Package | Description |
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com.compomics.util.experiment.biology |
This package contains experiement classes related to biological entities.
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com.compomics.util.experiment.biology.ions |
This package contains experiment classes related to ions.
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com.compomics.util.experiment.quantification.reporterion |
This package contains experiment classes related to reporter ions.
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Modifier and Type | Method and Description |
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java.util.ArrayList<ReporterIon> |
PTM.getReporterIons()
Returns the reporter ions possibly encountered with this modification.
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Modifier and Type | Method and Description |
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void |
PTM.addReporterIon(ReporterIon reporterIon)
Adds a reporter ion.
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Modifier and Type | Method and Description |
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void |
PTM.setReporterIons(java.util.ArrayList<ReporterIon> reporterIons)
Sets the reporter ions possibly encountered with this modification.
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Modifier and Type | Field and Description |
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static ReporterIon |
ReporterIon.iTRAQ113
Standard reporter ion iTRAQ 113.
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static ReporterIon |
ReporterIon.iTRAQ114
Standard reporter ion iTRAQ 114.
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static ReporterIon |
ReporterIon.iTRAQ115
Standard reporter ion iTRAQ 115.
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static ReporterIon |
ReporterIon.iTRAQ116
Standard reporter ion iTRAQ 116.
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static ReporterIon |
ReporterIon.iTRAQ117
Standard reporter ion iTRAQ 117.
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static ReporterIon |
ReporterIon.iTRAQ118
Standard reporter ion iTRAQ 118.
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static ReporterIon |
ReporterIon.iTRAQ119
Standard reporter ion iTRAQ 119.
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static ReporterIon |
ReporterIon.iTRAQ121
Standard reporter ion iTRAQ 121.
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static ReporterIon |
ReporterIon.TMT0
Standard reporter ion TMT0.
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static ReporterIon |
ReporterIon.TMT1
Standard reporter ion TMT1.
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static ReporterIon |
ReporterIon.TMT2
Standard reporter ion TMT2.
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static ReporterIon |
ReporterIon.TMT3
Standard reporter ion TMT3.
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static ReporterIon |
ReporterIon.TMT4
Standard reporter ion TMT4.
|
static ReporterIon |
ReporterIon.TMT5
Standard reporter ion TMT5.
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Modifier and Type | Method and Description |
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boolean |
ReporterIon.isSameAs(ReporterIon anotherReporterIon)
Compares the current reporter ion with another one based on their masses.
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Modifier and Type | Method and Description |
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java.util.ArrayList<ReporterIon> |
ReporterMethod.getReporterIons()
Returns the reporter ions used.
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Constructor and Description |
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ReporterMethod(java.lang.String name,
java.util.ArrayList<ReporterIon> reporterIons,
java.util.ArrayList<CorrectionFactor> correctionFactors)
Constructor for a reporter method.
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