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Packages that use PeptideFragmentIon | |
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com.compomics.util.experiment.identification.ptm |
Uses of PeptideFragmentIon in com.compomics.util.experiment.identification.ptm |
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Methods in com.compomics.util.experiment.identification.ptm that return types with arguments of type PeptideFragmentIon | |
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static java.util.HashMap<PeptideFragmentIon,java.util.ArrayList<IonMatch>> |
PTMLocationScores.getPTMPlotData(Peptide peptide,
PTM ptm,
int nPTM,
MSnSpectrum spectrum,
java.util.HashMap<Ion.IonType,java.util.ArrayList<java.lang.Integer>> iontypes,
NeutralLossesMap neutralLosses,
java.util.ArrayList<java.lang.Integer> charges,
int precursorCharge,
double mzTolerance,
double intensityLimit)
Returns the ptm plot series in the jfreechart format for one psm. |
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