com.compomics.util.experiment.identification
Class AScore
java.lang.Object
com.compomics.util.experiment.identification.AScore
public class AScore
- extends java.lang.Object
This class scores PTM locations using the A-score.
- Author:
- Marc
Method Summary |
static java.util.HashMap<java.lang.Integer,java.lang.Double> |
getAScore(Peptide peptide,
PTM ptm,
MSnSpectrum spectrum,
java.util.ArrayList<PeptideFragmentIon.PeptideFragmentIonType> expectedFragmentIons,
java.util.HashMap<NeutralLoss,java.lang.Integer> neutralLosses,
java.util.ArrayList<java.lang.Integer> charges,
double intensityLimit,
double mzTolerance)
|
static java.util.HashMap<java.lang.Integer,MSnSpectrum> |
getReducedSpectra(MSnSpectrum baseSpectrum,
double mzTolerance)
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
AScore
public AScore()
getAScore
public static java.util.HashMap<java.lang.Integer,java.lang.Double> getAScore(Peptide peptide,
PTM ptm,
MSnSpectrum spectrum,
java.util.ArrayList<PeptideFragmentIon.PeptideFragmentIonType> expectedFragmentIons,
java.util.HashMap<NeutralLoss,java.lang.Integer> neutralLosses,
java.util.ArrayList<java.lang.Integer> charges,
double intensityLimit,
double mzTolerance)
getReducedSpectra
public static java.util.HashMap<java.lang.Integer,MSnSpectrum> getReducedSpectra(MSnSpectrum baseSpectrum,
double mzTolerance)
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