|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use Peak | |
---|---|
com.compomics.util.experiment.identification | This package contains experiment classes related to identifications. |
com.compomics.util.experiment.identification.matches | This package contains experiment classes releated to matches. e.g., pepties, proteins, modifications and spectra. |
com.compomics.util.experiment.massspectrometry | This package contains experiment classes related to spectra. |
Uses of Peak in com.compomics.util.experiment.identification |
---|
Methods in com.compomics.util.experiment.identification with parameters of type Peak | |
---|---|
ArrayList<IonMatch> |
SpectrumAnnotator.matchPeak(Peptide peptide,
ArrayList<PeptideFragmentIon.PeptideFragmentIonType> iontypes,
ArrayList<Integer> charges,
NeutralLossesMap neutralLosses,
Peak peak,
double massTolerance)
This method matches the potential fragment ions of a given peptide with a given peak. |
Uses of Peak in com.compomics.util.experiment.identification.matches |
---|
Fields in com.compomics.util.experiment.identification.matches declared as Peak | |
---|---|
Peak |
IonMatch.peak
The matched peak |
Constructors in com.compomics.util.experiment.identification.matches with parameters of type Peak | |
---|---|
IonMatch(Peak aPeak,
Ion anIon,
Charge aCharge)
Constructor for an ion peak. |
Uses of Peak in com.compomics.util.experiment.massspectrometry |
---|
Fields in com.compomics.util.experiment.massspectrometry with type parameters of type Peak | |
---|---|
protected HashSet<Peak> |
Spectrum.peakList
peak list |
Methods in com.compomics.util.experiment.massspectrometry that return types with arguments of type Peak | |
---|---|
HashSet<Peak> |
Spectrum.getPeakList()
Returns the peak list. |
HashMap<Double,Peak> |
Spectrum.getPeakMap()
Returns a peak map where peaks are indexed by their m/z. |
Methods in com.compomics.util.experiment.massspectrometry with parameters of type Peak | |
---|---|
void |
Spectrum.addPeak(Peak aPeak)
Adds a peak to the spectrum peak list |
boolean |
Peak.isSameAs(Peak aPeak)
Returns true if the peak has the same mz and intensity. |
Method parameters in com.compomics.util.experiment.massspectrometry with type arguments of type Peak | |
---|---|
void |
Spectrum.setPeakList(HashSet<Peak> peakList)
Sets the peak list |
Constructor parameters in com.compomics.util.experiment.massspectrometry with type arguments of type Peak | |
---|---|
MS1Spectrum(String fileName,
String spectrumTitle,
double scanStartTime,
HashSet<Peak> spectrum)
constructor for an MS1 spectrum |
|
MSnSpectrum(int level,
Precursor precursor,
String spectrumTitle,
HashSet<Peak> spectrum,
String fileName)
constructor for the spectrum |
|
MSnSpectrum(int level,
Precursor precursor,
String spectrumTitle,
HashSet<Peak> spectrum,
String fileName,
double scanStartTime)
constructor for the spectrum |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |