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Description
Class Summary | |
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AminoAcid | Class representing amino acids. |
AminoAcidPattern | An amino acid pattern is a sequence of amino-acids. |
Atom | This interface contains information about atoms |
ElementaryElement | This class can be used to retrieve elementary elements like a proton. |
Enzyme | This class models an enzyme. |
EnzymeFactory | This factory will provide the implemented enzymes. |
GlyconFactory | This factory will provide theoretic glycons. |
Ion | This class models an ion. |
IonFactory | This factory generates the expected ions from a peptide. |
Mutation | This class represents a mutation of one amino acid to another from the 20-letter amino acid alphabet. |
MutationFactory | This class holds the all possible one-letter peptide sequence mutations. |
NeutralLoss | This class represents a neutral loss. |
Peptide | This class models a peptide. |
Protein | This class models a protein. |
PTM | This class models a post-translational modification. |
PTMFactory | This factory will load PTM from an XML file and provide them on demand as standard class. |
Sample | This class models a proteomic sample. |
Enum Summary | |
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Ion.IonType | An enumerator of the supported ion types. |
This package contains experiement classes related to biological entities.
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