|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use SearchParameters | |
---|---|
com.compomics.util.experiment.biology | This package contains experiement classes related to biological entities. |
com.compomics.util.experiment.identification | This package contains experiment classes related to identifications. |
com.compomics.util.experiment.io.identifications | |
com.compomics.util.preferences | |
com.compomics.util.pride |
Uses of SearchParameters in com.compomics.util.experiment.biology |
---|
Methods in com.compomics.util.experiment.biology with parameters of type SearchParameters | |
---|---|
ArrayList<String> |
PTMFactory.loadBackedUpModifications(SearchParameters searchParameters,
boolean overwrite)
Verifies that the modifications backed-up in the search parameters are loaded and alerts the user in case conflicts are found. |
Uses of SearchParameters in com.compomics.util.experiment.identification |
---|
Methods in com.compomics.util.experiment.identification that return SearchParameters | |
---|---|
static SearchParameters |
SearchParameters.getIdentificationParameters(File file)
Loads the identification parameters from a serialized file. |
SearchParameters |
SearchParametersInputBean.getSearchParameters()
Returns the search parameters. |
Methods in com.compomics.util.experiment.identification with parameters of type SearchParameters | |
---|---|
boolean |
SearchParameters.equals(SearchParameters otherSearchParameters)
Returns true of the search parameter objects have identical settings. |
static void |
SearchParameters.saveIdentificationParameters(SearchParameters identificationParameters,
File file)
Saves the identification parameters to a serialized file. |
Uses of SearchParameters in com.compomics.util.experiment.io.identifications |
---|
Methods in com.compomics.util.experiment.io.identifications that return SearchParameters | |
---|---|
static SearchParameters |
IdentificationParametersReader.getSearchParameters(Properties aProps,
File userModsFile)
Deprecated. Conversion methods which converts an old school set of identification properties into a SearchParameters instance. |
Uses of SearchParameters in com.compomics.util.preferences |
---|
Methods in com.compomics.util.preferences with parameters of type SearchParameters | |
---|---|
void |
AnnotationPreferences.setPreferencesFromSearchParamaers(SearchParameters searchParameters)
Updates the annotation parameters based on the search parameters |
Uses of SearchParameters in com.compomics.util.pride |
---|
Methods in com.compomics.util.pride with parameters of type SearchParameters | |
---|---|
static PtmToPrideMap |
PtmToPrideMap.loadPtmToPrideMap(SearchParameters searchParameters)
Loads the PRIDE to PTM map from the user folder or creates a new one if the file is not present. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |