Package | Description |
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com.compomics.util.db |
This package contains database related classes.
|
com.compomics.util.experiment.identification |
This package contains experiment classes related to identifications.
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Modifier and Type | Method and Description |
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ObjectsCache |
ObjectsDB.getObjectsCache()
Returns the cache used by this database.
|
Modifier and Type | Method and Description |
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void |
ObjectsDB.establishConnection(String aDbFolder,
boolean deleteOldDatabase,
ObjectsCache objectsCache)
Establishes connection to the database.
|
void |
ObjectsDB.setObjectCache(ObjectsCache objectCache)
Sets the object cache to be used by this database.
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Constructor and Description |
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ObjectsDB(String folder,
String dbName,
boolean deleteOldDatabase,
ObjectsCache objectsCache)
Constructor.
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Modifier and Type | Method and Description |
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void |
Identification.convert(WaitingHandler waitingHandler,
String newDirectory,
String newName,
ObjectsCache objectsCache,
File directory)
Converts a serialization based structure into a database based one.
|
void |
Identification.establishConnection(String dbFolder,
boolean deleteOldDatabase,
ObjectsCache objectsCache)
Establishes a connection to the database.
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Constructor and Description |
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IdentificationDB(String folder,
String name,
boolean deleteOldDatabase,
ObjectsCache objectCache)
Constructor creating the database and the protein and protein parameters
tables.
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