addMatchParameter, addPeptideMatchParameter, addProteinMatchParameter, addSpectrumMatch, addSpectrumMatch, addSpectrumMatchParameter, buildPeptidesAndProteins, buildPeptidesAndProteins, close, convert, emptyCache, establishConnection, getCacheSize, getFileName, getMatchParameter, getMatchType, getMethodUsed, getPeptideIdentification, getPeptideMatch, getPeptideMatchParameter, getProteinIdentification, getProteinMap, getProteinMatch, getProteinMatchPArameter, getSerializationDirectory, getSpectrumIdentification, getSpectrumMatch, getSpectrumMatchParameter, isAutomatedMemoryManagement, isDB, isInMemory, matchExists, memoryCheck, reduceMemoryConsumtion, removeMatch, removePeptideMatch, removeProteinMatch, removeSpectrumMatch, setAutomatedMemoryManagement, setCacheSize, setDirectory, setInMemory, setIsDB, setMatchChanged, updateCache, updatePeptideMatchParameter, updateProteinMatchParameter, updateSpectrumMatchParameter |