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Packages that use Header.DatabaseType | |
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com.compomics.util.experiment.biology | This package contains experiement classes related to biological entities. |
com.compomics.util.experiment.identification | This package contains experiment classes related to identifications. |
com.compomics.util.protein | The classes in this package concern useful Objects and their operations for modelling and handling proteins. |
Uses of Header.DatabaseType in com.compomics.util.experiment.biology |
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Methods in com.compomics.util.experiment.biology that return Header.DatabaseType | |
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Header.DatabaseType |
Protein.getDatabaseType()
Getter for the protein database type. |
Constructors in com.compomics.util.experiment.biology with parameters of type Header.DatabaseType | |
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Protein(String accession,
Header.DatabaseType databaseType,
String sequence,
boolean isDecoy)
Constructor for a protein. |
Uses of Header.DatabaseType in com.compomics.util.experiment.identification |
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Methods in com.compomics.util.experiment.identification that return Header.DatabaseType | |
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Header.DatabaseType |
FastaIndex.getDatabaseType()
Indicates the database type. |
Methods in com.compomics.util.experiment.identification with parameters of type Header.DatabaseType | |
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void |
FastaIndex.setDatabaseType(Header.DatabaseType databaseType)
Sets the database type. |
Constructors in com.compomics.util.experiment.identification with parameters of type Header.DatabaseType | |
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FastaIndex(HashMap<String,Long> indexes,
String fileName,
String name,
boolean concatenatedTargetDecoy,
boolean isDefaultReversed,
int nTarget,
long lastModified,
Header.DatabaseType databaseType,
String decoyTag,
String version)
Constructor. |
Uses of Header.DatabaseType in com.compomics.util.protein |
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Methods in com.compomics.util.protein that return Header.DatabaseType | |
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Header.DatabaseType |
Header.getDatabaseType()
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static Header.DatabaseType |
Header.DatabaseType.valueOf(String name)
Returns the enum constant of this type with the specified name. |
static Header.DatabaseType[] |
Header.DatabaseType.values()
Returns an array containing the constants of this enum type, in the order they are declared. |
Methods in com.compomics.util.protein with parameters of type Header.DatabaseType | |
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static String |
Header.getDatabaseTypeAsString(Header.DatabaseType databaseType)
Convenience method returning the database name as a String. |
void |
Header.setDatabaseType(Header.DatabaseType aDatabaseType)
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