Uses of Class
com.compomics.util.gui.spectrum.DefaultSpectrumAnnotation

Packages that use DefaultSpectrumAnnotation
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.gui.spectrum This package contains GUI classes related to Spectrum and Chromatogram visualization. 
 

Uses of DefaultSpectrumAnnotation in com.compomics.util.experiment.identification
 

Methods in com.compomics.util.experiment.identification that return types with arguments of type DefaultSpectrumAnnotation
static Vector<DefaultSpectrumAnnotation> SpectrumAnnotator.getSpectrumAnnotation(ArrayList<IonMatch> ionMatches)
          Translates the list of ion matches into a vector of annotations which can be read by the SpectrumPanel.
 

Uses of DefaultSpectrumAnnotation in com.compomics.util.gui.spectrum
 

Methods in com.compomics.util.gui.spectrum that return types with arguments of type DefaultSpectrumAnnotation
static Vector<DefaultSpectrumAnnotation> SpectrumPanel.filterAnnotations(Vector<DefaultSpectrumAnnotation> annotations, HashMap<Ion.IonType,ArrayList<Integer>> iontypes, ArrayList<NeutralLoss> neutralLosses, boolean singleChargeSelected, boolean doubleChargeSelected, boolean moreThanTwoChargesSelected)
          Deprecated. don't use method based on the peak labels but on the data type
 

Method parameters in com.compomics.util.gui.spectrum with type arguments of type DefaultSpectrumAnnotation
static Vector<DefaultSpectrumAnnotation> SpectrumPanel.filterAnnotations(Vector<DefaultSpectrumAnnotation> annotations, HashMap<Ion.IonType,ArrayList<Integer>> iontypes, ArrayList<NeutralLoss> neutralLosses, boolean singleChargeSelected, boolean doubleChargeSelected, boolean moreThanTwoChargesSelected)
          Deprecated. don't use method based on the peak labels but on the data type
 



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