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Packages that use FastaIndex | |
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com.compomics.util.experiment.identification | This package contains experiment classes related to identifications. |
Uses of FastaIndex in com.compomics.util.experiment.identification |
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Methods in com.compomics.util.experiment.identification that return FastaIndex | |
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static FastaIndex |
SequenceFactory.createFastaIndex(java.io.File fastaFile)
Static method to create a FASTA index for a FASTA file. |
static FastaIndex |
SequenceFactory.createFastaIndex(java.io.File fastaFile,
javax.swing.JProgressBar progressBar)
Static method to create a FASTA index for a FASTA file. |
FastaIndex |
SequenceFactory.getFastaIndex(java.io.File fastaFile)
Returns the file index of a FASTA file. |
FastaIndex |
SequenceFactory.getFastaIndex(java.io.File fastaFile,
javax.swing.JProgressBar progressBar)
Returns the file index of a FASTA file. |
FastaIndex |
SequenceFactory.getIndex(java.io.File fastaIndex)
Deserializes the index of the FASTA file. |
Methods in com.compomics.util.experiment.identification with parameters of type FastaIndex | |
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void |
SequenceFactory.writeIndex(FastaIndex fastaIndex,
java.io.File directory)
Serializes the FASTA file index in a given directory. |
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