Package com.compomics.util.experiment.identification

This package contains experiment classes related to identifications.

See:
          Description

Interface Summary
Advocate The advocate of a hit can be a search engine, a rescoring algorithm, etc.
 

Class Summary
AdvocateFactory This factory will provide adapted advocates when requested.
FastaIndex This class contains the index of a fasta file
Identification This class contains identification results.
IdentificationMatch This is an abstract class for an identification match
IdentificationMethod This class will contain all methods used to obtain identifications.
NeutralLossesMap This class contains the informations relative to the accounting of neutral losses
PeptideAssumption This object will models the assumption made by an advocate.
PTMLocationScores This class scores PTM locations using various A-scores.
SequenceFactory Factory retrieving the information of the loaded FASTA file
SpectrumAnnotator The spectrum annotator annotates peaks in a spectrum.
 

Package com.compomics.util.experiment.identification Description

This package contains experiment classes related to identifications.



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