Uses of Class
com.compomics.util.experiment.identification.matches.SpectrumMatch

Packages that use SpectrumMatch
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.experiment.io.identifications   
com.compomics.util.experiment.io.identifications.idfilereaders This package contains experiment classes related to reading search engine files. 
 

Uses of SpectrumMatch in com.compomics.util.experiment.identification
 

Methods in com.compomics.util.experiment.identification that return SpectrumMatch
 SpectrumMatch Identification.getSpectrumMatch(String spectrumKey)
          Returns a spectrum match
 

Methods in com.compomics.util.experiment.identification with parameters of type SpectrumMatch
 void Identification.addSpectrumMatch(SpectrumMatch newMatch)
          Add a spectrum match to the spectrum matches map.
 

Method parameters in com.compomics.util.experiment.identification with type arguments of type SpectrumMatch
 void Identification.addSpectrumMatch(Set<SpectrumMatch> spectrumMatches)
          Add a set of spectrumMatches to the model
 

Uses of SpectrumMatch in com.compomics.util.experiment.io.identifications
 

Methods in com.compomics.util.experiment.io.identifications that return types with arguments of type SpectrumMatch
 HashSet<SpectrumMatch> IdfileReader.getAllSpectrumMatches()
          This methods retrieves all the identifications from an identification file as a list of spectrum matches
 

Uses of SpectrumMatch in com.compomics.util.experiment.io.identifications.idfilereaders
 

Methods in com.compomics.util.experiment.io.identifications.idfilereaders that return types with arguments of type SpectrumMatch
 HashSet<SpectrumMatch> XTandemIdfileReader.getAllSpectrumMatches()
          Method which returns all spectrum matches found in the file.
 HashSet<SpectrumMatch> OMSSAIdfileReader.getAllSpectrumMatches()
          returns all spectrum matches found in the inspected file
 HashSet<SpectrumMatch> MascotIdfileReader.getAllSpectrumMatches()
          a method to get all the spectrum matches
 



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