Package | Description |
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com.compomics.util.experiment.identification.psm_scoring |
Main PSM scoring class.
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Modifier and Type | Method and Description |
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static PsmScores |
PsmScores.getScore(int scoreIndex)
Returns the PSM score of the given index.
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static PsmScores |
PsmScores.valueOf(String name)
Returns the enum constant of this type with the specified name.
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static PsmScores[] |
PsmScores.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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Modifier and Type | Method and Description |
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static double |
PsmScores.getScore(Peptide peptide,
MSnSpectrum spectrum,
HashMap<Ion.IonType,HashSet<Integer>> iontypes,
NeutralLossesMap neutralLosses,
ArrayList<Integer> charges,
int identificationCharge,
ShotgunProtocol shotgunProtocol,
PsmScores psmScore)
Scores the match between the given peptide and spectrum using an m/z
fidelity score.
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