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Packages that use SpectrumCollection | |
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com.compomics.util.experiment | This package contains MSExperiment main class and all sub-classes useful for the modeling of an experiment. |
com.compomics.util.experiment.io.identifications | |
com.compomics.util.experiment.io.identifications.idfilereaders | This package contains experiment classes related to reading search engine files. |
Uses of SpectrumCollection in com.compomics.util.experiment |
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Methods in com.compomics.util.experiment that return SpectrumCollection | |
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SpectrumCollection |
ProteomicAnalysis.getSpectrumCollection()
Returns the spectrum collection of the analysis |
Uses of SpectrumCollection in com.compomics.util.experiment.io.identifications |
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Methods in com.compomics.util.experiment.io.identifications with parameters of type SpectrumCollection | |
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IdfileReader |
IdfileReaderFactory.getFileReader(File aFile,
SpectrumCollection spectrumCollection)
This method returns the proper identification file reader depending on the format of the provided file. |
Uses of SpectrumCollection in com.compomics.util.experiment.io.identifications.idfilereaders |
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Constructors in com.compomics.util.experiment.io.identifications.idfilereaders with parameters of type SpectrumCollection | |
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MascotIdfileReader(File aFile,
SpectrumCollection spectrumCollection)
Constructor for the MascotIdilereader with a spectrum collection to put spectrum information in |
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OMSSAIdfileReader(File idFile,
SpectrumCollection spectrumCollection)
Constructor for the reader with a spectrum collection where to put spectrum information in. |
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XTandemIdfileReader(File aFile,
SpectrumCollection spectrumCollection)
constructor for the reader with a spectrum collection where to put spectrum identification in |
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