public class PsmQuantification extends QuantificationMatch
QuantificationMatch.MatchType
ratios
Constructor and Description |
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PsmQuantification(java.lang.String spectrumKey,
java.lang.String spectrumMatchKey)
Constructor for a spectrumQuantification
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Modifier and Type | Method and Description |
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void |
addIonMatch(int reporterIndex,
IonMatch match)
Method to add a match between a peak and a reporter ion
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java.util.HashMap<java.lang.Integer,java.lang.Double> |
getDeisotopedIntensities()
returns the deisotoped intensities
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java.lang.String |
getKey()
Returns the key of a match.
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double |
getReferenceIntensity()
Returns the reference intensity used to estimate the ratios
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java.util.HashMap<java.lang.Integer,IonMatch> |
getReporterMatches()
Getter for the reporter matches
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java.lang.String |
getSpectrumMatchKey()
Getter for the key of the spectrum match
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QuantificationMatch.MatchType |
getType()
Returns the type of a match
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void |
setDeisotopedIntensities(java.util.HashMap<java.lang.Integer,java.lang.Double> deisotopedIntensities)
Sets the deisotoped intensities
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void |
setReferenceIntensity(double referenceIntensity)
Sets the reference intensity used to estimate the ratios
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addRatio, getRatios, setRatios
addUrParam, getParameterKey, getUrParam
public PsmQuantification(java.lang.String spectrumKey, java.lang.String spectrumMatchKey)
spectrumKey
- the corresponding spectrum keyspectrumMatchKey
- the corresponding spectrum match keypublic void addIonMatch(int reporterIndex, IonMatch match)
reporterIndex
- static index of the reporter ionmatch
- The corresponding ion matchpublic java.lang.String getKey()
QuantificationMatch
getKey
in class QuantificationMatch
public java.lang.String getSpectrumMatchKey()
public java.util.HashMap<java.lang.Integer,IonMatch> getReporterMatches()
public java.util.HashMap<java.lang.Integer,java.lang.Double> getDeisotopedIntensities()
public void setDeisotopedIntensities(java.util.HashMap<java.lang.Integer,java.lang.Double> deisotopedIntensities)
deisotopedIntensities
- the deisotoped intensitiespublic double getReferenceIntensity()
public void setReferenceIntensity(double referenceIntensity)
referenceIntensity
- the reference intensity used to estimate the ratiospublic QuantificationMatch.MatchType getType()
QuantificationMatch
getType
in class QuantificationMatch
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