Package | Description |
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com.compomics.util.experiment.biology |
This package contains experiement classes related to biological entities.
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Modifier and Type | Method and Description |
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java.util.ArrayList<ModificationMatch> |
Peptide.getModificationMatches()
Getter for the modifications carried by this peptide.
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Modifier and Type | Method and Description |
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void |
Peptide.addModificationMatch(ModificationMatch modificationMatch)
Adds a modification match.
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Constructor and Description |
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Peptide(java.lang.String aSequence,
java.util.ArrayList<ModificationMatch> modifications)
Constructor for the peptide.
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Peptide(java.lang.String aSequence,
java.util.ArrayList<java.lang.String> parentProteins,
java.util.ArrayList<ModificationMatch> modifications)
Deprecated.
use peptide without proteins and remap the peptide to the
proteins a posteriori instead
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Peptide(java.lang.String aSequence,
java.lang.Double mass,
java.util.ArrayList<java.lang.String> parentProteins,
java.util.ArrayList<ModificationMatch> modifications)
Deprecated.
use the constructor without mass. The mass will be
recalculated.
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