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java.lang.Objectcom.compomics.util.io.MascotEnzymeReader
public class MascotEnzymeReader
This class will load Enzyme properties from a Mascot (www.matrixscience.com) formatted text file.
Constructor Summary | |
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MascotEnzymeReader(InputStream aEnzymeStream)
The constructor allows you specify to specify an inputstream from which to load the enzyme information. |
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MascotEnzymeReader(String aEnzymeFile)
The constructor requires that you specify the file from which to load the enzyme information. |
Method Summary | |
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Enzyme |
getEnzyme(String aTitle)
This method will return a copy of an Enzyme instance for the given name, or 'null' if the enzyme was not found in the current list. |
String[] |
getEnzymeNames()
This method reports on all the known names for enzymes in this reader. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public MascotEnzymeReader(String aEnzymeFile) throws IOException
aEnzymeFile
- String with the filename of the mascot enzyme file.
IOException
- when the enzyme file could not be read.public MascotEnzymeReader(InputStream aEnzymeStream) throws IOException
aEnzymeStream
- InputStream to the mascot enzyme file.
IOException
- when the enzyme file could not be read.Method Detail |
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public String[] getEnzymeNames()
public Enzyme getEnzyme(String aTitle)
aTitle
- String with the title (name) of the Enzyme to retrieve.
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