public class PeptideQuantification extends QuantificationMatch
QuantificationMatch.MatchType
ratios
Constructor and Description |
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PeptideQuantification(java.lang.String peptideKey)
Constructor for the peptide quantification
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PeptideQuantification(java.lang.String peptideKey,
java.util.ArrayList<java.lang.String> psmQuantification)
Constructor for the peptide quantification
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PeptideQuantification(java.lang.String peptideKey,
java.util.ArrayList<java.lang.String> psmQuantification,
java.util.HashMap<java.lang.Integer,Ratio> ratios)
Constructor for the peptide quantification
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Modifier and Type | Method and Description |
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void |
addPsmQuantification(java.lang.String newPsmQuantification)
Adds a new psm quantification in the psm quantification map
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java.lang.String |
getKey()
Returns the key of a match.
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java.util.ArrayList<java.lang.String> |
getPsmQuantification()
Getter for the corresponding spectrum quantification
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QuantificationMatch.MatchType |
getType()
Returns the type of a match
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addRatio, getRatios, setRatios
addUrParam, getParameterKey, getUrParam
public PeptideQuantification(java.lang.String peptideKey)
peptideKey
- the key of the identification peptide matchpublic PeptideQuantification(java.lang.String peptideKey, java.util.ArrayList<java.lang.String> psmQuantification)
peptideKey
- the key of the identification peptide matchpsmQuantification
- the corresponding spectrum quantificationpublic PeptideQuantification(java.lang.String peptideKey, java.util.ArrayList<java.lang.String> psmQuantification, java.util.HashMap<java.lang.Integer,Ratio> ratios)
peptideKey
- the identification peptide matchpsmQuantification
- the corresponding spectrum quantificationratios
- the estimated ratiospublic java.util.ArrayList<java.lang.String> getPsmQuantification()
public void addPsmQuantification(java.lang.String newPsmQuantification)
newPsmQuantification
- the new psm quantificationpublic java.lang.String getKey()
QuantificationMatch
getKey
in class QuantificationMatch
public QuantificationMatch.MatchType getType()
QuantificationMatch
getType
in class QuantificationMatch
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