public class MDScore
extends java.lang.Object
Constructor and Description |
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MDScore() |
Modifier and Type | Method and Description |
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static java.lang.Double |
getMDScore(SpectrumMatch spectrumMatch,
java.util.ArrayList<java.lang.String> ptms)
Returns the MD score for the best peptide in a spectrum match (the best
peptide has to be set before).
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static java.lang.Double |
getMDScore(SpectrumMatch spectrumMatch,
Peptide peptideCandidate,
java.util.ArrayList<java.lang.String> ptms)
Returns the MD score for the given peptide in a spectrum match.
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public static java.lang.Double getMDScore(SpectrumMatch spectrumMatch, java.util.ArrayList<java.lang.String> ptms)
spectrumMatch
- the spectrum match of interestptms
- the names of the PTMs to scorepublic static java.lang.Double getMDScore(SpectrumMatch spectrumMatch, Peptide peptideCandidate, java.util.ArrayList<java.lang.String> ptms)
peptideCandidate
- the peptide of interestspectrumMatch
- the spectrum match of interestptms
- the names of the PTMs to scoreCopyright © 2013. All Rights Reserved.