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Packages that use Charge | |
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com.compomics.util.experiment.identification | This package contains experiment classes related to identifications. |
com.compomics.util.experiment.identification.matches | This package contains experiment classes releated to matches. |
com.compomics.util.experiment.massspectrometry | This package contains experiment classes related to spectra. |
Uses of Charge in com.compomics.util.experiment.identification |
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Methods in com.compomics.util.experiment.identification that return Charge | |
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Charge |
PeptideAssumption.getIdentificationCharge()
Returns the charge used for identification. |
Charge |
SearchParameters.getMaxChargeSearched()
Returns the maximal charge searched. |
Charge |
SearchParameters.getMinChargeSearched()
Returns the minimal charge searched. |
Charge |
SearchParameters.getMinimalChargeForMultipleChargedFragments()
Returns the minimal precursor charge to account for multiply charged fragments in OMSSA. |
Methods in com.compomics.util.experiment.identification with parameters of type Charge | |
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void |
SearchParameters.setMaxChargeSearched(Charge maxChargeSearched)
Sets the maximal charge searched. |
void |
SearchParameters.setMinChargeSearched(Charge minChargeSearched)
Sets the minimal charge searched. |
void |
SearchParameters.setMinimalChargeForMultipleChargedFragments(Charge minimalChargeForMultipleChargedFragments)
Sets the minimal precursor charge to account for multiply charged fragments in OMSSA. |
Constructors in com.compomics.util.experiment.identification with parameters of type Charge | |
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PeptideAssumption(Peptide aPeptide,
int rank,
int advocate,
Charge identificationCharge,
double eValue,
String identificationFile)
Constructor for a peptide assumption. |
Uses of Charge in com.compomics.util.experiment.identification.matches |
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Fields in com.compomics.util.experiment.identification.matches declared as Charge | |
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Charge |
IonMatch.charge
The supposed charge of the ion. |
Methods in com.compomics.util.experiment.identification.matches with parameters of type Charge | |
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static String |
IonMatch.getPeakAnnotation(boolean html,
Ion ion,
Charge charge)
Returns the annotation to use for a given ion and charge as a String. |
static String |
IonMatch.getPeakAnnotation(Ion ion,
Charge charge)
Returns the annotation to use for a given ion and charge as a String. |
Constructors in com.compomics.util.experiment.identification.matches with parameters of type Charge | |
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IonMatch(Peak aPeak,
Ion anIon,
Charge aCharge)
Constructor for an ion peak. |
Uses of Charge in com.compomics.util.experiment.massspectrometry |
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Methods in com.compomics.util.experiment.massspectrometry that return types with arguments of type Charge | |
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ArrayList<Charge> |
Precursor.getPossibleCharges()
Getter for the possible charges. |
Constructor parameters in com.compomics.util.experiment.massspectrometry with type arguments of type Charge | |
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Precursor(double rt,
double mz,
ArrayList<Charge> possibleCharges)
Constructor for the precursor. |
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Precursor(double mz,
double intensity,
ArrayList<Charge> possibleCharges,
double rtMin,
double rtMax)
Cronstructor with rt window and no reference rt. |
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Precursor(double rt,
double mz,
double intensity,
ArrayList<Charge> possibleCharges)
Constructor for the precursor. |
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Precursor(double rt,
double mz,
double intensity,
ArrayList<Charge> possibleCharges,
double rtMin,
double rtMax)
Cronstructor with rt window. |
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