Package | Description |
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com.compomics.util.experiment.biology |
This package contains experiement classes related to biological entities.
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com.compomics.util.experiment.identification |
This package contains experiment classes related to identifications.
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com.compomics.util.experiment.identification.protein_inference.proteintree.kenneth |
Modifier and Type | Method and Description |
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boolean |
Protein.isSameAs(Protein anotherProtein)
A method to compare proteins.
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Modifier and Type | Method and Description |
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Protein |
SequenceFactory.getProtein(java.lang.String accession)
Returns the desired protein.
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Modifier and Type | Field and Description |
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protected java.util.concurrent.BlockingQueue<Protein> |
ProteinTree.SequenceIndexer.proteinQueue
The protein sequence to index.
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Constructor and Description |
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ProteinTree.SequenceIndexer(java.util.concurrent.BlockingQueue<Protein> proteinQueue,
java.util.ArrayList<java.lang.String> tags,
int initialTagSize,
Enzyme enzyme,
WaitingHandler waitingHandler,
boolean displayProgress)
Constructor.
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