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Packages that use ProteinMatch | |
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com.compomics.util.experiment.identification | This package contains experiment classes related to identifications. |
com.compomics.util.experiment.identification.matches | This package contains experiment classes releated to matches. e.g., pepties, proteins, modifications and spectra. |
Uses of ProteinMatch in com.compomics.util.experiment.identification |
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Fields in com.compomics.util.experiment.identification with type parameters of type ProteinMatch | |
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protected HashMap<String,ProteinMatch> |
Identification.proteinIdentification
The identification results as a proteine match map, indexed by protein accession. |
protected HashMap<String,ArrayList<ProteinMatch>> |
Identification.proteinMap
a map linking protein accessions to all their protein matches |
Methods in com.compomics.util.experiment.identification that return types with arguments of type ProteinMatch | |
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HashMap<String,ProteinMatch> |
Identification.getProteinIdentification()
Returns the identification results associated to the corresponding method in a protein identification map (accession -> protein match). |
HashMap<String,ArrayList<ProteinMatch>> |
Identification.getProteinMap()
Returns a map of all the protein matches which can be ascribed to a protein indexed by its accession. |
Uses of ProteinMatch in com.compomics.util.experiment.identification.matches |
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Methods in com.compomics.util.experiment.identification.matches that return ProteinMatch | |
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ProteinMatch |
ProteinMatch.getComplementMatch(ProteinMatch proteinMatch)
returns a proteinMatch complementary to the protein match given Example: if the protein match was identified on proteins A, B and C; if the given match was identified on A; the method returns a protein match with B and C. |
Methods in com.compomics.util.experiment.identification.matches with parameters of type ProteinMatch | |
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boolean |
ProteinMatch.contains(ProteinMatch proteinMatch)
Returns a boolean indicating whether the protein match contains another set of theoretic proteins. |
ProteinMatch |
ProteinMatch.getComplementMatch(ProteinMatch proteinMatch)
returns a proteinMatch complementary to the protein match given Example: if the protein match was identified on proteins A, B and C; if the given match was identified on A; the method returns a protein match with B and C. |
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