Package | Description |
---|---|
com.compomics.util.db |
This package contains database related classes.
|
com.compomics.util.experiment.identification |
This package contains experiment classes related to identifications.
|
com.compomics.util.experiment.quantification |
This package contains experiment classes related to quantification.
|
Modifier and Type | Method and Description |
---|---|
ObjectsCache |
ObjectsDB.getObjectsCache()
Returns the cache used by this database.
|
Modifier and Type | Method and Description |
---|---|
void |
ObjectsDB.establishConnection(java.lang.String aDbFolder,
boolean deleteOldDatabase,
ObjectsCache objectsCache)
Establishes connection to the database.
|
void |
ObjectsDB.setObjectCache(ObjectsCache objectCache)
Sets the object cache to be used by this database.
|
Constructor and Description |
---|
ObjectsDB(java.lang.String folder,
java.lang.String dbName,
boolean deleteOldDatabase,
ObjectsCache objectsCache)
Constructor.
|
Modifier and Type | Method and Description |
---|---|
void |
Identification.convert(WaitingHandler waitingHandler,
java.lang.String newDirectory,
java.lang.String newName,
ObjectsCache objectsCache,
java.io.File directory)
Converts a serialization based structure into a database based one.
|
void |
Identification.establishConnection(java.lang.String dbFolder,
boolean deleteOldDatabase,
ObjectsCache objectsCache)
Establishes a connection to the database.
|
Constructor and Description |
---|
IdentificationDB(java.lang.String folder,
java.lang.String name,
boolean deleteOldDatabase,
ObjectsCache objectCache)
Constructor creating the database and the protein and protein parameters
tables.
|
Modifier and Type | Method and Description |
---|---|
void |
QuantificationDB.establishConnection(java.lang.String dbFolder,
boolean deleteOldDatabase,
ObjectsCache objectsCache)
Establishes connection to the database.
|
void |
Quantification.establishConnection(java.lang.String dbFolder,
java.lang.String name,
boolean deleteOldDatabase,
ObjectsCache objectsCache)
Establishes connection to the database.
|
Constructor and Description |
---|
QuantificationDB(java.lang.String folder,
java.lang.String name,
boolean deleteOldDatabase,
ObjectsCache objectsCache)
Constructor creating the database and the protein and protein parameters
tables.
|
Copyright © 2013. All Rights Reserved.