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java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.quantification.reporterion.quantification.PeptideQuantification
public class PeptideQuantification
This class models quantification at the peptide level.
Constructor Summary | |
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PeptideQuantification(String peptideKey)
Constructor for the peptide quantification |
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PeptideQuantification(String peptideKey,
HashMap<String,PsmQuantification> psmQuantification)
Constructor for the peptide quantification |
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PeptideQuantification(String peptideKey,
HashMap<String,PsmQuantification> psmQuantification,
HashMap<Integer,Ratio> ratios)
Constructor for the peptide quantification |
Method Summary | |
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void |
addPsmQuantification(PsmQuantification newPsmQuantification)
Adds a new psm quantification in the psm quantification map |
String |
getKey()
Returns the key of the peptide quantification |
PsmQuantification |
getPsm(String index)
returns a specific psm quantification |
HashMap<String,PsmQuantification> |
getPsmQuantification()
Getter for the corresponding spectrum quantification |
HashMap<Integer,Ratio> |
getRatios()
Getter for the peptide ratios |
void |
setPeptideRatios(HashMap<Integer,Ratio> ratios)
sets new peptide ratios |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
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addUrParam, getParameterKey, getUrParam |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public PeptideQuantification(String peptideKey)
peptideKey
- the key of the identification peptide matchpublic PeptideQuantification(String peptideKey, HashMap<String,PsmQuantification> psmQuantification)
peptideKey
- the key of the identification peptide matchpsmQuantification
- the corresponding spectrum quantificationpublic PeptideQuantification(String peptideKey, HashMap<String,PsmQuantification> psmQuantification, HashMap<Integer,Ratio> ratios)
peptideKey
- the identification peptide matchpsmQuantification
- the corresponding spectrum quantificationratios
- the estimated ratiosMethod Detail |
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public void setPeptideRatios(HashMap<Integer,Ratio> ratios)
ratios
- the new peptide ratiospublic HashMap<Integer,Ratio> getRatios()
public HashMap<String,PsmQuantification> getPsmQuantification()
public PsmQuantification getPsm(String index)
index
- the index of the quantification
public void addPsmQuantification(PsmQuantification newPsmQuantification)
newPsmQuantification
- the new psm quantificationpublic String getKey()
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