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java.lang.Objectcom.compomics.util.preferences.PTMScoringPreferences
public class PTMScoringPreferences
This class contains the PTM scoring preferences.
Constructor Summary | |
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PTMScoringPreferences()
Constructor. |
Method Summary | |
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boolean |
aScoreCalculation()
Returns a boolean indicating whether the A-score should be calculated. |
double |
getFlrThreshold()
Returns the FLR threshold. |
boolean |
isaScoreNeutralLosses()
Indicates whether the A-score calculation should take neutral losses into account. |
void |
setaScoreCalculation(boolean aScoreCalculation)
Sets whether the A-score should be calculated. |
void |
setaScoreNeutralLosses(boolean aScoreNeutralLosses)
Sets whether the A-score calculation should take neutral losses into account. |
void |
setFlrThreshold(double flr)
Sets the FLR threshold. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public PTMScoringPreferences()
Method Detail |
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public boolean aScoreCalculation()
public void setaScoreCalculation(boolean aScoreCalculation)
aScoreCalculation
- a boolean indicating whether the A-score should
be calculatedpublic boolean isaScoreNeutralLosses()
public void setaScoreNeutralLosses(boolean aScoreNeutralLosses)
aScoreNeutralLosses
- a boolean indicating whether the A-score
calculation should take neutral losses into accountpublic double getFlrThreshold()
public void setFlrThreshold(double flr)
flr
- the FLR threshold
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