Uses of Class
com.compomics.util.experiment.massspectrometry.Peak

Packages that use Peak
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.experiment.identification.matches This package contains experiment classes releated to matches. 
com.compomics.util.experiment.massspectrometry This package contains experiment classes related to spectra. 
 

Uses of Peak in com.compomics.util.experiment.identification
 

Methods in com.compomics.util.experiment.identification with parameters of type Peak
 ArrayList<IonMatch> SpectrumAnnotator.matchPeak(Peptide peptide, ArrayList<PeptideFragmentIon.PeptideFragmentIonType> iontypes, ArrayList<Integer> charges, HashMap<NeutralLoss,Integer> neutralLosses, Peak peak, double massTolerance)
          This method matches the potential fragment ions of a given peptide with a given peak.
 

Uses of Peak in com.compomics.util.experiment.identification.matches
 

Fields in com.compomics.util.experiment.identification.matches declared as Peak
 Peak IonMatch.peak
          The matched peak
 

Constructors in com.compomics.util.experiment.identification.matches with parameters of type Peak
IonMatch(Peak aPeak, Ion anIon, Charge aCharge)
          Constructor for an ion peak.
 

Uses of Peak in com.compomics.util.experiment.massspectrometry
 

Fields in com.compomics.util.experiment.massspectrometry with type parameters of type Peak
protected  HashSet<Peak> Spectrum.peakList
          peak list
 

Methods in com.compomics.util.experiment.massspectrometry that return types with arguments of type Peak
 HashSet<Peak> Spectrum.getPeakList()
          Returns the peak list.
 HashMap<Double,Peak> Spectrum.getPeakMap()
          Returns a peak map.
 

Methods in com.compomics.util.experiment.massspectrometry with parameters of type Peak
 boolean Peak.isSameAs(Peak aPeak)
          Returns true if the peak has the same mz and intensity.
 

Method parameters in com.compomics.util.experiment.massspectrometry with type arguments of type Peak
 void Spectrum.setPeakList(HashSet<Peak> peakList)
          Sets the peak list
 

Constructor parameters in com.compomics.util.experiment.massspectrometry with type arguments of type Peak
MS1Spectrum(String fileName, String spectrumTitle, double scanStartTime, HashSet<Peak> spectrum)
          constructor for an MS1 spectrum
MSnSpectrum(int level, Precursor precursor, String spectrumTitle, HashSet<Peak> spectrum, String fileName)
          constructor for the spectrum
MSnSpectrum(int level, Precursor precursor, String spectrumTitle, HashSet<Peak> spectrum, String fileName, double scanStartTime)
          constructor for the spectrum
 



Copyright © 2011. All Rights Reserved.