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java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.io.identifications.idfilereaders.OMSSAIdfileReader
public class OMSSAIdfileReader
This reader will import identifications from an OMSSA omx file. Created by IntelliJ IDEA. User: Marc Date: Jun 23, 2010 Time: 9:45:45 AM
Constructor Summary | |
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OMSSAIdfileReader()
constructor for the reader |
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OMSSAIdfileReader(java.io.File idFile)
Constructor for the reader |
Method Summary | |
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void |
close()
Method closing the file reader |
java.util.HashSet<SpectrumMatch> |
getAllSpectrumMatches(javax.swing.JProgressBar jProgressBar)
This methods retrieves all the identifications from an identification file as a list of spectrum matches It is very important to close the file reader after creation. |
java.lang.String |
getFileName()
get the file name |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
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addUrParam, getParameterKey, getUrParam |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public OMSSAIdfileReader()
public OMSSAIdfileReader(java.io.File idFile)
idFile
- the inspected fileMethod Detail |
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public java.lang.String getFileName()
public java.util.HashSet<SpectrumMatch> getAllSpectrumMatches(javax.swing.JProgressBar jProgressBar)
IdfileReader
getAllSpectrumMatches
in interface IdfileReader
jProgressBar
- a progress bar displaying the progress (can be null)
public void close() throws java.io.IOException
IdfileReader
close
in interface IdfileReader
java.io.IOException
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