Uses of Class
com.compomics.util.experiment.identification.matches.ProteinMatch

Packages that use ProteinMatch
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.experiment.identification.matches This package contains experiment classes releated to matches. 
 

Uses of ProteinMatch in com.compomics.util.experiment.identification
 

Fields in com.compomics.util.experiment.identification with type parameters of type ProteinMatch
protected  HashMap<String,ProteinMatch> Identification.proteinIdentification
          The identification results as a proteine match map, indexed by protein accession.
protected  HashMap<String,ArrayList<ProteinMatch>> Identification.proteinMap
          a map linking protein accessions to all their protein matches
 

Methods in com.compomics.util.experiment.identification that return types with arguments of type ProteinMatch
 HashMap<String,ProteinMatch> Identification.getProteinIdentification()
          Returns the identification results associated to the corresponding method in a protein identification map (accession -> protein match).
 HashMap<String,ArrayList<ProteinMatch>> Identification.getProteinMap()
          Returns a map of all the protein matches which can be ascribed to a protein indexed by its accession.
 

Uses of ProteinMatch in com.compomics.util.experiment.identification.matches
 

Methods in com.compomics.util.experiment.identification.matches that return ProteinMatch
 ProteinMatch ProteinMatch.getComplementMatch(ProteinMatch proteinMatch)
          returns a proteinMatch complementary to the protein match given Example: if the protein match was identified on proteins A, B and C; if the given match was identified on A; the method returns a protein match with B and C.
 

Methods in com.compomics.util.experiment.identification.matches with parameters of type ProteinMatch
 boolean ProteinMatch.contains(ProteinMatch proteinMatch)
          Returns a boolean indicating whether the protein match contains another set of theoretic proteins.
 ProteinMatch ProteinMatch.getComplementMatch(ProteinMatch proteinMatch)
          returns a proteinMatch complementary to the protein match given Example: if the protein match was identified on proteins A, B and C; if the given match was identified on A; the method returns a protein match with B and C.
 



Copyright © 2011. All Rights Reserved.