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Packages that use AminoAcidPattern | |
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com.compomics.util.experiment.biology | This package contains experiement classes related to biological entities. |
com.compomics.util.gui | This package contains basic GUI classes. |
Uses of AminoAcidPattern in com.compomics.util.experiment.biology |
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Methods in com.compomics.util.experiment.biology that return AminoAcidPattern | |
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AminoAcidPattern |
PTM.getPattern()
Returns the amino acid pattern targeted by this modification. |
AminoAcidPattern |
AminoAcidPattern.getStandardSearchPattern()
Computes a pattern which can be searched by standard search engines, i.e., a pattern targeting a single amino-acid and not a complex pattern. |
static AminoAcidPattern |
AminoAcidPattern.getTrypsinExample()
Returns the trypsin example as amino acid pattern. |
static AminoAcidPattern |
AminoAcidPattern.merge(AminoAcidPattern pattern1,
AminoAcidPattern pattern2)
Convenience method merging two different patterns (see public void merge(AminoAcidPattern otherPattern) for detailed information of the merging procedure). |
Methods in com.compomics.util.experiment.biology with parameters of type AminoAcidPattern | |
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boolean |
AminoAcidPattern.isSameAs(AminoAcidPattern anotherPattern)
Indicates whether another AminoAcidPattern targets the same pattern. |
void |
AminoAcidPattern.merge(AminoAcidPattern otherPattern)
Simple merger for two patterns. |
static AminoAcidPattern |
AminoAcidPattern.merge(AminoAcidPattern pattern1,
AminoAcidPattern pattern2)
Convenience method merging two different patterns (see public void merge(AminoAcidPattern otherPattern) for detailed information of the merging procedure). |
void |
PTM.setPattern(AminoAcidPattern pattern)
Sets the amino acid pattern targeted by this modification. |
Constructors in com.compomics.util.experiment.biology with parameters of type AminoAcidPattern | |
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AminoAcidPattern(AminoAcidPattern aminoAcidPattern)
Creates a pattern from another pattern. |
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PTM(int type,
String name,
double mass,
AminoAcidPattern aminoAcidPattern)
Constructor for a reference modification. |
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PTM(int type,
String name,
String shortName,
double mass,
AminoAcidPattern aminoAcidPattern)
Constructor for a reference modification. |
Uses of AminoAcidPattern in com.compomics.util.gui |
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Methods in com.compomics.util.gui that return AminoAcidPattern | |
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AminoAcidPattern |
AminoAcidPatternDialog.getPattern()
Returns the pattern as edited by the user. |
Constructors in com.compomics.util.gui with parameters of type AminoAcidPattern | |
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AminoAcidPatternDialog(Frame parent,
AminoAcidPattern pattern,
boolean editable)
Creates a new AminoAcidPatternDialog. |
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