Class Summary |
AnnotationPreferences |
This class contains the spectrum annotation preferences. |
GenePreferences |
Contains methods for downloading gene and GO mappings. |
IdFilter |
This class achieves a pre-filtering of the identifications for PeptideShaker. |
ModificationProfile |
This class stores the information about the modification preferences (colors,
names) used for the selected project. |
ProcessingPreferences |
This class groups the user preferences for the initial PeptideShaker
processing. |
PTMScoringPreferences |
This class contains the PTM scoring preferences. |
UtilitiesUserPreferences |
Utilities user preferences will be serialized in the user folder and provide
useful information to all compomics software, well as soon as they use it of
course. |