|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use Protein | |
---|---|
com.compomics.util.nucleotide | The classes in this package concern useful Objects and their operations for modelling and handling nucleotides. |
com.compomics.util.protein | The classes in this package concern useful Objects and their operations for modelling and handling proteins. |
Uses of Protein in com.compomics.util.nucleotide |
---|
Methods in com.compomics.util.nucleotide that return Protein | |
---|---|
Protein[] |
NucleotideSequence.translate()
This method translates the nucleotide sequence in six reading frames. |
Uses of Protein in com.compomics.util.protein |
---|
Methods in com.compomics.util.protein that return Protein | |
---|---|
Protein[] |
RegExEnzyme.cleave(Protein aProtein)
|
Protein[] |
Enzyme.cleave(Protein aProtein)
This method is the focus of the Enzyme instance. |
Protein[] |
DualEnzyme.cleave(Protein aProtein)
This method is the focus of the Enzyme instance. |
Protein[] |
Enzyme.cleave(Protein aProtein,
int minPeptideLength,
int maxPeptideLength)
This method is the focus of the Enzyme instance. |
Protein |
Protein.getCTermTruncatedProtein(int aSize)
This method truncates the sequence for this protein on the C-terminus to the requested size. |
Protein |
Protein.getNTermTruncatedProtein(int aSize)
This method truncates the sequence for this protein on the N-terminus to the requested size. |
Protein[] |
DualEnzyme.oldCleave(Protein aProtein)
This cleave method will process sequence XDYRZ solely into YR peptides. |
Methods in com.compomics.util.protein with parameters of type Protein | |
---|---|
Protein[] |
RegExEnzyme.cleave(Protein aProtein)
|
Protein[] |
Enzyme.cleave(Protein aProtein)
This method is the focus of the Enzyme instance. |
Protein[] |
DualEnzyme.cleave(Protein aProtein)
This method is the focus of the Enzyme instance. |
Protein[] |
Enzyme.cleave(Protein aProtein,
int minPeptideLength,
int maxPeptideLength)
This method is the focus of the Enzyme instance. |
Protein[] |
DualEnzyme.oldCleave(Protein aProtein)
This cleave method will process sequence XDYRZ solely into YR peptides. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |