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java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.biology.Ion
com.compomics.util.experiment.biology.ions.ReporterIon
public class ReporterIon
This class models a reporter ion. Ion indexes should be the rounded mass. User: Marc Date: Sep 1, 2010 Time: 1:44:59 PM
Field Summary | |
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static ReporterIon |
iTRAQ113
Standard reporter ion iTRAQ 113 |
static ReporterIon |
iTRAQ114
Standard reporter ion iTRAQ 114 |
static ReporterIon |
iTRAQ115
Standard reporter ion iTRAQ 115 |
static ReporterIon |
iTRAQ116
Standard reporter ion iTRAQ 116 |
static ReporterIon |
iTRAQ117
Standard reporter ion iTRAQ 117 |
static ReporterIon |
iTRAQ118
Standard reporter ion iTRAQ 118 |
static ReporterIon |
iTRAQ119
Standard reporter ion iTRAQ 119 |
static ReporterIon |
iTRAQ121
Standard reporter ion iTRAQ 121 |
static ReporterIon |
TMT0
Standard reporter ion TMT0 |
static ReporterIon |
TMT1
Standard reporter ion TMT1 |
static ReporterIon |
TMT2
Standard reporter ion TMT2 |
static ReporterIon |
TMT3
Standard reporter ion TMT3 |
static ReporterIon |
TMT4
Standard reporter ion TMT4 |
static ReporterIon |
TMT5
Standard reporter ion TMT5 |
Fields inherited from class com.compomics.util.experiment.biology.Ion |
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ELEMENTARY_ION, familyType, GLYCON_FRAGMENT, PEPTIDE_FRAGMENT, REPORTER_ION, theoreticMass |
Constructor Summary | |
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ReporterIon(java.lang.String name,
double mass)
Constructor for a user-defined reporter ion |
Method Summary | |
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java.lang.String |
getName()
This method returns the name of the reporter ion |
void |
setMass(double referenceMass)
Method to set the mass of the reporter ion |
Methods inherited from class com.compomics.util.experiment.biology.Ion |
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getIonFamilyType, proton |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
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addUrParam, getParameterKey, getUrParam |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final ReporterIon iTRAQ113
public static final ReporterIon iTRAQ114
public static final ReporterIon iTRAQ115
public static final ReporterIon iTRAQ116
public static final ReporterIon iTRAQ117
public static final ReporterIon iTRAQ118
public static final ReporterIon iTRAQ119
public static final ReporterIon iTRAQ121
public static final ReporterIon TMT0
public static final ReporterIon TMT1
public static final ReporterIon TMT2
public static final ReporterIon TMT3
public static final ReporterIon TMT4
public static final ReporterIon TMT5
Constructor Detail |
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public ReporterIon(java.lang.String name, double mass)
name
- name of the reporter ionmass
- theoretic mass of the reporter ionMethod Detail |
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public java.lang.String getName()
public void setMass(double referenceMass)
referenceMass
- the mass where the reporter ions should be found
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