Uses of Class
com.compomics.util.experiment.identification.matches.ModificationMatch

Packages that use ModificationMatch
com.compomics.util.experiment.biology This package contains experiement classes related to biological entities. 
 

Uses of ModificationMatch in com.compomics.util.experiment.biology
 

Methods in com.compomics.util.experiment.biology that return types with arguments of type ModificationMatch
 java.util.ArrayList<ModificationMatch> Peptide.getModificationMatches()
          Getter for the modifications carried by this peptide.
 

Methods in com.compomics.util.experiment.biology with parameters of type ModificationMatch
 void Peptide.addModificationMatch(ModificationMatch modificationMatch)
          Adds a modification match.
 

Constructor parameters in com.compomics.util.experiment.biology with type arguments of type ModificationMatch
Peptide(java.lang.String aSequence, java.util.ArrayList<java.lang.String> parentProteins, java.util.ArrayList<ModificationMatch> modifications)
          Constructor for the peptide.
Peptide(java.lang.String aSequence, java.lang.Double mass, java.util.ArrayList<java.lang.String> parentProteins, java.util.ArrayList<ModificationMatch> modifications)
          Deprecated. use the constructor without mass. The mass will be recalculated.
 



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