Uses of Class
com.compomics.util.experiment.identification.matches.SpectrumMatch

Packages that use SpectrumMatch
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.experiment.io.identifications   
com.compomics.util.experiment.io.identifications.idfilereaders This package contains experiment classes related to reading search engine files. 
 

Uses of SpectrumMatch in com.compomics.util.experiment.identification
 

Methods in com.compomics.util.experiment.identification that return SpectrumMatch
 SpectrumMatch Identification.getSpectrumMatch(java.lang.String spectrumKey)
          Returns a spectrum match.
 

Methods in com.compomics.util.experiment.identification with parameters of type SpectrumMatch
 void Identification.addSpectrumMatch(SpectrumMatch newMatch)
          Add a spectrum match to the spectrum matches map.
 

Method parameters in com.compomics.util.experiment.identification with type arguments of type SpectrumMatch
 void Identification.addSpectrumMatch(java.util.Set<SpectrumMatch> spectrumMatches)
          Add a set of spectrumMatches to the model.
 

Uses of SpectrumMatch in com.compomics.util.experiment.io.identifications
 

Methods in com.compomics.util.experiment.io.identifications that return types with arguments of type SpectrumMatch
 java.util.HashSet<SpectrumMatch> IdfileReader.getAllSpectrumMatches(javax.swing.JProgressBar jProgressBar)
          This methods retrieves all the identifications from an identification file as a list of spectrum matches It is very important to close the file reader after creation.
 

Uses of SpectrumMatch in com.compomics.util.experiment.io.identifications.idfilereaders
 

Methods in com.compomics.util.experiment.io.identifications.idfilereaders that return types with arguments of type SpectrumMatch
 java.util.HashSet<SpectrumMatch> XTandemIdfileReader.getAllSpectrumMatches(javax.swing.JProgressBar jProgressBar)
           
 java.util.HashSet<SpectrumMatch> OMSSAIdfileReader.getAllSpectrumMatches(javax.swing.JProgressBar jProgressBar)
           
 java.util.HashSet<SpectrumMatch> MascotIdfileReader.getAllSpectrumMatches(javax.swing.JProgressBar jProgressBar)
           
 java.util.HashSet<SpectrumMatch> AndromedaIdfileReader.getAllSpectrumMatches(javax.swing.JProgressBar jProgressBar)
           
 



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