Package | Description |
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com.compomics.util.experiment.io.massspectrometry | |
com.compomics.util.experiment.massspectrometry |
This package contains experiment classes related to spectra.
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Modifier and Type | Method and Description |
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static Precursor |
MgfReader.getPrecursor(uk.ac.ebi.pride.tools.braf.BufferedRandomAccessFile bufferedRandomAccessFile,
Long index,
String fileName)
Returns the next precursor starting from the given index.
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Modifier and Type | Method and Description |
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Precursor |
MSnSpectrum.getPrecursor()
Returns the precursor.
|
Precursor |
SpectrumFactory.getPrecursor(String spectrumKey)
Returns the precursor of the desired spectrum.
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Precursor |
SpectrumFactory.getPrecursor(String spectrumKey,
boolean save)
Returns the precursor of the desired spectrum.
|
Precursor |
SpectrumFactory.getPrecursor(String fileName,
String spectrumTitle)
Returns the precursor of the desired spectrum.
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Precursor |
SpectrumFactory.getPrecursor(String fileName,
String spectrumTitle,
boolean save)
Returns the precursor of the desired spectrum.
|
Precursor |
Precursor.getRecalibratedPrecursor(double mzCorrection,
double rtCorrection)
Returns a recalibrated precursor.
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Modifier and Type | Method and Description |
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void |
MSnSpectrum.setPrecursor(Precursor precursor)
Set the precursor.
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Constructor and Description |
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MSnSpectrum(int level,
Precursor precursor,
String spectrumTitle,
HashMap<Double,Peak> peakMap,
String fileName)
Constructor for the spectrum.
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MSnSpectrum(int level,
Precursor precursor,
String spectrumTitle,
HashMap<Double,Peak> peakMap,
String fileName,
double scanStartTime)
Constructor for the spectrum.
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MSnSpectrum(int level,
Precursor precursor,
String spectrumTitle,
String fileName)
Minimal constructor for the spectrum.
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