public class PtmtableContent
extends java.lang.Object
Constructor and Description |
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PtmtableContent()
Constructor.
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Modifier and Type | Method and Description |
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void |
addAll(PtmtableContent anotherContent)
Add all.
|
void |
addIntensity(int nMod,
java.lang.Integer peptideFragmentIonType,
int aa,
double intensity)
Add intensity.
|
int[] |
getHistogram(int nMod,
java.lang.Integer peptideFragmentIonType,
int aa,
int bins)
Get histogram.
|
java.util.ArrayList<java.lang.Double> |
getIntensities(int nMod,
java.lang.Integer peptideFragmentIonType,
int aa)
Get intensity.
|
java.util.HashMap<java.lang.Integer,java.util.HashMap<java.lang.Integer,java.util.HashMap<java.lang.Integer,java.util.ArrayList<java.lang.Double>>>> |
getMap()
Get the map.
|
double |
getMaxIntensity()
Returns the max intensity.
|
java.lang.Double |
getQuantile(int nMod,
java.lang.Integer peptideFragmentIonType,
int aa,
double quantile)
Get the quantile.
|
void |
normalize()
Normalize intesities.
|
public void addIntensity(int nMod, java.lang.Integer peptideFragmentIonType, int aa, double intensity)
nMod
- peptideFragmentIonType
- aa
- intensity
- public java.util.ArrayList<java.lang.Double> getIntensities(int nMod, java.lang.Integer peptideFragmentIonType, int aa)
nMod
- peptideFragmentIonType
- aa
- public java.lang.Double getQuantile(int nMod, java.lang.Integer peptideFragmentIonType, int aa, double quantile)
nMod
- peptideFragmentIonType
- aa
- quantile
- public int[] getHistogram(int nMod, java.lang.Integer peptideFragmentIonType, int aa, int bins)
nMod
- peptideFragmentIonType
- aa
- bins
- public java.util.HashMap<java.lang.Integer,java.util.HashMap<java.lang.Integer,java.util.HashMap<java.lang.Integer,java.util.ArrayList<java.lang.Double>>>> getMap()
public void addAll(PtmtableContent anotherContent)
anotherContent
- public void normalize()
public double getMaxIntensity()
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