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java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.quantification.reporterion.quantification.ProteinQuantification
public class ProteinQuantification
This class models the quantification results for a protein match. User: Marc Date: Sep 1, 2010 Time: 3:31:25 PM
Constructor Summary | |
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ProteinQuantification(java.lang.String proteinKey)
Constructor for the protein quantification |
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ProteinQuantification(java.lang.String proteinKey,
java.util.HashMap<java.lang.String,PeptideQuantification> peptideQuantification)
Constructor for the protein quantification |
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ProteinQuantification(java.lang.String proteinKey,
java.util.HashMap<java.lang.String,PeptideQuantification> peptideQuantification,
java.util.HashMap<java.lang.Integer,Ratio> proteinRatios)
Constructor for the protein quantification |
Method Summary | |
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void |
addPeptideQuantification(PeptideQuantification newPeptideQuantification)
Adds a new peptide quantification in the protein quantification |
java.lang.String |
getKey()
Returns the indexing key of the protein quantification |
java.util.HashMap<java.lang.String,PeptideQuantification> |
getPeptideQuantification()
Getter for the corresponding peptide quantification |
PeptideQuantification |
getPeptideQuantification(java.lang.String index)
Returns a specific peptide quantification |
java.util.HashMap<java.lang.Integer,Ratio> |
getProteinRatios()
Getter for the ratios |
void |
setProteinRatios(java.util.HashMap<java.lang.Integer,Ratio> ratios)
sets new protein ratios |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
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addUrParam, getParameterKey, getUrParam |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public ProteinQuantification(java.lang.String proteinKey)
proteinKey
- the identified protein match keypublic ProteinQuantification(java.lang.String proteinKey, java.util.HashMap<java.lang.String,PeptideQuantification> peptideQuantification)
proteinKey
- the identified protein match keypeptideQuantification
- the corresponding peptide quantificationpublic ProteinQuantification(java.lang.String proteinKey, java.util.HashMap<java.lang.String,PeptideQuantification> peptideQuantification, java.util.HashMap<java.lang.Integer,Ratio> proteinRatios)
proteinKey
- the identified protein match keyproteinRatios
- the estimated protein ratiospeptideQuantification
- the corresponding peptide quantificationMethod Detail |
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public void setProteinRatios(java.util.HashMap<java.lang.Integer,Ratio> ratios)
ratios
- estimated protein ratiospublic java.util.HashMap<java.lang.Integer,Ratio> getProteinRatios()
public java.util.HashMap<java.lang.String,PeptideQuantification> getPeptideQuantification()
public PeptideQuantification getPeptideQuantification(java.lang.String index)
index
- the index of the desired peptide quantification
public void addPeptideQuantification(PeptideQuantification newPeptideQuantification)
newPeptideQuantification
- the new peptide quantificationpublic java.lang.String getKey()
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