Package com.compomics.util.protein

The classes in this package concern useful Objects and their operations for modelling and handling proteins.

See:
          Description

Class Summary
AASequenceImpl This class represents a sequence for a protein or peptide.
DualEnzyme This class implements an enzyme with a dual specificity; the N-terminus of a resultant peptide will have certain residue, the C-terminus will have another, eg.
Enzyme This class implements the functionality for an Enzyme.
Header This class represents the header for a Protein instance.
ModificationFactory This class can be used to generate a Modification instance from a code or title.
ModificationImplementation This class implements a specific Modification.
ModificationTemplate This class holds a template for a Modification, meaning that it contains all shared characteristics of a Modification, but not the instance-specific one.
MolecularFormula This class represents the molecular formula.
Protein This class implements the behaviour for a Protein instance.
RegExEnzyme This class implements the functionality of an Enzyme by simulating digestion based on a regular expression.
 

Enum Summary
Header.DatabaseType A list of the database types.
 

Package com.compomics.util.protein Description

The classes in this package concern useful Objects and their operations for modelling and handling proteins.



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