Uses of Class
com.compomics.util.preferences.ModificationProfile

Packages that use ModificationProfile
com.compomics.util.experiment.biology This package contains experiement classes related to biological entities. 
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
 

Uses of ModificationProfile in com.compomics.util.experiment.biology
 

Methods in com.compomics.util.experiment.biology with parameters of type ModificationProfile
 ArrayList<String> PTMFactory.getExpectedPTMs(ModificationProfile modificationProfile, Peptide peptide, double modificationMass, double massTolerance)
          Returns the expected modifications based on the modification profile, the peptide found and the modification details
 ArrayList<String> PTMFactory.getExpectedPTMs(ModificationProfile modificationProfile, Peptide peptide, String searchedPTMName)
          Returns the names of the possibly expected variable modification based on the name of the searched variable modification
 

Uses of ModificationProfile in com.compomics.util.experiment.identification
 

Methods in com.compomics.util.experiment.identification that return ModificationProfile
 ModificationProfile SearchParameters.getModificationProfile()
          Returns the modification profile of the project.
 

Methods in com.compomics.util.experiment.identification with parameters of type ModificationProfile
 void SearchParameters.setModificationProfile(ModificationProfile modificationProfile)
          Sets the modification profile of the project.
 



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