public class PtmtableContent extends Object
Constructor and Description |
---|
PtmtableContent()
Constructor.
|
Modifier and Type | Method and Description |
---|---|
void |
addAll(PtmtableContent anotherContent)
Add all.
|
void |
addIntensity(int nMod,
Integer peptideFragmentIonType,
int aa,
double intensity)
Add intensity.
|
int[] |
getHistogram(int nMod,
Integer peptideFragmentIonType,
int aa,
int bins)
Get histogram.
|
ArrayList<Double> |
getIntensities(int nMod,
Integer peptideFragmentIonType,
int aa)
Get intensity.
|
HashMap<Integer,HashMap<Integer,HashMap<Integer,ArrayList<Double>>>> |
getMap()
Get the map.
|
double |
getMaxIntensity()
Returns the max intensity.
|
Double |
getQuantile(int nMod,
Integer peptideFragmentIonType,
int aa,
double quantile)
Get the quantile.
|
void |
normalize()
Normalize intesities.
|
public void addIntensity(int nMod, Integer peptideFragmentIonType, int aa, double intensity)
nMod
- peptideFragmentIonType
- aa
- intensity
- public ArrayList<Double> getIntensities(int nMod, Integer peptideFragmentIonType, int aa)
nMod
- peptideFragmentIonType
- aa
- public Double getQuantile(int nMod, Integer peptideFragmentIonType, int aa, double quantile)
nMod
- peptideFragmentIonType
- aa
- quantile
- public int[] getHistogram(int nMod, Integer peptideFragmentIonType, int aa, int bins)
nMod
- peptideFragmentIonType
- aa
- bins
- public HashMap<Integer,HashMap<Integer,HashMap<Integer,ArrayList<Double>>>> getMap()
public void addAll(PtmtableContent anotherContent)
anotherContent
- public void normalize()
public double getMaxIntensity()
Copyright © 2013. All Rights Reserved.