Uses of Class
com.compomics.util.experiment.biology.ions.PeptideFragmentIon

Packages that use PeptideFragmentIon
com.compomics.util.experiment.identification.ptm   
 

Uses of PeptideFragmentIon in com.compomics.util.experiment.identification.ptm
 

Methods in com.compomics.util.experiment.identification.ptm that return types with arguments of type PeptideFragmentIon
static java.util.HashMap<PeptideFragmentIon,java.util.ArrayList<IonMatch>> PTMLocationScores.getPTMPlotData(Peptide peptide, PTM ptm, int nPTM, MSnSpectrum spectrum, java.util.HashMap<Ion.IonType,java.util.ArrayList<java.lang.Integer>> iontypes, NeutralLossesMap neutralLosses, java.util.ArrayList<java.lang.Integer> charges, int precursorCharge, double mzTolerance, double intensityLimit)
          Returns the ptm plot series in the jfreechart format for one psm.
 



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