Package | Description |
---|---|
com.compomics.util.experiment |
This package contains MSExperiment main class and all sub-classes useful for the modeling of an experiment.
|
com.compomics.util.experiment.biology |
This package contains experiement classes related to biological entities.
|
com.compomics.util.experiment.identification |
This package contains experiment classes related to identifications.
|
com.compomics.util.experiment.identification.advocates |
This package contains experiment classes related to modeling identifications.
|
com.compomics.util.experiment.identification.identifications |
This package contains experiment classes related to MS/MS identifications.
|
com.compomics.util.experiment.identification.matches |
This package contains experiment classes releated to matches.
|
com.compomics.util.experiment.identification.ptm | |
com.compomics.util.experiment.identification.scoring | |
com.compomics.util.experiment.io.identifications | |
com.compomics.util.experiment.quantification |
This package contains experiment classes related to quantification.
|
com.compomics.util.gui.spectrum |
This package contains GUI classes related to Spectrum and Chromatogram visualization.
|
com.compomics.util.preferences |
Class and Description |
---|
Identification
This class contains identification results.
|
Class and Description |
---|
SearchParameters
This class groups the parameters used for identification.
|
Class and Description |
---|
Advocate
The advocate of a hit can be a search engine, a rescoring algorithm, etc.
|
AdvocateFactory
This factory will provide adapted advocates when required.
|
IdentificationMatch
This is an abstract class for an identification match.
|
IdentificationMatch.MatchType
The type of match.
|
NeutralLossesMap
This class contains the informations relative to the accounting of neutral
losses
|
SearchParameters
This class groups the parameters used for identification.
|
SearchParameters.PrecursorAccuracyType
Possible mass accuracy types.
|
SequenceFactory
Factory retrieving the information of the loaded FASTA file.
|
Class and Description |
---|
Advocate
The advocate of a hit can be a search engine, a rescoring algorithm, etc.
|
Class and Description |
---|
Identification
This class contains identification results.
|
Class and Description |
---|
IdentificationMatch
This is an abstract class for an identification match.
|
IdentificationMatch.MatchType
The type of match.
|
PeptideAssumption
This object will models the assumption made by an advocate.
|
Class and Description |
---|
NeutralLossesMap
This class contains the informations relative to the accounting of neutral
losses
|
Class and Description |
---|
NeutralLossesMap
This class contains the informations relative to the accounting of neutral
losses
|
Class and Description |
---|
SearchParameters
This class groups the parameters used for identification.
|
Class and Description |
---|
Identification
This class contains identification results.
|
Class and Description |
---|
NeutralLossesMap
This class contains the informations relative to the accounting of neutral
losses
|
Class and Description |
---|
NeutralLossesMap
This class contains the informations relative to the accounting of neutral
losses
|
SearchParameters
This class groups the parameters used for identification.
|
Copyright © 2013. All Rights Reserved.