Package com.compomics.util.experiment.identification

This package contains experiment classes related to identifications.

See:
          Description

Interface Summary
Advocate The advocate of a hit can be a search engine, a rescoring algorithm, etc.
 

Class Summary
AdvocateFactory This factory will provide adapted advocates when requested.
DerbyTest Deby database tests.
FastaIndex This class contains the index of a FASTA file.
Identification This class contains identification results.
IdentificationDB This class uses a database to manage identification matches
IdentificationMatch This is an abstract class for an identification match.
IdentificationMethod This class will contain all methods used to obtain identifications.
NeutralLossesMap This class contains the informations relative to the accounting of neutral losses
PeptideAssumption This object will models the assumption made by an advocate.
SequenceFactory Factory retrieving the information of the loaded FASTA file.
SpectrumAnnotator The spectrum annotator annotates peaks in a spectrum.
 

Enum Summary
IdentificationMatch.MatchType The type of match.
 

Package com.compomics.util.experiment.identification Description

This package contains experiment classes related to identifications.



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