Package | Description |
---|---|
com.compomics.util.experiment.identification.matches |
This package contains experiment classes releated to matches.
|
Modifier and Type | Method and Description |
---|---|
PeptideAssumption |
SpectrumMatch.getBestAssumption()
Getter for the best assumption.
|
PeptideAssumption |
SpectrumMatch.getFirstHit(int advocateId)
Returns the first hit obtained using the specified advocate.
|
Modifier and Type | Method and Description |
---|---|
ArrayList<PeptideAssumption> |
SpectrumMatch.getAllAssumptions()
Return all assumptions for all search engines as a list.
|
HashMap<Double,ArrayList<PeptideAssumption>> |
SpectrumMatch.getAllAssumptions(int advocateId)
Return all assumptions for the specified search engine indexed by their
e-value.
|
Modifier and Type | Method and Description |
---|---|
void |
SpectrumMatch.addHit(int otherAdvocateId,
PeptideAssumption otherAssumption)
Add a first hit.
|
void |
SpectrumMatch.removeAssumption(PeptideAssumption peptideAssumption)
Removes an assumption from the mapping
|
void |
SpectrumMatch.setBestAssumption(PeptideAssumption bestAssumption)
Setter for the best assumption.
|
void |
SpectrumMatch.setFirstHit(int advocateId,
PeptideAssumption peptideAssumption)
Sets the best peptideAssumption according to the search engine.
|
Constructor and Description |
---|
SpectrumMatch(String spectrumKey,
PeptideAssumption assumption)
Constructor for the spectrum match.
|
Copyright © 2013. All Rights Reserved.