Package | Description |
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com.compomics.util.experiment.identification |
This package contains experiment classes related to identifications.
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com.compomics.util.experiment.io.identifications | |
com.compomics.util.experiment.io.identifications.idfilereaders |
This package contains experiment classes related to reading search engine files.
|
Modifier and Type | Method and Description |
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SpectrumMatch |
IdentificationDB.getSpectrumMatch(java.lang.String key)
Returns the desired spectrum match.
|
SpectrumMatch |
Identification.getSpectrumMatch(java.lang.String spectrumKey)
Returns a spectrum match.
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Modifier and Type | Method and Description |
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void |
IdentificationDB.addSpectrumMatch(SpectrumMatch spectrumMatch)
Adds a spectrum match to the database.
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void |
Identification.addSpectrumMatch(SpectrumMatch newMatch)
Adds a spectrum match to the identification.
|
void |
IdentificationDB.updateSpectrumMatch(SpectrumMatch spectrumMatch)
Updates a spectrum match.
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void |
Identification.updateSpectrumMatch(SpectrumMatch spectrumMatch)
Updates a spectrum match in the database.
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Modifier and Type | Method and Description |
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void |
Identification.addSpectrumMatch(java.util.Set<SpectrumMatch> spectrumMatches)
Add a set of spectrumMatches to the model.
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Modifier and Type | Method and Description |
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java.util.HashSet<SpectrumMatch> |
IdfileReader.getAllSpectrumMatches(WaitingHandler waitingHandler)
This methods retrieves all the identifications from an identification
file as a list of spectrum matches It is very important to close the file
reader after creation.
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Modifier and Type | Method and Description |
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java.util.HashSet<SpectrumMatch> |
AndromedaIdfileReader.getAllSpectrumMatches(WaitingHandler waitingHandler) |
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