMethod, Identification identificationResults)
identificationMethod
- the identification method usedidentificationResults
- the identification resutls obtainedpublic Identification getIdentification(int identificationMethod)
identificationMethod
- the identification method used
public SpectrumCollection getSpectrumCollection()
public void clearSpectrumCollection()
public SequenceDataBase getSequenceDataBase()
public void setSequenceDataBase(SequenceDataBase sequenceDataBase)
sequenceDataBase
- the sequence database used for identification
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