Package com.compomics.util.preferences

Class Summary
AnnotationPreferences This class contains the spectrum annotation preferences.
GenePreferences Contains methods for downloading gene and GO mappings.
IdFilter This class achieves a pre-filtering of the identifications for PeptideShaker.
ModificationProfile This class stores the information about the modification preferences (colors, names) used for the selected project.
ProcessingPreferences This class groups the user preferences for the initial PeptideShaker processing.
PTMScoringPreferences This class contains the PTM scoring preferences.
UtilitiesUserPreferences Utilities user preferences will be serialized in the user folder and provide useful information to all compomics software, well as soon as they use it of course.
 



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