Uses of Package
com.compomics.util.experiment.identification.matches

Packages that use com.compomics.util.experiment.identification.matches
com.compomics.util.experiment.biology This package contains experiement classes related to biological entities. 
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.experiment.identification.matches This package contains experiment classes releated to matches. e.g., pepties, proteins, modifications and spectra. 
com.compomics.util.experiment.identification.ptm   
com.compomics.util.experiment.io.identifications   
com.compomics.util.experiment.io.identifications.idfilereaders This package contains experiment classes related to reading search engine files. 
com.compomics.util.experiment.quantification.reporterion.quantification This package contains experiment classes related to quantification by reporter ions. 
com.compomics.util.gui.spectrum This package contains GUI classes related to Spectrum and Chromatogram visualization. 
 

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.biology
ModificationMatch
          This class models the match between theoretic ptm and identification results.
 

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification
IonMatch
          This class will model the assignment of a peak to a theoretical ion.
PeptideMatch
          This class models a peptide match.
ProteinMatch
          This class models a protein match.
SpectrumMatch
          This class models a spectrum match.
 

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.matches
ProteinMatch
          This class models a protein match.
 

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.ptm
IonMatch
          This class will model the assignment of a peak to a theoretical ion.
 

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.io.identifications
SpectrumMatch
          This class models a spectrum match.
 

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.io.identifications.idfilereaders
SpectrumMatch
          This class models a spectrum match.
 

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.quantification.reporterion.quantification
IonMatch
          This class will model the assignment of a peak to a theoretical ion.
 

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.gui.spectrum
IonMatch
          This class will model the assignment of a peak to a theoretical ion.
 



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