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See:
Description
Class Summary | |
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AASequenceImpl | This class represents a sequence for a protein or peptide. |
DualEnzyme | This class implements an enzyme with a dual specificity; the N-terminus of a resultant peptide will have certain residue, the C-terminus will have another, eg. |
Enzyme | This class implements the functionality for an Enzyme. |
Header | This class represents the header for a Protein instance. |
ModificationFactory | This class can be used to generate a Modification instance from a code or title. |
ModificationImplementation | This class implements a specific Modification. |
ModificationTemplate | This class holds a template for a Modification, meaning that it contains all shared characteristics of a Modification, but not the instance-specific one. |
MolecularFormula | This class represents the molecular formula. |
Protein | This class implements the behaviour for a Protein instance. |
RegExEnzyme | This class implements the functionality of an Enzyme by simulating digestion based on a regular expression. |
The classes in this package concern useful Objects and their operations for modelling and handling proteins.
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