Uses of Class
com.compomics.util.experiment.identification.SearchParameters

Packages that use SearchParameters
com.compomics.util.experiment.biology This package contains experiement classes related to biological entities. 
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.experiment.io.identifications   
 

Uses of SearchParameters in com.compomics.util.experiment.biology
 

Methods in com.compomics.util.experiment.biology with parameters of type SearchParameters
 ArrayList<String> PTMFactory.loadBackedUpModifications(SearchParameters searchParameters, boolean overwrite)
          Verifies that the modifications backed-up in the search parameters are loaded and alerts the user in case conflicts are found.
 

Uses of SearchParameters in com.compomics.util.experiment.identification
 

Methods in com.compomics.util.experiment.identification that return SearchParameters
static SearchParameters SearchParameters.getIdentificationParameters(File file)
          Loads the identification parameters from a serialized file.
 

Methods in com.compomics.util.experiment.identification with parameters of type SearchParameters
static void SearchParameters.saveIdentificationParameters(SearchParameters identificationParameters, File file)
          saves the a modification profile from a serialized file.
 

Uses of SearchParameters in com.compomics.util.experiment.io.identifications
 

Methods in com.compomics.util.experiment.io.identifications that return SearchParameters
static SearchParameters IdentificationParametersReader.getSearchParameters(Properties aProps)
          Deprecated. Conversion methods which converts an old school set of identification properties into a SearchParameters instance.
 



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