Uses of Package
com.compomics.util.protein

Packages that use com.compomics.util.protein
com.compomics.util.experiment.biology This package contains experiement classes related to biological entities. 
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.general The classes in this package focus mainly on very general, top-level tasks that are used throughout the other packages in the util section. 
com.compomics.util.gui.spectrum This package contains GUI classes related to Spectrum and Chromatogram visualization. 
com.compomics.util.io This package contains classes related to input/output. 
com.compomics.util.nucleotide The classes in this package concern useful Objects and their operations for modelling and handling nucleotides. 
com.compomics.util.protein The classes in this package concern useful Objects and their operations for modelling and handling proteins. 
 

Classes in com.compomics.util.protein used by com.compomics.util.experiment.biology
Header.DatabaseType
          A list of the database types.
 

Classes in com.compomics.util.protein used by com.compomics.util.experiment.identification
Header
          This class represents the header for a Protein instance.
 

Classes in com.compomics.util.protein used by com.compomics.util.general
MolecularFormula
          This class represents the molecular formula.
 

Classes in com.compomics.util.protein used by com.compomics.util.gui.spectrum
AASequenceImpl
          This class represents a sequence for a protein or peptide.
 

Classes in com.compomics.util.protein used by com.compomics.util.io
Enzyme
          This class implements the functionality for an Enzyme.
 

Classes in com.compomics.util.protein used by com.compomics.util.nucleotide
Header
          This class represents the header for a Protein instance.
Protein
          This class implements the behaviour for a Protein instance.
AASequenceImpl
          This class represents a sequence for a protein or peptide.
 

Classes in com.compomics.util.protein used by com.compomics.util.protein
Enzyme
          This class implements the functionality for an Enzyme.
Header
          This class represents the header for a Protein instance.
Header.DatabaseType
          A list of the database types.
ModificationTemplate
          This class holds a template for a Modification, meaning that it contains all shared characteristics of a Modification, but not the instance-specific one.
MolecularFormula
          This class represents the molecular formula.
Protein
          This class implements the behaviour for a Protein instance.
AASequenceImpl
          This class represents a sequence for a protein or peptide.
 



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