Package com.compomics.util.experiment.biology

This package contains experiement classes related to biological entities.

See:
          Description

Class Summary
AminoAcid Class representing amino acids.
AminoAcidPattern An amino acid pattern is a sequence of amino-acids.
Atom This interface contains information about atoms
ElementaryElement This class can be used to retrieve elementary elements like a neutron.
Enzyme This class models an enzyme.
EnzymeFactory This factory will provide the implemented enzymes.
GlyconFactory This factory will provide theoretic glycons.
Ion This class models an ion.
IonFactory This factory generates the expected ions from a peptide.
Mutation This class represents a mutation of one amino acid to another from the 20-letter amino acid alphabet.
MutationFactory This class holds the all possible one-letter peptide sequence mutations.
NeutralLoss This class represents a neutral loss.
Peptide This class models a peptide.
Protein This class models a protein.
PTM This class models a post-translational modification.
PTMFactory This factory will load PTM from an XML file and provide them on demand as standard class.
Sample This class models a proteomic sample.
 

Enum Summary
Ion.IonType An enumerator of the supported ion types.
 

Package com.compomics.util.experiment.biology Description

This package contains experiement classes related to biological entities.



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