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See:
Description
Class Summary | |
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CommandLineParser | This class provides a generic interface for the parsing of command-line arguments, options and flags. |
DefaultOutputLoggerImplementation | This class implements a default logger (for debugging purposes). |
FileLoggerImplementation | This class implements the Logger interface for logging to a file. |
IsotopicDistribution | This class calculates the isotopic distribution based on a molecular formula. |
IsotopicDistributionSpectrum | This class is an implementation of the SpectrumFile specific for the isotopic distribution Created by IntelliJ IDEA. |
IsotopicElement | This class represents the isotopically different element with the occurrence and the dalton difference between this and the natural variant. |
MassCalc | This class takes care of mass calculation, based on a sequence in IUPAC format. |
Translate | This class allows the user to translate a DNA sequence into 6 reading frames. |
Exception Summary | |
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UnknownElementMassException | This class implements an Exception, thrown when a MassCalc instance is confronted with an element symbol it cannot retrieve in its element lists. |
The classes in this package focus mainly on very general, top-level tasks that are used throughout the other packages in the util section.
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