public class IdMatchValidationPreferences extends Object implements Serializable
Constructor and Description |
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IdMatchValidationPreferences() |
Modifier and Type | Method and Description |
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double |
getDefaultPeptideFDR()
Returns the default peptide FDR.
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double |
getDefaultProteinFDR()
Returns the default protein FDR.
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double |
getDefaultPsmFDR()
Returns the default PSM FDR.
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Boolean |
getGroupSmallSubgroups()
Indicates whether small subgroups of matches should be grouped together.
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ValidationQCPreferences |
getValidationQCPreferences()
Returns the validation QC preferences.
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void |
setDefaultPeptideFDR(double defaultPeptideFDR)
Sets the default peptide FDR.
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void |
setDefaultProteinFDR(double defaultProteinFDR)
Sets the default protein FDR.
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void |
setDefaultPsmFDR(double defaultPsmFDR)
Sets the default PSM FDR.
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void |
setGroupSmallSubgroups(Boolean groupSmallSubgroups)
Sets whether small subgroups of matches should be grouped together.
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void |
setValidationQCPreferences(ValidationQCPreferences validationQCPreferences)
Sets the validation QC preferences.
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public double getDefaultProteinFDR()
public void setDefaultProteinFDR(double defaultProteinFDR)
defaultProteinFDR
- the default protein FDRpublic double getDefaultPeptideFDR()
public void setDefaultPeptideFDR(double defaultPeptideFDR)
defaultPeptideFDR
- the default peptide FDRpublic double getDefaultPsmFDR()
public void setDefaultPsmFDR(double defaultPsmFDR)
defaultPsmFDR
- the default PSM FDRpublic ValidationQCPreferences getValidationQCPreferences()
public void setValidationQCPreferences(ValidationQCPreferences validationQCPreferences)
validationQCPreferences
- the validation QC preferencespublic Boolean getGroupSmallSubgroups()
public void setGroupSmallSubgroups(Boolean groupSmallSubgroups)
groupSmallSubgroups
- a boolean indicating whether small subgroups
of matches should be grouped togetherCopyright © 2015. All rights reserved.