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Packages that use SpectrumMatch | |
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com.compomics.util.experiment.identification | This package contains experiment classes related to identifications. |
com.compomics.util.experiment.io.identifications | |
com.compomics.util.experiment.io.identifications.idfilereaders | This package contains experiment classes related to reading search engine files. |
Uses of SpectrumMatch in com.compomics.util.experiment.identification |
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Methods in com.compomics.util.experiment.identification that return SpectrumMatch | |
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SpectrumMatch |
Identification.getSpectrumMatch(java.lang.String spectrumKey)
Returns a spectrum match |
Methods in com.compomics.util.experiment.identification with parameters of type SpectrumMatch | |
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void |
Identification.addSpectrumMatch(SpectrumMatch newMatch)
Add a spectrum match to the spectrum matches map. |
Method parameters in com.compomics.util.experiment.identification with type arguments of type SpectrumMatch | |
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void |
Identification.addSpectrumMatch(java.util.Set<SpectrumMatch> spectrumMatches)
Add a set of spectrumMatches to the model |
Uses of SpectrumMatch in com.compomics.util.experiment.io.identifications |
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Methods in com.compomics.util.experiment.io.identifications that return types with arguments of type SpectrumMatch | |
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java.util.HashSet<SpectrumMatch> |
IdfileReader.getAllSpectrumMatches()
This methods retrieves all the identifications from an identification file as a list of spectrum matches |
Uses of SpectrumMatch in com.compomics.util.experiment.io.identifications.idfilereaders |
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Methods in com.compomics.util.experiment.io.identifications.idfilereaders that return types with arguments of type SpectrumMatch | |
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java.util.HashSet<SpectrumMatch> |
XTandemIdfileReader.getAllSpectrumMatches()
Method which returns all spectrum matches found in the file. |
java.util.HashSet<SpectrumMatch> |
OMSSAIdfileReader.getAllSpectrumMatches()
returns all spectrum matches found in the inspected file |
java.util.HashSet<SpectrumMatch> |
MascotIdfileReader.getAllSpectrumMatches()
a method to get all the spectrum matches |
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