com.compomics.util.denovo
Class PeptideAssumptionDetails

java.lang.Object
  extended by com.compomics.util.denovo.PeptideAssumptionDetails
All Implemented Interfaces:
UrParameter, Serializable

public class PeptideAssumptionDetails
extends Object
implements UrParameter

This class contains the de novo specific details of a spectrum match

Author:
Marc Vaudel
See Also:
Serialized Form

Field Summary
 
Fields inherited from interface com.compomics.util.experiment.personalization.UrParameter
serialVersionUID
 
Constructor Summary
PeptideAssumptionDetails()
          Constructor.
 
Method Summary
 double getcTermGap()
          Returns the C-term Gap.
 String getFamilyName()
          This method returns the family name of the parameter.
 int getIndex()
          This method returns the index of the parameter.
 double getnTermGap()
          Returns the N-term Gap.
 double getPepNovoScore()
          Returns the pep novo score.
 void setcTermGap(double cTermGap)
          Sets the C-term Gap.
 void setnTermGap(double nTermGap)
          Sets the N-term Gap.
 void setPepNovoScore(double pepNovoScore)
          Sets the pep novo score.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

PeptideAssumptionDetails

public PeptideAssumptionDetails()
Constructor.

Method Detail

getnTermGap

public double getnTermGap()
Returns the N-term Gap.

Returns:
the N-term Gap

setnTermGap

public void setnTermGap(double nTermGap)
Sets the N-term Gap.

Parameters:
nTermGap - the N-term Gap

getcTermGap

public double getcTermGap()
Returns the C-term Gap.

Returns:
the C-term Gap

setcTermGap

public void setcTermGap(double cTermGap)
Sets the C-term Gap.

Parameters:
cTermGap - the C-term Gap

getPepNovoScore

public double getPepNovoScore()
Returns the pep novo score.

Returns:
the pep novo score

setPepNovoScore

public void setPepNovoScore(double pepNovoScore)
Sets the pep novo score.

Parameters:
pepNovoScore - the pep novo score

getFamilyName

public String getFamilyName()
Description copied from interface: UrParameter
This method returns the family name of the parameter. Shall not contain '|'.

Specified by:
getFamilyName in interface UrParameter
Returns:
family name

getIndex

public int getIndex()
Description copied from interface: UrParameter
This method returns the index of the parameter. Shall not contain '|'.

Specified by:
getIndex in interface UrParameter
Returns:
the index of the parameter


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