public class ProteinQuantification extends QuantificationMatch
QuantificationMatch.MatchType
ratios
Constructor and Description |
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ProteinQuantification(String proteinKey)
Constructor for the protein quantification.
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ProteinQuantification(String proteinKey,
ArrayList<String> peptideQuantification)
Constructor for the protein quantification.
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ProteinQuantification(String proteinKey,
ArrayList<String> peptideQuantification,
HashMap<Integer,Ratio> proteinRatios)
Constructor for the protein quantification.
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Modifier and Type | Method and Description |
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void |
addPeptideQuantification(String newPeptideQuantification)
Adds a new peptide quantification in the protein quantification.
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String |
getKey()
Returns the key of a match.
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ArrayList<String> |
getPeptideQuantification()
Getter for the corresponding peptide quantification.
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QuantificationMatch.MatchType |
getType()
Returns the type of a match.
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addRatio, getRatios, setRatios
addUrParam, getParameterKey, getUrParam
public ProteinQuantification(String proteinKey)
proteinKey
- the identified protein match keypublic ProteinQuantification(String proteinKey, ArrayList<String> peptideQuantification)
proteinKey
- the identified protein match keypeptideQuantification
- the corresponding peptide quantificationpublic ProteinQuantification(String proteinKey, ArrayList<String> peptideQuantification, HashMap<Integer,Ratio> proteinRatios)
proteinKey
- the identified protein match keyproteinRatios
- the estimated protein ratiospeptideQuantification
- the corresponding peptide quantificationpublic ArrayList<String> getPeptideQuantification()
public void addPeptideQuantification(String newPeptideQuantification)
newPeptideQuantification
- the new peptide quantificationpublic String getKey()
QuantificationMatch
getKey
in class QuantificationMatch
public QuantificationMatch.MatchType getType()
QuantificationMatch
getType
in class QuantificationMatch
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