Package | Description |
---|---|
com.compomics.util.experiment.identification |
This package contains experiment classes related to identifications.
|
com.compomics.util.gui.spectrum |
This package contains GUI classes related to Spectrum and Chromatogram visualization.
|
Modifier and Type | Method and Description |
---|---|
static java.util.Vector<DefaultSpectrumAnnotation> |
SpectrumAnnotator.getSpectrumAnnotation(java.util.ArrayList<IonMatch> ionMatches)
Translates the list of ion matches into a vector of annotations which can
be read by the SpectrumPanel.
|
Modifier and Type | Method and Description |
---|---|
static java.util.Vector<DefaultSpectrumAnnotation> |
SpectrumPanel.filterAnnotations(java.util.Vector<DefaultSpectrumAnnotation> annotations,
java.util.HashMap<Ion.IonType,java.util.ArrayList<java.lang.Integer>> iontypes,
java.util.ArrayList<NeutralLoss> neutralLosses,
boolean singleChargeSelected,
boolean doubleChargeSelected,
boolean moreThanTwoChargesSelected)
Deprecated.
don't use method based on the peak labels but on the data
type
|
Modifier and Type | Method and Description |
---|---|
static java.util.Vector<DefaultSpectrumAnnotation> |
SpectrumPanel.filterAnnotations(java.util.Vector<DefaultSpectrumAnnotation> annotations,
java.util.HashMap<Ion.IonType,java.util.ArrayList<java.lang.Integer>> iontypes,
java.util.ArrayList<NeutralLoss> neutralLosses,
boolean singleChargeSelected,
boolean doubleChargeSelected,
boolean moreThanTwoChargesSelected)
Deprecated.
don't use method based on the peak labels but on the data
type
|
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