com.compomics.util.experiment.identification
Class AAStats
java.lang.Object
com.compomics.util.experiment.identification.AAStats
- All Implemented Interfaces:
- java.io.Serializable
public class AAStats
- extends java.lang.Object
- implements java.io.Serializable
This class contains basic statistics of the amino acid composition of a
database. It is its own factory based on the sequenceFactory.
- Author:
- marc
- See Also:
- Serialized Form
Constructor Summary |
AAStats(javax.swing.JProgressBar progressBar)
|
Method Summary |
boolean |
containsAA(java.lang.String aa)
|
int |
getnAA(java.lang.String aa)
|
int |
getnAAAfter(java.lang.String aaRef,
java.lang.String aaAfter)
|
int |
getnAABefore(java.lang.String aaRef,
java.lang.String aaBefore)
|
double |
getpAA(java.lang.String aa)
|
double |
getpAAAfter(java.lang.String aaRef,
java.lang.String aaAfter)
|
double |
getpAABefore(java.lang.String aaRef,
java.lang.String aaBefore)
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
AAStats
public AAStats(javax.swing.JProgressBar progressBar)
throws java.io.IOException
- Throws:
java.io.IOException
getnAA
public int getnAA(java.lang.String aa)
getnAAAfter
public int getnAAAfter(java.lang.String aaRef,
java.lang.String aaAfter)
containsAA
public boolean containsAA(java.lang.String aa)
getnAABefore
public int getnAABefore(java.lang.String aaRef,
java.lang.String aaBefore)
getpAA
public double getpAA(java.lang.String aa)
getpAAAfter
public double getpAAAfter(java.lang.String aaRef,
java.lang.String aaAfter)
getpAABefore
public double getpAABefore(java.lang.String aaRef,
java.lang.String aaBefore)
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