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java.lang.Objectcom.compomics.util.experiment.identification.ptm.PtmtableContent
public class PtmtableContent
Convenience class for the content of a ptm table
Constructor Summary | |
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PtmtableContent()
Constructor. |
Method Summary | |
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void |
addAll(PtmtableContent anotherContent)
Add all. |
void |
addIntensity(int nMod,
java.lang.Integer peptideFragmentIonType,
int aa,
double intensity)
Add intensity. |
int[] |
getHistogram(int nMod,
java.lang.Integer peptideFragmentIonType,
int aa,
int bins)
Get histogram. |
java.util.ArrayList<java.lang.Double> |
getIntensities(int nMod,
java.lang.Integer peptideFragmentIonType,
int aa)
Get intensity. |
java.util.HashMap<java.lang.Integer,java.util.HashMap<java.lang.Integer,java.util.HashMap<java.lang.Integer,java.util.ArrayList<java.lang.Double>>>> |
getMap()
Get the map. |
double |
getMaxIntensity()
Returns the max intensity. |
java.lang.Double |
getQuantile(int nMod,
java.lang.Integer peptideFragmentIonType,
int aa,
double quantile)
Get the quantile. |
void |
normalize()
Normalize intesities. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public PtmtableContent()
Method Detail |
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public void addIntensity(int nMod, java.lang.Integer peptideFragmentIonType, int aa, double intensity)
nMod
- peptideFragmentIonType
- aa
- intensity
- public java.util.ArrayList<java.lang.Double> getIntensities(int nMod, java.lang.Integer peptideFragmentIonType, int aa)
nMod
- peptideFragmentIonType
- aa
-
public java.lang.Double getQuantile(int nMod, java.lang.Integer peptideFragmentIonType, int aa, double quantile)
nMod
- peptideFragmentIonType
- aa
- quantile
-
public int[] getHistogram(int nMod, java.lang.Integer peptideFragmentIonType, int aa, int bins)
nMod
- peptideFragmentIonType
- aa
- bins
-
public java.util.HashMap<java.lang.Integer,java.util.HashMap<java.lang.Integer,java.util.HashMap<java.lang.Integer,java.util.ArrayList<java.lang.Double>>>> getMap()
public void addAll(PtmtableContent anotherContent)
anotherContent
- public void normalize()
public double getMaxIntensity()
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