com.compomics.util.experiment.identification
Interfaces 
Advocate
Classes 
AdvocateFactory
FastaIndex
Identification
IdentificationDB
IdentificationMatch
IdentificationMethod
NeutralLossesMap
PeptideAssumption
SearchParameters
SearchParametersInputBean
SequenceFactory
SpectrumAnnotator
TagFactory
Enums 
IdentificationMatch.MatchType
SearchParameters.PrecursorAccuracyType
SearchParametersCLIParams
SearchParametersInputBean.ToolType