Uses of Class
com.compomics.util.experiment.identification.SpectrumAnnotator

Packages that use SpectrumAnnotator
com.compomics.util.experiment.identification.ptm.ptmscores   
 

Uses of SpectrumAnnotator in com.compomics.util.experiment.identification.ptm.ptmscores
 

Methods in com.compomics.util.experiment.identification.ptm.ptmscores with parameters of type SpectrumAnnotator
static HashMap<Integer,HashMap<Integer,Double>> AScore.getPositionToScoreMap(Peptide peptide, Peptide noModPeptide, ArrayList<Integer> possibleSites, MSnSpectrum spectrum, HashMap<Integer,MSnSpectrum> spectrumMap, HashMap<Ion.IonType,ArrayList<Integer>> iontypes, NeutralLossesMap scoringLossesMap, ArrayList<Integer> charges, int precursorCharge, double mzTolerance, SpectrumAnnotator spectrumAnnotator, PTM refPTM)
          Returns a map PTM localization -> score.
 



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