Uses of Class
com.compomics.util.experiment.identification.matches.PeptideMatch

Packages that use PeptideMatch
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.experiment.identification.matches This package contains experiment classes releated to matches. 
 

Uses of PeptideMatch in com.compomics.util.experiment.identification
 

Fields in com.compomics.util.experiment.identification with type parameters of type PeptideMatch
protected  HashMap<String,PeptideMatch> Identification.peptideIdentification
          The identification results as a peptide match map, indexed by peptide index
 

Methods in com.compomics.util.experiment.identification that return types with arguments of type PeptideMatch
 HashMap<String,PeptideMatch> Identification.getPeptideIdentification()
          Returns the identification results in a peptide identification map (peptide index -> peptideMatch)
 

Uses of PeptideMatch in com.compomics.util.experiment.identification.matches
 

Methods in com.compomics.util.experiment.identification.matches that return types with arguments of type PeptideMatch
 HashMap<String,PeptideMatch> ProteinMatch.getPeptideMatches()
          getter for the peptide matches
 

Methods in com.compomics.util.experiment.identification.matches with parameters of type PeptideMatch
 void ProteinMatch.addPeptideMatch(PeptideMatch peptideMatch)
          add a subordinated peptide match
 

Constructors in com.compomics.util.experiment.identification.matches with parameters of type PeptideMatch
ProteinMatch(PeptideMatch peptideMatch)
          Constructor for the protein match
 



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