public class MsAmandaParameters extends Object implements IdentificationAlgorithmParameter
Constructor and Description |
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MsAmandaParameters()
Constructor.
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Modifier and Type | Method and Description |
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boolean |
equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
Indicates whether another identificationAlgorithmParameter has the same
parameters.
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Advocate |
getAlgorithm()
Returns the identification algorithm.
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boolean |
searchDecoyDatabase()
Returns whether MS-GF+ is to create and search a decoy database.
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void |
setSearchDecoyDatabase(boolean searchDecoyDatabase)
Set whether MS-GF+ is to create and search a decoy database.
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String |
toString(boolean html)
Returns the parameters as a string.
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public Advocate getAlgorithm()
IdentificationAlgorithmParameter
getAlgorithm
in interface IdentificationAlgorithmParameter
public boolean equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
IdentificationAlgorithmParameter
equals
in interface IdentificationAlgorithmParameter
identificationAlgorithmParameter
- the other
identificationAlgorithmParameterpublic String toString(boolean html)
IdentificationAlgorithmParameter
toString
in interface IdentificationAlgorithmParameter
html
- use HTML formattingpublic boolean searchDecoyDatabase()
public void setSearchDecoyDatabase(boolean searchDecoyDatabase)
searchDecoyDatabase
- the searchDecoyDatabase to setCopyright © 2014. All rights reserved.