public interface IdfileReader
Modifier and Type | Method and Description |
---|---|
void |
close()
Closes the file reader.
|
HashSet<SpectrumMatch> |
getAllSpectrumMatches(WaitingHandler waitingHandler)
This methods retrieves all the identifications from an identification
file as a list of spectrum matches It is very important to close the file
reader after creation.
|
String |
getExtension()
This method should return the extension of the file for which this
IdfileReader can be used.
|
String |
getSoftwareVersion()
Returns the name and version of the software used to generate the
identification file, e.g., Mascot 2.3.0 or X! Tandem Sledgehammer
(2013.09.01.1).
|
HashSet<SpectrumMatch> getAllSpectrumMatches(WaitingHandler waitingHandler) throws IOException, IllegalArgumentException, Exception
waitingHandler
- a waiting handler displaying the progress (can be
null). The secondary progress methods will be called.IOException
- exception thrown whenever an error occurred while
reading the fileIllegalArgumentException
- exception thrown whenever an error
occurred while parsing the fileException
- exception thrown whenever an error occurred while
working with the fileString getExtension()
void close() throws IOException
IOException
String getSoftwareVersion()
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