com.compomics.util.experiment.io.identifications.idfilereaders
Class AndromedaIdfileReader
java.lang.Object
com.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.io.identifications.idfilereaders.AndromedaIdfileReader
- All Implemented Interfaces:
- IdfileReader, java.io.Serializable, java.lang.Cloneable
public class AndromedaIdfileReader
- extends ExperimentObject
- implements IdfileReader
This IdfileReader reads identifications out of an Andromeda result file
- Author:
- Marc
- See Also:
- Serialized Form
Constructor Summary |
AndromedaIdfileReader(java.io.File resFile,
javax.swing.JProgressBar jProgressBar)
Constructor for an Andromeda result file reader. |
Method Summary |
void |
close()
Method closing the file reader |
java.util.HashSet<SpectrumMatch> |
getAllSpectrumMatches(javax.swing.JProgressBar jProgressBar)
This methods retrieves all the identifications from an identification
file as a list of spectrum matches
It is very important to close the file reader after creation. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
AndromedaIdfileReader
public AndromedaIdfileReader(java.io.File resFile,
javax.swing.JProgressBar jProgressBar)
throws java.io.FileNotFoundException,
java.io.IOException
- Constructor for an Andromeda result file reader.
- Parameters:
resFile
- jProgressBar
-
- Throws:
java.io.FileNotFoundException
java.io.IOException
getAllSpectrumMatches
public java.util.HashSet<SpectrumMatch> getAllSpectrumMatches(javax.swing.JProgressBar jProgressBar)
throws java.io.IOException
- Description copied from interface:
IdfileReader
- This methods retrieves all the identifications from an identification
file as a list of spectrum matches
It is very important to close the file reader after creation.
- Specified by:
getAllSpectrumMatches
in interface IdfileReader
- Parameters:
jProgressBar
- a progress bar displaying the progress (can be null)
- Returns:
- a list of spectrum matches
- Throws:
java.io.IOException
- exception thrown whenever an error occurred while reading the file
close
public void close()
throws java.io.IOException
- Description copied from interface:
IdfileReader
- Method closing the file reader
- Specified by:
close
in interface IdfileReader
- Throws:
java.io.IOException
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