Uses of Class
com.compomics.util.experiment.identification.Identification

Packages that use Identification
com.compomics.util.experiment This package contains MSExperiment main class and all sub-classes useful for the modeling of an experiment. 
com.compomics.util.experiment.identification.identifications This package contains experiment classes related to MS/MS identifications. 
com.compomics.util.experiment.quantification This package contains experiment classes related to quantification. 
 

Uses of Identification in com.compomics.util.experiment
 

Methods in com.compomics.util.experiment that return Identification
 Identification ProteomicAnalysis.getIdentification(int identificationMethod)
          Returns identification results obtained with an identification method
 

Methods in com.compomics.util.experiment with parameters of type Identification
 void ProteomicAnalysis.addIdentificationResults(int identificationMethod, Identification identificationResults)
          Adds identification results obtained with an identification method
 

Uses of Identification in com.compomics.util.experiment.identification.identifications
 

Subclasses of Identification in com.compomics.util.experiment.identification.identifications
 class Ms2Identification
          This class models an Ms2 Identification.
 

Uses of Identification in com.compomics.util.experiment.quantification
 

Methods in com.compomics.util.experiment.quantification with parameters of type Identification
 void Quantification.buildPeptidesAndProteinQuantifications(Identification identification, WaitingHandler waitingHandler)
          Creates the peptides and protein quantification instances based on the identification and the psm quantification.
 



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