Package | Description |
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com.compomics.util.experiment.identification.ptm.ptmscores |
Modifier and Type | Method and Description |
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static java.util.HashMap<java.lang.Integer,java.util.HashMap<java.lang.Integer,java.lang.Double>> |
AScore.getPositionToScoreMap(Peptide peptide,
Peptide noModPeptide,
java.util.ArrayList<java.lang.Integer> possibleSites,
MSnSpectrum spectrum,
java.util.HashMap<java.lang.Integer,MSnSpectrum> spectrumMap,
java.util.HashMap<Ion.IonType,java.util.ArrayList<java.lang.Integer>> iontypes,
NeutralLossesMap scoringLossesMap,
java.util.ArrayList<java.lang.Integer> charges,
int precursorCharge,
double mzTolerance,
SpectrumAnnotator spectrumAnnotator,
PTM refPTM)
Returns a map PTM localization -> score.
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