com.compomics.util.pdbfinder.pdb
Class PdbBlock

java.lang.Object
  extended by com.compomics.util.pdbfinder.pdb.PdbBlock

public class PdbBlock
extends Object

Created by IntelliJ IDEA. User: Niklaas Colaert Date: 9-jul-2008 Time: 13:53:46


Constructor Summary
PdbBlock(String aBlock, int aStart_protein, int aEnd_protein, int aStart_block, int aEnd_block)
           
 
Method Summary
 String getBlock()
           
 String getBlockSequence(String aPdbAccession)
           
 int getDifference()
           
 int getEnd_block()
           
 int getEnd_protein()
           
 Integer[] getSelectedPositions()
           
 boolean getSelection()
           
 int getStart_block()
           
 int getStart_protein()
           
 String readFasta(String lFasta, String aPdbAccession)
           
 String readUrl(String aUrl, String aPdbAccession)
           
 void setBlock(String aBlock)
           
 void setEnd_block(int aEnd_block)
           
 void setEnd_protein(int aEnd_protein)
           
 void setSelectedPositions(Integer[] aSelectedPositions)
           
 void setStart_block(int aStart_block)
           
 void setStart_protein(int aStart_protein)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

PdbBlock

public PdbBlock(String aBlock,
                int aStart_protein,
                int aEnd_protein,
                int aStart_block,
                int aEnd_block)
Method Detail

getBlock

public String getBlock()

setBlock

public void setBlock(String aBlock)

getStart_protein

public int getStart_protein()

setStart_protein

public void setStart_protein(int aStart_protein)

getEnd_protein

public int getEnd_protein()

setEnd_protein

public void setEnd_protein(int aEnd_protein)

getStart_block

public int getStart_block()

setStart_block

public void setStart_block(int aStart_block)

getEnd_block

public int getEnd_block()

setEnd_block

public void setEnd_block(int aEnd_block)

getDifference

public int getDifference()

getSelection

public boolean getSelection()

getSelectedPositions

public Integer[] getSelectedPositions()

setSelectedPositions

public void setSelectedPositions(Integer[] aSelectedPositions)

getBlockSequence

public String getBlockSequence(String aPdbAccession)

readUrl

public String readUrl(String aUrl,
                      String aPdbAccession)

readFasta

public String readFasta(String lFasta,
                        String aPdbAccession)


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