com.compomics.util.experiment.io.identifications.idfilereaders
Class XTandemIdfileReader

java.lang.Object
  extended by com.compomics.util.experiment.personalization.ExperimentObject
      extended by com.compomics.util.experiment.io.identifications.idfilereaders.XTandemIdfileReader
All Implemented Interfaces:
IdfileReader, java.io.Serializable, java.lang.Cloneable

public class XTandemIdfileReader
extends ExperimentObject
implements IdfileReader

This reader will import identifications from an X!Tandem xml result file.

Created by IntelliJ IDEA. User: Marc Date: Jun 23, 2010 Time: 9:45:54 AM

See Also:
Serialized Form

Constructor Summary
XTandemIdfileReader()
          Constructor for the reader
XTandemIdfileReader(java.io.File aFile)
          constructor for the reader
 
Method Summary
 java.util.HashSet<SpectrumMatch> getAllSpectrumMatches()
          Method which returns all spectrum matches found in the file.
 java.lang.String getFileName()
          getter for the file name
 
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject
addUrParam, getParameterKey, getUrParam
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

XTandemIdfileReader

public XTandemIdfileReader()
Constructor for the reader


XTandemIdfileReader

public XTandemIdfileReader(java.io.File aFile)
                    throws org.xml.sax.SAXException
constructor for the reader

Parameters:
aFile - the inspected file
Throws:
org.xml.sax.SAXException
Method Detail

getFileName

public java.lang.String getFileName()
getter for the file name

Returns:
the file name

getAllSpectrumMatches

public java.util.HashSet<SpectrumMatch> getAllSpectrumMatches()
Method which returns all spectrum matches found in the file.

Specified by:
getAllSpectrumMatches in interface IdfileReader
Returns:
a set containing all spectrum matches


Copyright © 2011. All Rights Reserved.