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Packages that use Sample | |
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com.compomics.util.experiment | This package contains MSExperiment main class and all sub-classes useful for the modeling of an experiment. |
com.compomics.util.experiment.biology | This package contains experiement classes related to biological entities. |
com.compomics.util.experiment.quantification.reporterion | This package contains experiment classes related to reporter ions. |
Uses of Sample in com.compomics.util.experiment |
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Methods in com.compomics.util.experiment that return Sample | |
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Sample |
MsExperiment.getSample(int id)
Returns a single sample accessed by its index |
Methods in com.compomics.util.experiment that return types with arguments of type Sample | |
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java.util.HashMap<java.lang.Integer,Sample> |
MsExperiment.getSamples()
Returns the implemented samples |
Methods in com.compomics.util.experiment with parameters of type Sample | |
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void |
MsExperiment.addAnalysisSet(Sample sample,
SampleAnalysisSet analysisSet)
Method to link an analysis set to an experiment |
SampleAnalysisSet |
MsExperiment.getAnalysisSet(Sample sample)
Returns the analysis set corresponding to a sample |
void |
MsExperiment.setSample(int index,
Sample sample)
Set a new sample |
Constructors in com.compomics.util.experiment with parameters of type Sample | |
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SampleAnalysisSet(Sample referenceSample,
java.util.ArrayList<ProteomicAnalysis> replicates)
Contructor for a set of analysis of a sample |
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SampleAnalysisSet(Sample referenceSample,
ProteomicAnalysis replicate)
Contructor for an analysis of a sample without replicates |
Constructor parameters in com.compomics.util.experiment with type arguments of type Sample | |
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MsExperiment(java.lang.String reference,
java.util.HashMap<java.lang.Integer,Sample> samples)
Constructor for an experiment |
Uses of Sample in com.compomics.util.experiment.biology |
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Methods in com.compomics.util.experiment.biology with parameters of type Sample | |
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boolean |
Sample.isSameAs(Sample otherSample)
Comparator for samples. |
Uses of Sample in com.compomics.util.experiment.quantification.reporterion |
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Methods in com.compomics.util.experiment.quantification.reporterion that return Sample | |
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Sample |
ReporterIonQuantification.getSample(int reporterIndex)
This method returns the sample associated to the given ion. |
Methods in com.compomics.util.experiment.quantification.reporterion with parameters of type Sample | |
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void |
ReporterIonQuantification.assignSample(int reporterIndex,
Sample sample)
Assign a sample to an ion referenced by its static index. |
java.lang.Integer |
ReporterIonQuantification.getReporterIndex(Sample aSample)
This method returns the ion associated to the given sample. |
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