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java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.quantification.reporterion.QuantificationMatch
com.compomics.util.experiment.quantification.reporterion.quantification.PsmQuantification
public class PsmQuantification
This class models the quantification at the MS2 spectrum level.
Field Summary |
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Fields inherited from class com.compomics.util.experiment.quantification.reporterion.QuantificationMatch |
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ratios |
Constructor Summary | |
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PsmQuantification(String spectrumKey,
String spectrumMatchKey)
Constructor for a spectrumQuantification |
Method Summary | |
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void |
addIonMatch(int reporterIndex,
IonMatch match)
Method to add a match between a peak and a reporter ion |
String |
getKey()
returns the key of a match |
HashMap<Integer,IonMatch> |
getReporterMatches()
Getter for the reporter matches |
String |
getSpectrumMatchKey()
Getter for the key of the spectrum match |
Methods inherited from class com.compomics.util.experiment.quantification.reporterion.QuantificationMatch |
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addRatio, getRatios, setRatios |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
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addUrParam, getParameterKey, getUrParam |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public PsmQuantification(String spectrumKey, String spectrumMatchKey)
spectrumKey
- the corresponding spectrumMethod Detail |
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public void addIonMatch(int reporterIndex, IonMatch match)
reporterIndex
- static index of the reporter ionmatch
- The corresponding ion matchpublic String getKey()
QuantificationMatch
getKey
in class QuantificationMatch
public String getSpectrumMatchKey()
public HashMap<Integer,IonMatch> getReporterMatches()
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