com.compomics.util.experiment.io.identifications.idfilereaders
Class MascotIdfileReader

java.lang.Object
  extended by com.compomics.util.experiment.personalization.ExperimentObject
      extended by com.compomics.util.experiment.io.identifications.idfilereaders.MascotIdfileReader
All Implemented Interfaces:
IdfileReader, Serializable, Cloneable

public class MascotIdfileReader
extends ExperimentObject
implements IdfileReader

This reader will import identifications from a Mascot dat file.

Created by IntelliJ IDEA. User: Marc Date: Jun 23, 2010 Time: 9:45:35 AM

See Also:
Serialized Form

Constructor Summary
MascotIdfileReader()
          constructor for the mascotIdileReader
MascotIdfileReader(File aFile)
          Constructor for the MascotIdilereader
 
Method Summary
 HashSet<SpectrumMatch> getAllSpectrumMatches()
          a method to get all the spectrum matches
 String getFileName()
          getter for the file name
 String getMgfFileName()
          get the spectrum file name
 
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject
addUrParam, getUrParam
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

MascotIdfileReader

public MascotIdfileReader()
constructor for the mascotIdileReader


MascotIdfileReader

public MascotIdfileReader(File aFile)
Constructor for the MascotIdilereader

Parameters:
aFile - a file to read
Method Detail

getMgfFileName

public String getMgfFileName()
get the spectrum file name

Returns:
the spectrum file name

getFileName

public String getFileName()
getter for the file name

Returns:
the file name

getAllSpectrumMatches

public HashSet<SpectrumMatch> getAllSpectrumMatches()
a method to get all the spectrum matches

Specified by:
getAllSpectrumMatches in interface IdfileReader
Returns:
a set containing all spectrum matches


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