Uses of Class
com.compomics.util.experiment.identification.FastaIndex

Packages that use FastaIndex
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
 

Uses of FastaIndex in com.compomics.util.experiment.identification
 

Methods in com.compomics.util.experiment.identification that return FastaIndex
static FastaIndex SequenceFactory.createFastaIndex(File fastaFile)
          Static method to create a FASTA index for a FASTA file.
static FastaIndex SequenceFactory.createFastaIndex(File fastaFile, JProgressBar progressBar)
          Static method to create a FASTA index for a FASTA file.
 FastaIndex SequenceFactory.getFastaIndex(File fastaFile)
          Returns the file index of a FASTA file.
 FastaIndex SequenceFactory.getFastaIndex(File fastaFile, JProgressBar progressBar)
          Returns the file index of a FASTA file.
 FastaIndex SequenceFactory.getIndex(File fastaIndex)
          Deserializes the index of the FASTA file.
 

Methods in com.compomics.util.experiment.identification with parameters of type FastaIndex
 void SequenceFactory.writeIndex(FastaIndex fastaIndex, File directory)
          Serializes the FASTA file index in a given directory.
 



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