com.compomics.util.experiment.identification
Class AAStats

java.lang.Object
  extended by com.compomics.util.experiment.identification.AAStats
All Implemented Interfaces:
java.io.Serializable

public class AAStats
extends java.lang.Object
implements java.io.Serializable

This class contains basic statistics of the amino acid composition of a database. It is its own factory based on the sequenceFactory.

Author:
marc
See Also:
Serialized Form

Constructor Summary
AAStats(javax.swing.JProgressBar progressBar)
           
 
Method Summary
 boolean containsAA(java.lang.String aa)
           
 int getnAA(java.lang.String aa)
           
 int getnAAAfter(java.lang.String aaRef, java.lang.String aaAfter)
           
 int getnAABefore(java.lang.String aaRef, java.lang.String aaBefore)
           
 double getpAA(java.lang.String aa)
           
 double getpAAAfter(java.lang.String aaRef, java.lang.String aaAfter)
           
 double getpAABefore(java.lang.String aaRef, java.lang.String aaBefore)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

AAStats

public AAStats(javax.swing.JProgressBar progressBar)
        throws java.io.IOException
Throws:
java.io.IOException
Method Detail

getnAA

public int getnAA(java.lang.String aa)

getnAAAfter

public int getnAAAfter(java.lang.String aaRef,
                       java.lang.String aaAfter)

containsAA

public boolean containsAA(java.lang.String aa)

getnAABefore

public int getnAABefore(java.lang.String aaRef,
                        java.lang.String aaBefore)

getpAA

public double getpAA(java.lang.String aa)

getpAAAfter

public double getpAAAfter(java.lang.String aaRef,
                          java.lang.String aaAfter)

getpAABefore

public double getpAABefore(java.lang.String aaRef,
                           java.lang.String aaBefore)


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