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java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.identification.matches.ModificationMatch
public class ModificationMatch
This class models the match between theoretic ptm and identification results.
Created by IntelliJ IDEA. User: Marc Date: Jun 23, 2010 Time: 1:23:45 PM
Constructor Summary | |
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ModificationMatch(String theoreticPtm,
boolean variable,
int modifiedSite)
constructor for a modification match |
Method Summary | |
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int |
getModificationSite()
getter for the modification site, 1 is the first amino acid. |
String |
getTheoreticPtm()
getter for the theoretic PTM name |
boolean |
isVariable()
returns a boolean indicating if the modification is variable |
void |
setTheoreticPtm(String ptm)
Sets the theoretic PTM |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
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addUrParam, getParameterKey, getUrParam |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public ModificationMatch(String theoreticPtm, boolean variable, int modifiedSite)
theoreticPtm
- the theoretic PTMvariable
- true for variable modifications, false otherwisemodifiedSite
- the position of the modification in the sequenceMethod Detail |
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public boolean isVariable()
public String getTheoreticPtm()
public void setTheoreticPtm(String ptm)
ptm
- the theoretic PTM namepublic int getModificationSite()
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