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Packages that use ModificationProfile | |
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com.compomics.util.experiment.biology | This package contains experiement classes related to biological entities. |
com.compomics.util.experiment.identification | This package contains experiment classes related to identifications. |
Uses of ModificationProfile in com.compomics.util.experiment.biology |
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Methods in com.compomics.util.experiment.biology with parameters of type ModificationProfile | |
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ArrayList<String> |
PTMFactory.getExpectedPTMs(ModificationProfile modificationProfile,
Peptide peptide,
double modificationMass,
double massTolerance)
Returns the expected modifications based on the modification profile, the peptide found and the modification details |
ArrayList<String> |
PTMFactory.getExpectedPTMs(ModificationProfile modificationProfile,
Peptide peptide,
String searchedPTMName)
Returns the names of the possibly expected variable modification based on the name of the searched variable modification |
Uses of ModificationProfile in com.compomics.util.experiment.identification |
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Methods in com.compomics.util.experiment.identification that return ModificationProfile | |
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ModificationProfile |
SearchParameters.getModificationProfile()
Returns the modification profile of the project. |
Methods in com.compomics.util.experiment.identification with parameters of type ModificationProfile | |
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void |
SearchParameters.setModificationProfile(ModificationProfile modificationProfile)
Sets the modification profile of the project. |
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