public enum IdentificationParametersCLIParams extends Enum<IdentificationParametersCLIParams>
Modifier and Type | Field and Description |
---|---|
String |
description
Explanation for the CLI parameter.
|
String |
id
Short Id for the CLI parameter.
|
boolean |
mandatory
Boolean indicating whether the parameter is mandatory.
|
Modifier and Type | Method and Description |
---|---|
static IdentificationParametersCLIParams |
valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static IdentificationParametersCLIParams[] |
values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
public static final IdentificationParametersCLIParams OUTPUT
public static final IdentificationParametersCLIParams MODS
public static final IdentificationParametersCLIParams PREC_PPM
public static final IdentificationParametersCLIParams FRAG_PPM
public static final IdentificationParametersCLIParams PREC_TOL
public static final IdentificationParametersCLIParams PREC_TOL_DA
public static final IdentificationParametersCLIParams FRAG_TOL
public static final IdentificationParametersCLIParams ENZYME
public static final IdentificationParametersCLIParams FIXED_MODS
public static final IdentificationParametersCLIParams VARIABLE_MODS
public static final IdentificationParametersCLIParams MIN_CHARGE
public static final IdentificationParametersCLIParams MAX_CHARGE
public static final IdentificationParametersCLIParams MC
public static final IdentificationParametersCLIParams FI
public static final IdentificationParametersCLIParams RI
public static final IdentificationParametersCLIParams DB
public static final IdentificationParametersCLIParams OMSSA_REMOVE_PREC
public static final IdentificationParametersCLIParams OMSSA_SCALE_PREC
public static final IdentificationParametersCLIParams OMSSA_ESTIMATE_CHARGE
public static final IdentificationParametersCLIParams OMSSA_MAX_EVALUE
public static final IdentificationParametersCLIParams OMSSA_HITLIST_LENGTH
public static final IdentificationParametersCLIParams OMSSA_MIN_PEP_LENGTH
public static final IdentificationParametersCLIParams OMSSA_MAX_PEP_LENGTH
public static final IdentificationParametersCLIParams OMSSA_FORMAT
public static final IdentificationParametersCLIParams XTANDEM_DYNAMIC_RANGE
public static final IdentificationParametersCLIParams XTANDEM_NPEAKS
public static final IdentificationParametersCLIParams XTANDEM_MIN_FRAG_MZ
public static final IdentificationParametersCLIParams XTANDEM_MIN_PEAKS
public static final IdentificationParametersCLIParams XTANDEM_NOISE_SUPPRESSION
public static final IdentificationParametersCLIParams XTANDEM_MIN_PREC_MASS
public static final IdentificationParametersCLIParams XTANDEM_QUICK_ACETYL
public static final IdentificationParametersCLIParams XTANDEM_QUICK_PYRO
public static final IdentificationParametersCLIParams XTANDEM_STP_BIAS
public static final IdentificationParametersCLIParams XTANDEM_REFINE
public static final IdentificationParametersCLIParams XTANDEM_REFINE_EVALUE
public static final IdentificationParametersCLIParams XTANDEM_REFINE_UNANTICIPATED_CLEAVAGE
public static final IdentificationParametersCLIParams XTANDEM_REFINE_SEMI
public static final IdentificationParametersCLIParams XTANDEM_REFINE_POTENTIAL_MOD_FULL_REFINEMENT
public static final IdentificationParametersCLIParams XTANDEM_REFINE_POINT_MUTATIONS
public static final IdentificationParametersCLIParams XTANDEM_REFINE_SNAPS
public static final IdentificationParametersCLIParams XTANDEM_REFINE_SPECTRUM_SYNTHESIS
public static final IdentificationParametersCLIParams XTANDEM_EVALUE
public static final IdentificationParametersCLIParams XTANDEM_OUTPUT_PROTEINS
public static final IdentificationParametersCLIParams XTANDEM_OUTPUT_SEQUENCES
public static final IdentificationParametersCLIParams XTANDEM_OUTPUT_SPECTRA
public static final IdentificationParametersCLIParams XTANDEM_SKYLINE
public static final IdentificationParametersCLIParams PEPNOVO_HITLIST_LENGTH
public static final IdentificationParametersCLIParams PEPTNOVO_ESTIMATE_CHARGE
public static final IdentificationParametersCLIParams PEPNOVO_CORRECT_PREC_MASS
public static final IdentificationParametersCLIParams PEPNOVO_DISCARD_SPECTRA
public static final IdentificationParametersCLIParams PEPNOVO_FRAGMENTATION_MODEL
public static final IdentificationParametersCLIParams PEPNOVO_GENERATE_BLAST
public String id
public String description
public boolean mandatory
public static IdentificationParametersCLIParams[] values()
for (IdentificationParametersCLIParams c : IdentificationParametersCLIParams.values()) System.out.println(c);
public static IdentificationParametersCLIParams valueOf(String name)
name
- the name of the enum constant to be returned.IllegalArgumentException
- if this enum type has no constant
with the specified nameNullPointerException
- if the argument is nullCopyright © 2014. All Rights Reserved.