Class and Description |
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Identification
This class contains identification results.
|
Class and Description |
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SearchParameters
This class groups the parameters used for identification.
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Class and Description |
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Advocate
The advocate of a hit can be a search engine, a re-scoring algorithm, etc.
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FastaIndex
This class contains the index of a FASTA file.
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IdentificationAlgorithmParameter
Interface for the algorithm specific parameters.
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IdentificationMatch
This is an abstract class for an identification match.
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IdentificationMatch.MatchType
The type of match.
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NeutralLossesMap
This class contains the informations relative to the accounting of neutral
losses
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SearchParameters
This class groups the parameters used for identification.
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SearchParameters.MassAccuracyType
Possible mass accuracy types.
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SearchParameters.PrecursorAccuracyType
Deprecated.
use MassAccuracyType
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SequenceFactory
Factory retrieving the information of the loaded FASTA file.
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SequenceFactory.HeaderIterator
Convenience iterator iterating the headers of a FASTA file without using
the cache.
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SequenceFactory.ProteinIterator
Convenience iterator iterating all proteins in a FASTA file without using
index or cache.
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SpectrumIdentificationAssumption
Spectrum identification assumption made by an identification algorithm.
|
Class and Description |
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Advocate
The advocate of a hit can be a search engine, a re-scoring algorithm, etc.
|
IdentificationAlgorithmParameter
Interface for the algorithm specific parameters.
|
Class and Description |
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Identification
This class contains identification results.
|
Class and Description |
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IdentificationMatch
This is an abstract class for an identification match.
|
IdentificationMatch.MatchType
The type of match.
|
PeptideAssumption
This object will models the assumption made by an advocate.
|
SpectrumIdentificationAssumption
Spectrum identification assumption made by an identification algorithm.
|
Class and Description |
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NeutralLossesMap
This class contains the informations relative to the accounting of neutral
losses
|
Class and Description |
---|
NeutralLossesMap
This class contains the informations relative to the accounting of neutral
losses
|
Class and Description |
---|
NeutralLossesMap
This class contains the informations relative to the accounting of neutral
losses
|
Class and Description |
---|
SearchParameters
This class groups the parameters used for identification.
|
Class and Description |
---|
NeutralLossesMap
This class contains the informations relative to the accounting of neutral
losses
|
SpectrumAnnotator
The spectrum annotator annotates peaks in a spectrum.
|
Class and Description |
---|
SearchParameters
This class groups the parameters used for identification.
|
Class and Description |
---|
SearchParameters
This class groups the parameters used for identification.
|
Class and Description |
---|
NeutralLossesMap
This class contains the informations relative to the accounting of neutral
losses
|
Class and Description |
---|
NeutralLossesMap
This class contains the informations relative to the accounting of neutral
losses
|
PeptideAssumption
This object will models the assumption made by an advocate.
|
SearchParameters
This class groups the parameters used for identification.
|
SpectrumIdentificationAssumption
Spectrum identification assumption made by an identification algorithm.
|
Class and Description |
---|
SearchParameters
This class groups the parameters used for identification.
|
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