public class Advocate extends Object
Modifier and Type | Class and Description |
---|---|
static class |
Advocate.AdvocateType
The different types of advocates
|
Modifier and Type | Field and Description |
---|---|
static Advocate |
andromeda
The Andromeda search engine.
|
static Advocate |
direcTag
The DirecTag sequencing algorithm.
|
static Advocate |
mascot
The Mascot search engine.
|
static Advocate |
msAmanda
The MS Amanda search engine.
|
static Advocate |
msgf
The MS-GF+ search engine.
|
static Advocate |
omssa
The OMSSA search engine.
|
static Advocate |
pepnovo
The pepnovo+ de novo sequencing algorithm.
|
static Advocate |
peptideShaker
The PeptideShaker multiple algorithm software.
|
static Advocate |
xtandem
The X!Tandem search engine.
|
Modifier and Type | Method and Description |
---|---|
static Advocate |
addUserAdvocate(String advocateName)
Adds a user advocate and returns it.
|
static Advocate |
getAdvocate(int index)
Returns the advocate corresponding to the given index.
|
static Advocate |
getAdvocate(String advocateName)
Returns the advocate with the given name.
|
int |
getIndex()
Returns the index of the advocate.
|
String |
getName()
Returns the name of the advocate.
|
String |
getPmid()
Returns the pubmed id of the reference of the advocate of interest.
|
Advocate.AdvocateType |
getType()
Returns the type of advocate.
|
static HashMap<Integer,Advocate> |
getUserAdvocates()
Returns the map of user advocates imported.
|
static void |
setUserAdvocates(HashMap<Integer,Advocate> userAdvocates)
Returns the map of user advocates imported.
|
static Advocate[] |
values()
Returns the implemented advocates in an array.
|
public static final Advocate mascot
public static final Advocate omssa
public static final Advocate xtandem
public static final Advocate pepnovo
public static final Advocate andromeda
public static final Advocate msAmanda
public static final Advocate peptideShaker
public static final Advocate msgf
public static final Advocate direcTag
public int getIndex()
public String getName()
public Advocate.AdvocateType getType()
public static Advocate[] values()
public static Advocate getAdvocate(int index)
index
- the index of the advocatepublic static Advocate getAdvocate(String advocateName)
advocateName
- the name of the advocate of interestpublic static Advocate addUserAdvocate(String advocateName)
advocateName
- the name of the advocatepublic static HashMap<Integer,Advocate> getUserAdvocates()
public static void setUserAdvocates(HashMap<Integer,Advocate> userAdvocates)
userAdvocates
- the map of user advocatespublic String getPmid()
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