Package | Description |
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com.compomics.util.experiment.identification |
This package contains experiment classes related to identifications.
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com.compomics.util.experiment.identification.identification_parameters |
Modifier and Type | Method and Description |
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IdentificationAlgorithmParameter |
SearchParameters.getIdentificationAlgorithmParameter(int algorithmID)
Returns the algorithm specific parameters, null if not found.
|
Modifier and Type | Method and Description |
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HashMap<Integer,IdentificationAlgorithmParameter> |
SearchParameters.getAlgorithmSpecificParameters()
Returns the algorithm specific parameters in a map: algorithm as indexed
in the Advocate class -> parameters.
|
Modifier and Type | Method and Description |
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boolean |
IdentificationAlgorithmParameter.equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
Indicates whether another identificationAlgorithmParameter has the same
parameters.
|
void |
SearchParameters.setIdentificationAlgorithmParameter(int algorithmID,
IdentificationAlgorithmParameter identificationAlgorithmParameter)
Adds identification algorithm specific paramters
|
Modifier and Type | Class and Description |
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class |
OmssaParameters
The OMSSA specific parameters.
|
class |
PepnovoParameters
PepNovo specific parameters.
|
class |
XtandemParameters
The X!Tandem specific parameters.
|
Modifier and Type | Method and Description |
---|---|
boolean |
XtandemParameters.equals(IdentificationAlgorithmParameter identificationAlgorithmParameter) |
boolean |
PepnovoParameters.equals(IdentificationAlgorithmParameter identificationAlgorithmParameter) |
boolean |
OmssaParameters.equals(IdentificationAlgorithmParameter identificationAlgorithmParameter) |
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