public class ProteinQuantification extends QuantificationMatch
QuantificationMatch.MatchType
ratios
Constructor and Description |
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ProteinQuantification(java.lang.String proteinKey)
Constructor for the protein quantification
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ProteinQuantification(java.lang.String proteinKey,
java.util.ArrayList<java.lang.String> peptideQuantification)
Constructor for the protein quantification
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ProteinQuantification(java.lang.String proteinKey,
java.util.ArrayList<java.lang.String> peptideQuantification,
java.util.HashMap<java.lang.Integer,Ratio> proteinRatios)
Constructor for the protein quantification
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Modifier and Type | Method and Description |
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void |
addPeptideQuantification(java.lang.String newPeptideQuantification)
Adds a new peptide quantification in the protein quantification
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java.lang.String |
getKey()
Returns the key of a match.
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java.util.ArrayList<java.lang.String> |
getPeptideQuantification()
Getter for the corresponding peptide quantification
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QuantificationMatch.MatchType |
getType()
Returns the type of a match
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addRatio, getRatios, setRatios
addUrParam, getParameterKey, getUrParam
public ProteinQuantification(java.lang.String proteinKey)
proteinKey
- the identified protein match keypublic ProteinQuantification(java.lang.String proteinKey, java.util.ArrayList<java.lang.String> peptideQuantification)
proteinKey
- the identified protein match keypeptideQuantification
- the corresponding peptide quantificationpublic ProteinQuantification(java.lang.String proteinKey, java.util.ArrayList<java.lang.String> peptideQuantification, java.util.HashMap<java.lang.Integer,Ratio> proteinRatios)
proteinKey
- the identified protein match keyproteinRatios
- the estimated protein ratiospeptideQuantification
- the corresponding peptide quantificationpublic java.util.ArrayList<java.lang.String> getPeptideQuantification()
public void addPeptideQuantification(java.lang.String newPeptideQuantification)
newPeptideQuantification
- the new peptide quantificationpublic java.lang.String getKey()
QuantificationMatch
getKey
in class QuantificationMatch
public QuantificationMatch.MatchType getType()
QuantificationMatch
getType
in class QuantificationMatch
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