Package | Description |
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com.compomics.util.experiment.identification.protein_inference.proteintree.kenneth |
Modifier and Type | Field and Description |
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protected Node |
ProteinTree.PeptideIterator.currentNode
The current node.
|
protected Node |
ProteinTree.PeptideIterator.parentNode
The parent node.
|
Modifier and Type | Field and Description |
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protected java.util.concurrent.ConcurrentHashMap<java.lang.String,Node> |
ProteinTree.tree
The tree containing the accessions indexed by sequence tags.
|
Modifier and Type | Method and Description |
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Node |
ProteinTreeComponentsFactory.getNode(java.lang.String tag)
Retrieves the node of the given tag.
|
protected Node |
ProteinTree.getNode(java.lang.String tag)
Returns a node related to a tag and updates the cache.
|
Node |
Node.getSubNode(java.lang.String sequence)
Returns the subnode associated to an amino acid sequence.
|
Modifier and Type | Method and Description |
---|---|
java.util.HashMap<java.lang.Character,Node> |
Node.getSubtree()
Returns the subtree.
|
Modifier and Type | Method and Description |
---|---|
void |
ProteinTreeComponentsFactory.saveNode(java.lang.String tag,
Node node)
Adds a node to the database.
|
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