Uses of Class
com.compomics.util.experiment.identification.matches.ProteinMatch

Packages that use ProteinMatch
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.experiment.identification.matches This package contains experiment classes releated to matches. 
 

Uses of ProteinMatch in com.compomics.util.experiment.identification
 

Methods in com.compomics.util.experiment.identification that return ProteinMatch
 ProteinMatch Identification.getProteinMatch(String proteinKey)
          Returns a protein match.
 ProteinMatch IdentificationDB.getProteinMatch(String key, boolean useDB)
          Returns the desired protein match.
 ProteinMatch Identification.getProteinMatch(String proteinKey, boolean useDB)
          Returns a protein match.
 

Methods in com.compomics.util.experiment.identification with parameters of type ProteinMatch
 void IdentificationDB.addProteinMatch(ProteinMatch proteinMatch)
          Adds a protein match to the database.
 void IdentificationDB.updateProteinMatch(ProteinMatch proteinMatch)
          Updates a protein match.
 void Identification.updateProteinMatch(ProteinMatch proteinMatch)
          Updates a protein match in the database.
 

Uses of ProteinMatch in com.compomics.util.experiment.identification.matches
 

Methods in com.compomics.util.experiment.identification.matches with parameters of type ProteinMatch
 boolean ProteinMatch.contains(ProteinMatch proteinMatch)
          Returns a boolean indicating whether the protein match contains another set of theoretic proteins.
 



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