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java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.quantification.reporterion.QuantificationMatch
com.compomics.util.experiment.quantification.reporterion.quantification.PeptideQuantification
public class PeptideQuantification
This class models quantification at the peptide level.
Field Summary |
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Fields inherited from class com.compomics.util.experiment.quantification.reporterion.QuantificationMatch |
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ratios |
Constructor Summary | |
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PeptideQuantification(java.lang.String peptideKey)
Constructor for the peptide quantification |
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PeptideQuantification(java.lang.String peptideKey,
java.util.ArrayList<java.lang.String> psmQuantification)
Constructor for the peptide quantification |
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PeptideQuantification(java.lang.String peptideKey,
java.util.ArrayList<java.lang.String> psmQuantification,
java.util.HashMap<java.lang.Integer,Ratio> ratios)
Constructor for the peptide quantification |
Method Summary | |
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void |
addPsmQuantification(java.lang.String newPsmQuantification)
Adds a new psm quantification in the psm quantification map |
java.lang.String |
getKey()
returns the key of a match |
java.util.ArrayList<java.lang.String> |
getPsmQuantification()
Getter for the corresponding spectrum quantification |
Methods inherited from class com.compomics.util.experiment.quantification.reporterion.QuantificationMatch |
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addRatio, getRatios, setRatios |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
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addUrParam, getParameterKey, getUrParam |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public PeptideQuantification(java.lang.String peptideKey)
peptideKey
- the key of the identification peptide matchpublic PeptideQuantification(java.lang.String peptideKey, java.util.ArrayList<java.lang.String> psmQuantification)
peptideKey
- the key of the identification peptide matchpsmQuantification
- the corresponding spectrum quantificationpublic PeptideQuantification(java.lang.String peptideKey, java.util.ArrayList<java.lang.String> psmQuantification, java.util.HashMap<java.lang.Integer,Ratio> ratios)
peptideKey
- the identification peptide matchpsmQuantification
- the corresponding spectrum quantificationratios
- the estimated ratiosMethod Detail |
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public java.util.ArrayList<java.lang.String> getPsmQuantification()
public void addPsmQuantification(java.lang.String newPsmQuantification)
newPsmQuantification
- the new psm quantificationpublic java.lang.String getKey()
QuantificationMatch
getKey
in class QuantificationMatch
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