public class ProcessingPreferences
extends java.lang.Object
implements java.io.Serializable
Constructor and Description |
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ProcessingPreferences()
Constructor with default settings.
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Modifier and Type | Method and Description |
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void |
estimateAScore(boolean shouldEstimateAScore)
Deprecated.
use the PTM scoring preferences instead
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double |
getPeptideFDR()
Returns the initial peptide FDR.
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java.lang.Double |
getProteinConfidenceMwPlots()
Returns the minimum confidence required for a protein to be included in
the average molecular weight analysis in the Fractions tab.
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double |
getProteinFDR()
Returns the initial protein FDR.
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double |
getPsmFDR()
Returns the initial PSM FDR.
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boolean |
isAScoreCalculated()
Deprecated.
use the PTM scoring preferences instead
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void |
setPeptideFDR(double peptideFDR)
Sets the initial peptide FDR.
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void |
setProteinConfidenceMwPlots(java.lang.Double proteinConfidenceMwPlots)
Sets the minimum confidence required for a protein to be included in the
average molecular weight analysis in the Fractions tab.
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void |
setProteinFDR(double proteinFDR)
Sets the initial protein FDR.
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void |
setPsmFDR(double psmFDR)
Sets the initial PSM FDR.
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public ProcessingPreferences()
public boolean isAScoreCalculated()
public void estimateAScore(boolean shouldEstimateAScore)
shouldEstimateAScore
- whether the A-score should be calculatedpublic double getPeptideFDR()
public void setPeptideFDR(double peptideFDR)
peptideFDR
- the initial peptide FDRpublic double getProteinFDR()
public void setProteinFDR(double proteinFDR)
proteinFDR
- the initial protein FDRpublic double getPsmFDR()
public void setPsmFDR(double psmFDR)
psmFDR
- the initial PSM FDRpublic java.lang.Double getProteinConfidenceMwPlots()
public void setProteinConfidenceMwPlots(java.lang.Double proteinConfidenceMwPlots)
proteinConfidenceMwPlots
- minimum confidenceCopyright © 2013. All Rights Reserved.