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java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.io.identifications.idfilereaders.XTandemIdfileReader
public class XTandemIdfileReader
This reader will import identifications from an X!Tandem xml result file.
Created by IntelliJ IDEA. User: Marc Date: Jun 23, 2010 Time: 9:45:54 AM
Constructor Summary | |
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XTandemIdfileReader()
Constructor for the reader |
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XTandemIdfileReader(File aFile)
constructor for the reader |
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XTandemIdfileReader(File aFile,
SpectrumCollection spectrumCollection)
constructor for the reader with a spectrum collection where to put spectrum identification in |
Method Summary | |
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HashSet<SpectrumMatch> |
getAllSpectrumMatches()
Method which returns all spectrum matches found in the file. |
String |
getFileName()
getter for the file name |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
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addUrParam, getUrParam |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public XTandemIdfileReader()
public XTandemIdfileReader(File aFile) throws SAXException
aFile
- the inspected file
SAXException
public XTandemIdfileReader(File aFile, SpectrumCollection spectrumCollection) throws SAXException
aFile
- the inspected filespectrumCollection
- the spectrum collection used
SAXException
Method Detail |
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public String getFileName()
public HashSet<SpectrumMatch> getAllSpectrumMatches()
getAllSpectrumMatches
in interface IdfileReader
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