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Packages that use SearchParameters | |
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com.compomics.util.experiment.biology | This package contains experiement classes related to biological entities. |
com.compomics.util.experiment.identification | This package contains experiment classes related to identifications. |
com.compomics.util.experiment.io.identifications | |
com.compomics.util.preferences |
Uses of SearchParameters in com.compomics.util.experiment.biology |
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Methods in com.compomics.util.experiment.biology with parameters of type SearchParameters | |
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java.util.ArrayList<java.lang.String> |
PTMFactory.loadBackedUpModifications(SearchParameters searchParameters,
boolean overwrite)
Verifies that the modifications backed-up in the search parameters are loaded and alerts the user in case conflicts are found. |
Uses of SearchParameters in com.compomics.util.experiment.identification |
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Methods in com.compomics.util.experiment.identification that return SearchParameters | |
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static SearchParameters |
SearchParameters.getIdentificationParameters(java.io.File file)
Loads the identification parameters from a serialized file. |
Methods in com.compomics.util.experiment.identification with parameters of type SearchParameters | |
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static void |
SearchParameters.saveIdentificationParameters(SearchParameters identificationParameters,
java.io.File file)
Saves the identification parameters to a serialized file. |
Uses of SearchParameters in com.compomics.util.experiment.io.identifications |
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Methods in com.compomics.util.experiment.io.identifications that return SearchParameters | |
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static SearchParameters |
IdentificationParametersReader.getSearchParameters(java.util.Properties aProps,
java.io.File userModsFile)
Deprecated. Conversion methods which converts an old school set of identification properties into a SearchParameters instance. |
Uses of SearchParameters in com.compomics.util.preferences |
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Methods in com.compomics.util.preferences with parameters of type SearchParameters | |
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void |
AnnotationPreferences.setPreferencesFromSearchParamaers(SearchParameters searchParameters)
Updates the annotation parameters based on the search parameters |
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