com.compomics.util.experiment.quantification
Class Quantification

java.lang.Object
  extended by com.compomics.util.experiment.personalization.ExperimentObject
      extended by com.compomics.util.experiment.quantification.Quantification
All Implemented Interfaces:
Serializable, Cloneable
Direct Known Subclasses:
ReporterIonQuantification

public abstract class Quantification
extends ExperimentObject

This class contains quantification results. User: Marc Date: Nov 11, 2010 Time: 3:46:24 PM

See Also:
Serialized Form

Field Summary
protected  int methodUsed
          The quantification method used
protected  HashMap<String,ProteinQuantification> proteinQuantification
          The protein quantification
 
Constructor Summary
Quantification()
           
 
Method Summary
 void addProteinQuantification(ProteinQuantification aProteinQuantification)
          Add protein quantification to the experiment
 int getMethodUsed()
          getter for the method used
 HashMap<String,ProteinQuantification> getProteinQuantification()
          This method retrieves the quantification result at the protein level
 ProteinQuantification getProteinQuantification(String index)
          returns a specific protein quantification
 void setMethodUsed(int methodUsed)
          setter for the method used
 
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject
addUrParam, getParameterKey, getUrParam
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

methodUsed

protected int methodUsed
The quantification method used


proteinQuantification

protected HashMap<String,ProteinQuantification> proteinQuantification
The protein quantification

Constructor Detail

Quantification

public Quantification()
Method Detail

getProteinQuantification

public HashMap<String,ProteinQuantification> getProteinQuantification()
This method retrieves the quantification result at the protein level

Returns:
quantification at the protein level

getProteinQuantification

public ProteinQuantification getProteinQuantification(String index)
returns a specific protein quantification

Parameters:
index - the index of the desired protein quantification
Returns:
the desired proteins quantification

addProteinQuantification

public void addProteinQuantification(ProteinQuantification aProteinQuantification)
Add protein quantification to the experiment

Parameters:
aProteinQuantification - The corresponding protein quantification

getMethodUsed

public int getMethodUsed()
getter for the method used

Returns:
the method used

setMethodUsed

public void setMethodUsed(int methodUsed)
setter for the method used

Parameters:
methodUsed - the method used


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