com.compomics.util.experiment
Class ProteomicAnalysis

java.lang.Object
  extended by com.compomics.util.experiment.personalization.ExperimentObject
      extended by com.compomics.util.experiment.ProteomicAnalysis
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable

public class ProteomicAnalysis
extends ExperimentObject

This class models a proteomic analysis. User: Marc Date: Sep 1, 2010 Time: 10:11:18 AM

See Also:
Serialized Form

Constructor Summary
ProteomicAnalysis(int index)
          constructor for a proteomic analysis
 
Method Summary
 void addIdentificationResults(int identificationMethod, Identification identificationResults)
          Adds identification results obtained with an identification method
 void addQuantificationResults(Quantification.QuantificationMethod quantificationMethod, Quantification quantificationResutls)
          adds quantification results to the current analysis
 Identification getIdentification(int identificationMethod)
          Returns identification results obtained with an identification method
 int getIndex()
          get the index of the replicate
 Quantification getQuantification(Quantification.QuantificationMethod quantificationMethod)
          returns quantification results obtain with a quantification method
 
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject
addUrParam, getParameterKey, getUrParam
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

ProteomicAnalysis

public ProteomicAnalysis(int index)
constructor for a proteomic analysis

Parameters:
index - the index of the replicate
Method Detail

getIndex

public int getIndex()
get the index of the replicate

Returns:
the index of the replicate

addQuantificationResults

public void addQuantificationResults(Quantification.QuantificationMethod quantificationMethod,
                                     Quantification quantificationResutls)
adds quantification results to the current analysis

Parameters:
quantificationMethod - the quantification method used
quantificationResutls - the quantification resutls

getQuantification

public Quantification getQuantification(Quantification.QuantificationMethod quantificationMethod)
returns quantification results obtain with a quantification method

Parameters:
quantificationMethod - the quantification method used
Returns:
the quantification resutls

addIdentificationResults

public void addIdentificationResults(int identificationMethod,
                                     Identification identificationResults)
Adds identification results obtained with an identification method

Parameters:
identificationMethod - the identification method used
identificationResults - the identification resutls obtained

getIdentification

public Identification getIdentification(int identificationMethod)
Returns identification results obtained with an identification method

Parameters:
identificationMethod - the identification method used
Returns:
the identification results


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