Uses of Class
com.compomics.util.protein.Header.DatabaseType

Packages that use Header.DatabaseType
com.compomics.util.experiment.biology This package contains experiement classes related to biological entities. 
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.protein The classes in this package concern useful Objects and their operations for modelling and handling proteins. 
 

Uses of Header.DatabaseType in com.compomics.util.experiment.biology
 

Methods in com.compomics.util.experiment.biology that return Header.DatabaseType
 Header.DatabaseType Protein.getDatabaseType()
          Getter for the protein database type.
 

Constructors in com.compomics.util.experiment.biology with parameters of type Header.DatabaseType
Protein(String accession, Header.DatabaseType databaseType, String sequence, boolean isDecoy)
          Constructor for a protein.
 

Uses of Header.DatabaseType in com.compomics.util.experiment.identification
 

Methods in com.compomics.util.experiment.identification that return Header.DatabaseType
 Header.DatabaseType FastaIndex.getDatabaseType()
          Indicates the database type.
 

Methods in com.compomics.util.experiment.identification with parameters of type Header.DatabaseType
 void FastaIndex.setDatabaseType(Header.DatabaseType databaseType)
          Sets the database type.
 

Constructors in com.compomics.util.experiment.identification with parameters of type Header.DatabaseType
FastaIndex(HashMap<String,Long> indexes, String fileName, String name, boolean concatenatedTargetDecoy, boolean isDefaultReversed, int nTarget, long lastModified, Header.DatabaseType databaseType, String decoyTag, String version)
          Constructor.
 

Uses of Header.DatabaseType in com.compomics.util.protein
 

Methods in com.compomics.util.protein that return Header.DatabaseType
 Header.DatabaseType Header.getDatabaseType()
           
static Header.DatabaseType Header.DatabaseType.valueOf(String name)
          Returns the enum constant of this type with the specified name.
static Header.DatabaseType[] Header.DatabaseType.values()
          Returns an array containing the constants of this enum type, in the order they are declared.
 

Methods in com.compomics.util.protein with parameters of type Header.DatabaseType
static String Header.getDatabaseTypeAsString(Header.DatabaseType databaseType)
          Convenience method returning the database name as a String.
 void Header.setDatabaseType(Header.DatabaseType aDatabaseType)
           
 



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