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Packages that use PTM | |
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com.compomics.util.experiment.biology | This package contains experiement classes related to biological entities. |
com.compomics.util.experiment.identification.matches | This package contains experiment classes releated to matches. |
Uses of PTM in com.compomics.util.experiment.biology |
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Methods in com.compomics.util.experiment.biology that return PTM | |
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PTM |
PTMFactory.getPTM(double mass,
String location,
String sequence)
getter for a ptm according to its measured characteristics /!\ This method can generate inconsistent results in case a measurement matches to various PTMs. |
PTM |
PTMFactory.getPTM(int index)
get a PTM according to its index |
PTM |
PTMFactory.getPTM(String name)
Returns the PTM indexed by its name |
Methods in com.compomics.util.experiment.biology that return types with arguments of type PTM | |
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Iterator<PTM> |
PTMFactory.getPtmIterator()
returns an iterator on the imported PTM |
HashMap<Integer,PTM> |
PTMFactory.getPtmMap()
getter for the index to PTM map |
Uses of PTM in com.compomics.util.experiment.identification.matches |
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Methods in com.compomics.util.experiment.identification.matches that return PTM | |
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PTM |
ModificationMatch.getTheoreticPtm()
getter for the theoretic PTM |
Methods in com.compomics.util.experiment.identification.matches with parameters of type PTM | |
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void |
ModificationMatch.setTheoreticPtm(PTM ptm)
Sets the theoretic PTM |
Constructors in com.compomics.util.experiment.identification.matches with parameters of type PTM | |
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ModificationMatch(PTM theoreticPtm,
boolean variable,
int modifiedSite)
constructor for a modification match |
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