Uses of Class
com.compomics.util.experiment.identification.matches.SpectrumMatch

Packages that use SpectrumMatch
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.experiment.io.identifications   
com.compomics.util.experiment.io.identifications.idfilereaders This package contains experiment classes related to reading search engine files. 
 

Uses of SpectrumMatch in com.compomics.util.experiment.identification
 

Methods in com.compomics.util.experiment.identification that return SpectrumMatch
 SpectrumMatch IdentificationDB.getSpectrumMatch(java.lang.String key)
          Returns the desired spectrum match.
 SpectrumMatch Identification.getSpectrumMatch(java.lang.String spectrumKey)
          Returns a spectrum match.
 

Methods in com.compomics.util.experiment.identification with parameters of type SpectrumMatch
 void IdentificationDB.addSpectrumMatch(SpectrumMatch spectrumMatch)
          Adds a spectrum match to the database.
 void Identification.addSpectrumMatch(SpectrumMatch newMatch)
          Adds a spectrum match to the identification.
 void IdentificationDB.updateSpectrumMatch(SpectrumMatch spectrumMatch)
          Updates a spectrum match.
 void Identification.updateSpectrumMatch(SpectrumMatch spectrumMatch)
          Updates a spectrum match in the database.
 

Method parameters in com.compomics.util.experiment.identification with type arguments of type SpectrumMatch
 void Identification.addSpectrumMatch(java.util.Set<SpectrumMatch> spectrumMatches)
          Add a set of spectrumMatches to the model.
 

Uses of SpectrumMatch in com.compomics.util.experiment.io.identifications
 

Methods in com.compomics.util.experiment.io.identifications that return types with arguments of type SpectrumMatch
 java.util.HashSet<SpectrumMatch> IdfileReader.getAllSpectrumMatches(WaitingHandler waitingHandler)
          This methods retrieves all the identifications from an identification file as a list of spectrum matches It is very important to close the file reader after creation.
 

Uses of SpectrumMatch in com.compomics.util.experiment.io.identifications.idfilereaders
 

Methods in com.compomics.util.experiment.io.identifications.idfilereaders that return types with arguments of type SpectrumMatch
 java.util.HashSet<SpectrumMatch> AndromedaIdfileReader.getAllSpectrumMatches(WaitingHandler waitingHandler)
           
 



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