Uses of Class
com.compomics.util.experiment.biology.ions.ReporterIon

Packages that use ReporterIon
com.compomics.util.experiment.biology This package contains experiement classes related to biological entities. 
com.compomics.util.experiment.biology.ions This package contains experiment classes related to ions. 
com.compomics.util.experiment.quantification.reporterion This package contains experiment classes related to reporter ions. 
 

Uses of ReporterIon in com.compomics.util.experiment.biology
 

Methods in com.compomics.util.experiment.biology that return types with arguments of type ReporterIon
 java.util.ArrayList<ReporterIon> PTM.getReporterIons()
          Returns the reporter ions possibly encountered with this modification
 

Method parameters in com.compomics.util.experiment.biology with type arguments of type ReporterIon
 void PTM.setReporterIons(java.util.ArrayList<ReporterIon> reporterIons)
          Sets the reporter ions possibly encountered with this modification
 

Uses of ReporterIon in com.compomics.util.experiment.biology.ions
 

Fields in com.compomics.util.experiment.biology.ions declared as ReporterIon
static ReporterIon ReporterIon.iTRAQ113
          Standard reporter ion iTRAQ 113
static ReporterIon ReporterIon.iTRAQ114
          Standard reporter ion iTRAQ 114
static ReporterIon ReporterIon.iTRAQ115
          Standard reporter ion iTRAQ 115
static ReporterIon ReporterIon.iTRAQ116
          Standard reporter ion iTRAQ 116
static ReporterIon ReporterIon.iTRAQ117
          Standard reporter ion iTRAQ 117
static ReporterIon ReporterIon.iTRAQ118
          Standard reporter ion iTRAQ 118
static ReporterIon ReporterIon.iTRAQ119
          Standard reporter ion iTRAQ 119
static ReporterIon ReporterIon.iTRAQ121
          Standard reporter ion iTRAQ 121
static ReporterIon ReporterIon.TMT0
          Standard reporter ion TMT0
static ReporterIon ReporterIon.TMT1
          Standard reporter ion TMT1
static ReporterIon ReporterIon.TMT2
          Standard reporter ion TMT2
static ReporterIon ReporterIon.TMT3
          Standard reporter ion TMT3
static ReporterIon ReporterIon.TMT4
          Standard reporter ion TMT4
static ReporterIon ReporterIon.TMT5
          Standard reporter ion TMT5
 

Uses of ReporterIon in com.compomics.util.experiment.quantification.reporterion
 

Methods in com.compomics.util.experiment.quantification.reporterion that return types with arguments of type ReporterIon
 java.util.ArrayList<ReporterIon> ReporterMethod.getReporterIons()
          Returns the reporter ions used
 

Constructor parameters in com.compomics.util.experiment.quantification.reporterion with type arguments of type ReporterIon
ReporterMethod(java.lang.String name, java.util.ArrayList<ReporterIon> reporterIons, java.util.ArrayList<CorrectionFactor> correctionFactors)
          Constructor for a reporter method
 



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