|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.io.identifications.idfilereaders.XTandemIdfileReader
public class XTandemIdfileReader
This reader will import identifications from an X!Tandem xml result file.
Created by IntelliJ IDEA. User: Marc Date: Jun 23, 2010 Time: 9:45:54 AM
Constructor Summary | |
---|---|
XTandemIdfileReader()
Constructor for the reader |
|
XTandemIdfileReader(java.io.File aFile)
constructor for the reader |
Method Summary | |
---|---|
void |
close()
Method closing the file reader |
java.util.HashSet<SpectrumMatch> |
getAllSpectrumMatches(javax.swing.JProgressBar jProgressBar)
This methods retrieves all the identifications from an identification file as a list of spectrum matches It is very important to close the file reader after creation. |
java.lang.String |
getFileName()
getter for the file name |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
---|
addUrParam, getParameterKey, getUrParam |
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
---|
public XTandemIdfileReader()
public XTandemIdfileReader(java.io.File aFile) throws org.xml.sax.SAXException
aFile
- the inspected file
org.xml.sax.SAXException
Method Detail |
---|
public java.lang.String getFileName()
public java.util.HashSet<SpectrumMatch> getAllSpectrumMatches(javax.swing.JProgressBar jProgressBar)
IdfileReader
getAllSpectrumMatches
in interface IdfileReader
jProgressBar
- a progress bar displaying the progress (can be null)
public void close() throws java.io.IOException
IdfileReader
close
in interface IdfileReader
java.io.IOException
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |