|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.quantification.QuantificationMatch
com.compomics.util.experiment.quantification.matches.ProteinQuantification
public class ProteinQuantification
This class models the quantification of a protein.
Nested Class Summary |
---|
Nested classes/interfaces inherited from class com.compomics.util.experiment.quantification.QuantificationMatch |
---|
QuantificationMatch.MatchType |
Field Summary |
---|
Fields inherited from class com.compomics.util.experiment.quantification.QuantificationMatch |
---|
ratios |
Constructor Summary | |
---|---|
ProteinQuantification(String proteinKey)
Constructor for the protein quantification. |
|
ProteinQuantification(String proteinKey,
ArrayList<String> peptideQuantification)
Constructor for the protein quantification. |
|
ProteinQuantification(String proteinKey,
ArrayList<String> peptideQuantification,
HashMap<Integer,Ratio> proteinRatios)
Constructor for the protein quantification. |
Method Summary | |
---|---|
void |
addPeptideQuantification(String newPeptideQuantification)
Adds a new peptide quantification in the protein quantification. |
String |
getKey()
Returns the key of a match. |
ArrayList<String> |
getPeptideQuantification()
Getter for the corresponding peptide quantification. |
QuantificationMatch.MatchType |
getType()
Returns the type of a match. |
Methods inherited from class com.compomics.util.experiment.quantification.QuantificationMatch |
---|
addRatio, getRatios, setRatios |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
---|
addUrParam, getParameterKey, getUrParam |
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
---|
public ProteinQuantification(String proteinKey)
proteinKey
- the identified protein match keypublic ProteinQuantification(String proteinKey, ArrayList<String> peptideQuantification)
proteinKey
- the identified protein match keypeptideQuantification
- the corresponding peptide quantificationpublic ProteinQuantification(String proteinKey, ArrayList<String> peptideQuantification, HashMap<Integer,Ratio> proteinRatios)
proteinKey
- the identified protein match keyproteinRatios
- the estimated protein ratiospeptideQuantification
- the corresponding peptide quantificationMethod Detail |
---|
public ArrayList<String> getPeptideQuantification()
public void addPeptideQuantification(String newPeptideQuantification)
newPeptideQuantification
- the new peptide quantificationpublic String getKey()
QuantificationMatch
getKey
in class QuantificationMatch
public QuantificationMatch.MatchType getType()
QuantificationMatch
getType
in class QuantificationMatch
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |