Uses of Class
com.compomics.util.experiment.biology.Ion

Packages that use Ion
com.compomics.util.experiment.biology This package contains experiement classes related to biological entities. 
com.compomics.util.experiment.biology.ions This package contains experiment classes related to ions. 
com.compomics.util.experiment.identification.matches This package contains experiment classes releated to matches. 
 

Uses of Ion in com.compomics.util.experiment.biology
 

Methods in com.compomics.util.experiment.biology that return Ion
static Ion Ion.proton()
          Convenience method returning a proton
 

Uses of Ion in com.compomics.util.experiment.biology.ions
 

Subclasses of Ion in com.compomics.util.experiment.biology.ions
 class Glycon
          This class will models a glycon fragment.
 class PeptideFragmentIon
          This class models a peptide fragment ion.
 class Proton
          This class represents a proton
 class ReporterIon
          This class models a reporter ion.
 

Uses of Ion in com.compomics.util.experiment.identification.matches
 

Fields in com.compomics.util.experiment.identification.matches declared as Ion
 Ion IonMatch.ion
          The matching ion
 

Constructors in com.compomics.util.experiment.identification.matches with parameters of type Ion
IonMatch(Peak aPeak, Ion anIon, Charge aCharge)
          Constructor for an ion peak.
 



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