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Packages that use com.compomics.util.preferences | |
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com.compomics.software.dialogs | |
com.compomics.util.experiment.biology | This package contains experiement classes related to biological entities. |
com.compomics.util.experiment.identification | This package contains experiment classes related to identifications. |
com.compomics.util.gui.gene_mapping | |
com.compomics.util.gui.spectrum | This package contains GUI classes related to Spectrum and Chromatogram visualization. |
com.compomics.util.preferences | |
com.compomics.util.preferences.gui |
Classes in com.compomics.util.preferences used by com.compomics.software.dialogs | |
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UtilitiesUserPreferences
Utilities user preferences will be serialized in the user folder and provide useful information to all compomics software, well as soon as they use it of course. |
Classes in com.compomics.util.preferences used by com.compomics.util.experiment.biology | |
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ModificationProfile
This class stores the information about the modification preferences (colors, names) used for the selected project. |
Classes in com.compomics.util.preferences used by com.compomics.util.experiment.identification | |
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ModificationProfile
This class stores the information about the modification preferences (colors, names) used for the selected project. |
Classes in com.compomics.util.preferences used by com.compomics.util.gui.gene_mapping | |
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GenePreferences
Contains methods for downloading gene and GO mappings. |
Classes in com.compomics.util.preferences used by com.compomics.util.gui.spectrum | |
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ModificationProfile
This class stores the information about the modification preferences (colors, names) used for the selected project. |
Classes in com.compomics.util.preferences used by com.compomics.util.preferences | |
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GenePreferences
Contains methods for downloading gene and GO mappings. |
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IdFilter
This class achieves a pre-filtering of the identifications for PeptideShaker. |
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ModificationProfile
This class stores the information about the modification preferences (colors, names) used for the selected project. |
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UtilitiesUserPreferences
Utilities user preferences will be serialized in the user folder and provide useful information to all compomics software, well as soon as they use it of course. |
Classes in com.compomics.util.preferences used by com.compomics.util.preferences.gui | |
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IdFilter
This class achieves a pre-filtering of the identifications for PeptideShaker. |
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ProcessingPreferences
This class groups the user preferences for the initial PeptideShaker processing. |
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PTMScoringPreferences
This class contains the PTM scoring preferences. |
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