com.compomics.util.experiment.quantification.reporterion
Class ReporterMethod

java.lang.Object
  extended by com.compomics.util.experiment.personalization.ExperimentObject
      extended by com.compomics.util.experiment.quantification.QuantificationMethod
          extended by com.compomics.util.experiment.quantification.reporterion.ReporterMethod
All Implemented Interfaces:
Serializable, Cloneable

public class ReporterMethod
extends QuantificationMethod

This class models a reporter quantification method. User: Marc Date: Sep 29, 2010 Time: 5:52:30 PM

See Also:
Serialized Form

Field Summary
 
Fields inherited from class com.compomics.util.experiment.quantification.QuantificationMethod
index, ITRAQ_4PLEX, ITRAQ_8PLEX, name, TMT2, TMT6
 
Constructor Summary
ReporterMethod(int index, String name, ArrayList<ReporterIon> reporterIons, ArrayList<CorrectionFactor> correctionFactors)
          Constructor for a reporter method
 
Method Summary
 ArrayList<CorrectionFactor> getCorrectionFactors()
          Returns the correction factors corresponding to the reporter ions
 int getIndex()
          returns the index of the method
 ArrayList<ReporterIon> getReporterIons()
          Returns the reporter ions used
 
Methods inherited from class com.compomics.util.experiment.quantification.QuantificationMethod
getMethodIndex, getMethodName
 
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject
addUrParam, getParameterKey, getUrParam
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

ReporterMethod

public ReporterMethod(int index,
                      String name,
                      ArrayList<ReporterIon> reporterIons,
                      ArrayList<CorrectionFactor> correctionFactors)
Constructor for a reporter method

Parameters:
index - the index of the method
name - the name of the method
reporterIons - the reporter ions used
correctionFactors - the correction factors corresponding to the reporter ions
Method Detail

getReporterIons

public ArrayList<ReporterIon> getReporterIons()
Returns the reporter ions used

Returns:
the reporter ions used

getCorrectionFactors

public ArrayList<CorrectionFactor> getCorrectionFactors()
Returns the correction factors corresponding to the reporter ions

Returns:
the correction factors corresponding to the reporter ions

getIndex

public int getIndex()
returns the index of the method

Returns:
the index of the method


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