Uses of Class
com.compomics.util.protein.Header

Packages that use Header
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.nucleotide The classes in this package concern useful Objects and their operations for modelling and handling nucleotides. 
com.compomics.util.protein The classes in this package concern useful Objects and their operations for modelling and handling proteins. 
 

Uses of Header in com.compomics.util.experiment.identification
 

Methods in com.compomics.util.experiment.identification that return Header
 Header SequenceFactory.getHeader(java.lang.String accession)
          Returns the desired header for the protein in the FASTA file.
 

Uses of Header in com.compomics.util.nucleotide
 

Methods in com.compomics.util.nucleotide that return Header
 Header NucleotideSequence.getHeader()
          This method reports on the nucleotide header.
 

Methods in com.compomics.util.nucleotide with parameters of type Header
 void NucleotideSequence.setHeader(Header aHeader)
          This method sets the header.
 

Constructors in com.compomics.util.nucleotide with parameters of type Header
NucleotideSequence(Header aHeader, NucleotideSequenceImpl aSequence)
          This constructor allows the passing of a Header, as well as an AASequenceImpl for this Protein.
 

Uses of Header in com.compomics.util.protein
 

Methods in com.compomics.util.protein that return Header
 Header Protein.getHeader()
          This method reports on the header for the current protein.
static Header Header.parseFromFASTA(java.lang.String aFASTAHeader)
          Factory method that constructs a Header instance based on a FASTA header line.
 

Methods in com.compomics.util.protein with parameters of type Header
 void Protein.setHeader(Header aHeader)
          Simple setter for the header.
 

Constructors in com.compomics.util.protein with parameters of type Header
Protein(Header aHeader, AASequenceImpl aSequence)
          This constructor allows the passing of a Header, as well as an AASequenceImpl for this Protein.
Protein(Header aHeader, AASequenceImpl aSequence, boolean aTruncated, int aTruncationPosition)
          This constructor allows the passing of a Header, as well as an AASequenceImpl for this Protein.
 



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