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java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.biology.Ion
com.compomics.util.experiment.biology.ions.ReporterIon
public class ReporterIon
This class models a reporter ion. Ion indexes should be the rounded mass. User: Marc Date: Sep 1, 2010 Time: 1:44:59 PM
Field Summary | |
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static int |
ITRAQ_113
Reporter ion index iTRAQ 113 |
static int |
ITRAQ_114
Reporter ion index iTRAQ 114 |
static int |
ITRAQ_115
Reporter ion index iTRAQ 115 |
static int |
ITRAQ_116
Reporter ion index iTRAQ 116 |
static int |
ITRAQ_117
Reporter ion index iTRAQ 117 |
static int |
ITRAQ_118
Reporter ion index iTRAQ 118 |
static int |
ITRAQ_119
Reporter ion index iTRAQ 119 |
static int |
ITRAQ_121
Reporter ion index iTRAQ 121 |
static int |
TMT0
Reporter ion index TMT 0 |
static int |
TMT1
Reporter ion index TMT 1 |
static int |
TMT2
Reporter ion index TMT 2 |
static int |
TMT3
Reporter ion index TMT 3 |
static int |
TMT4
Reporter ion index TMT 4 |
static int |
TMT5
Reporter ion index TMT 5 |
Fields inherited from class com.compomics.util.experiment.biology.Ion |
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ELEMENTARY_ION, familyType, GLYCON_FRAGMENT, PEPTIDE_FRAGMENT, REPORTER_ION, theoreticMass |
Constructor Summary | |
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ReporterIon(int index)
Constructor for a reporter ion |
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ReporterIon(int index,
String name,
double mass)
Constructor for a user-defined reporter ion |
Method Summary | |
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int |
getIndex()
Getter for the ion type |
String |
getName()
This method returns the name of the reporter ion |
void |
setMass(double referenceMass)
Method to set the mass of the reporter ion |
Methods inherited from class com.compomics.util.experiment.biology.Ion |
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getIonFamilyType, proton |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
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addUrParam, getParameterKey, getUrParam |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final int ITRAQ_113
public static final int ITRAQ_114
public static final int ITRAQ_115
public static final int ITRAQ_116
public static final int ITRAQ_117
public static final int ITRAQ_118
public static final int ITRAQ_119
public static final int ITRAQ_121
public static final int TMT0
public static final int TMT1
public static final int TMT2
public static final int TMT3
public static final int TMT4
public static final int TMT5
Constructor Detail |
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public ReporterIon(int index)
index
- reporter ion index according to the static fieldspublic ReporterIon(int index, String name, double mass)
index
- index of the reporter ion (for user-defined ions avoid static fields index)name
- name of the reporter ionmass
- theoretic mass of the reporter ionMethod Detail |
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public int getIndex()
public String getName()
public void setMass(double referenceMass)
referenceMass
- the mass where the reporter ions should be found
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