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java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.biology.Ion
com.compomics.util.experiment.biology.ions.Glycon
public class Glycon
This class will models a glycon fragment. Created by IntelliJ IDEA. User: Marc Date: Jun 18, 2010 Time: 1:36:49 PM
Field Summary | |
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static int |
DEUTEROACETYLATED_MASS
Final index for deuteroacetylated masses |
static int |
DEUTEROMETHYLATED_MASS
Final index for deuteromethylated masses |
static int |
PERACETYLATED_MASS
Final index for peracetylated masses |
static int |
PERMETHYLATED_MASS
Final index for permethylated masses |
static int |
UNDERIVATED_MASS
Final index for underivated masses |
Fields inherited from class com.compomics.util.experiment.biology.Ion |
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ELEMENTARY_ION, familyType, GLYCON_FRAGMENT, PEPTIDE_FRAGMENT, REPORTER_ION, theoreticMass |
Constructor Summary | |
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Glycon(java.lang.String aName,
java.lang.String aShortName)
Constructor for a glycon |
Method Summary | |
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void |
addMass(int massType,
double value)
Add a mass for this glycon |
double |
getMass(int aType)
Get the glycon mass |
java.lang.String |
getName()
Getter for the glycons name |
java.lang.String |
getShortName()
Getter for the glycons short name |
Methods inherited from class com.compomics.util.experiment.biology.Ion |
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getIonFamilyType, proton |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
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addUrParam, getParameterKey, getUrParam |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final int UNDERIVATED_MASS
public static final int PERMETHYLATED_MASS
public static final int DEUTEROMETHYLATED_MASS
public static final int PERACETYLATED_MASS
public static final int DEUTEROACETYLATED_MASS
Constructor Detail |
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public Glycon(java.lang.String aName, java.lang.String aShortName)
aName
- The name of the glyconaShortName
- A shortened name for the glyconMethod Detail |
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public void addMass(int massType, double value)
massType
- mass type indexed according to the static fieldvalue
- Value of the masspublic double getMass(int aType)
aType
- Type of mass requested indexed according to static int.
public java.lang.String getName()
public java.lang.String getShortName()
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