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Packages that use ReporterIon | |
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com.compomics.util.experiment.biology | This package contains experiement classes related to biological entities. |
com.compomics.util.experiment.biology.ions | This package contains experiment classes related to ions. |
com.compomics.util.experiment.quantification.reporterion | This package contains experiment classes related to reporter ions. |
Uses of ReporterIon in com.compomics.util.experiment.biology |
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Methods in com.compomics.util.experiment.biology that return types with arguments of type ReporterIon | |
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java.util.ArrayList<ReporterIon> |
PTM.getReporterIons()
Returns the reporter ions possibly encountered with this modification. |
Methods in com.compomics.util.experiment.biology with parameters of type ReporterIon | |
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void |
PTM.addReporterIon(ReporterIon reporterIon)
Adds a reporter ion. |
Method parameters in com.compomics.util.experiment.biology with type arguments of type ReporterIon | |
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void |
PTM.setReporterIons(java.util.ArrayList<ReporterIon> reporterIons)
Sets the reporter ions possibly encountered with this modification. |
Uses of ReporterIon in com.compomics.util.experiment.biology.ions |
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Fields in com.compomics.util.experiment.biology.ions declared as ReporterIon | |
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static ReporterIon |
ReporterIon.iTRAQ113
Standard reporter ion iTRAQ 113. |
static ReporterIon |
ReporterIon.iTRAQ114
Standard reporter ion iTRAQ 114. |
static ReporterIon |
ReporterIon.iTRAQ115
Standard reporter ion iTRAQ 115. |
static ReporterIon |
ReporterIon.iTRAQ116
Standard reporter ion iTRAQ 116. |
static ReporterIon |
ReporterIon.iTRAQ117
Standard reporter ion iTRAQ 117. |
static ReporterIon |
ReporterIon.iTRAQ118
Standard reporter ion iTRAQ 118. |
static ReporterIon |
ReporterIon.iTRAQ119
Standard reporter ion iTRAQ 119. |
static ReporterIon |
ReporterIon.iTRAQ121
Standard reporter ion iTRAQ 121. |
static ReporterIon |
ReporterIon.TMT0
Standard reporter ion TMT0. |
static ReporterIon |
ReporterIon.TMT1
Standard reporter ion TMT1. |
static ReporterIon |
ReporterIon.TMT2
Standard reporter ion TMT2. |
static ReporterIon |
ReporterIon.TMT3
Standard reporter ion TMT3. |
static ReporterIon |
ReporterIon.TMT4
Standard reporter ion TMT4. |
static ReporterIon |
ReporterIon.TMT5
Standard reporter ion TMT5. |
Methods in com.compomics.util.experiment.biology.ions with parameters of type ReporterIon | |
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boolean |
ReporterIon.isSameAs(ReporterIon anotherReporterIon)
Compares the current reporter ion with another one based on their masses. |
Uses of ReporterIon in com.compomics.util.experiment.quantification.reporterion |
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Methods in com.compomics.util.experiment.quantification.reporterion that return types with arguments of type ReporterIon | |
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java.util.ArrayList<ReporterIon> |
ReporterMethod.getReporterIons()
Returns the reporter ions used. |
Constructor parameters in com.compomics.util.experiment.quantification.reporterion with type arguments of type ReporterIon | |
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ReporterMethod(java.lang.String name,
java.util.ArrayList<ReporterIon> reporterIons,
java.util.ArrayList<CorrectionFactor> correctionFactors)
Constructor for a reporter method. |
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