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java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.quantification.QuantificationMatch
com.compomics.util.experiment.quantification.matches.ProteinQuantification
public class ProteinQuantification
This class models the quantification of a protein.
Nested Class Summary |
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Nested classes/interfaces inherited from class com.compomics.util.experiment.quantification.QuantificationMatch |
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QuantificationMatch.MatchType |
Field Summary |
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Fields inherited from class com.compomics.util.experiment.quantification.QuantificationMatch |
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ratios |
Constructor Summary | |
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ProteinQuantification(java.lang.String proteinKey)
Constructor for the protein quantification |
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ProteinQuantification(java.lang.String proteinKey,
java.util.ArrayList<java.lang.String> peptideQuantification)
Constructor for the protein quantification |
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ProteinQuantification(java.lang.String proteinKey,
java.util.ArrayList<java.lang.String> peptideQuantification,
java.util.HashMap<java.lang.Integer,Ratio> proteinRatios)
Constructor for the protein quantification |
Method Summary | |
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void |
addPeptideQuantification(java.lang.String newPeptideQuantification)
Adds a new peptide quantification in the protein quantification |
java.lang.String |
getKey()
Returns the key of a match. |
java.util.ArrayList<java.lang.String> |
getPeptideQuantification()
Getter for the corresponding peptide quantification |
QuantificationMatch.MatchType |
getType()
Returns the type of a match |
Methods inherited from class com.compomics.util.experiment.quantification.QuantificationMatch |
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addRatio, getRatios, setRatios |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
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addUrParam, getParameterKey, getUrParam |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public ProteinQuantification(java.lang.String proteinKey)
proteinKey
- the identified protein match keypublic ProteinQuantification(java.lang.String proteinKey, java.util.ArrayList<java.lang.String> peptideQuantification)
proteinKey
- the identified protein match keypeptideQuantification
- the corresponding peptide quantificationpublic ProteinQuantification(java.lang.String proteinKey, java.util.ArrayList<java.lang.String> peptideQuantification, java.util.HashMap<java.lang.Integer,Ratio> proteinRatios)
proteinKey
- the identified protein match keyproteinRatios
- the estimated protein ratiospeptideQuantification
- the corresponding peptide quantificationMethod Detail |
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public java.util.ArrayList<java.lang.String> getPeptideQuantification()
public void addPeptideQuantification(java.lang.String newPeptideQuantification)
newPeptideQuantification
- the new peptide quantificationpublic java.lang.String getKey()
QuantificationMatch
getKey
in class QuantificationMatch
public QuantificationMatch.MatchType getType()
QuantificationMatch
getType
in class QuantificationMatch
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