See: Description
Interface | Description |
---|---|
IdentificationAlgorithmParameter |
Interface for the algorithm specific parameters.
|
Class | Description |
---|---|
Advocate |
The advocate of a hit can be a search engine, a sequencing algorithm, a
rescoring algorithm, etc.
|
FastaIndex |
This class contains the index of a FASTA file.
|
Identification |
This class contains identification results.
|
IdentificationDB |
This class uses a database to manage identification matches.
|
IdentificationMatch |
This is an abstract class for an identification match.
|
IdentificationMethod |
This class will contain all methods used to obtain identifications.
|
NeutralLossesMap |
This class contains the informations relative to the accounting of neutral
losses
|
PeptideAssumption |
This object will models the assumption made by an advocate.
|
SearchParameters |
This class groups the parameters used for identification.
|
SequenceFactory |
Factory retrieving the information of the loaded FASTA file.
|
SpectrumAnnotator |
The spectrum annotator annotates peaks in a spectrum.
|
SpectrumIdentificationAssumption |
Spectrum identification assumption made by an identification algorithm.
|
TagAssumption |
This class represent a tag assumption made by an identification algorithm
based on a sequence tag.
|
TagFactory |
Convenience class for sequence tag generation.
|
Enum | Description |
---|---|
Advocate.AdvocateType |
The different types of advocates
|
IdentificationMatch.MatchType |
The type of match.
|
SearchParameters.MassAccuracyType |
Possible mass accuracy types.
|
SearchParameters.PrecursorAccuracyType | Deprecated
use MassAccuracyType
|
Copyright © 2014. All rights reserved.