Uses of Class
com.compomics.util.experiment.massspectrometry.Charge

Packages that use Charge
com.compomics.util.experiment.identification This package contains experiment classes related to identifications. 
com.compomics.util.experiment.identification.matches This package contains experiment classes releated to matches. e.g., pepties, proteins, modifications and spectra. 
com.compomics.util.experiment.massspectrometry This package contains experiment classes related to spectra. 
 

Uses of Charge in com.compomics.util.experiment.identification
 

Methods in com.compomics.util.experiment.identification that return Charge
 Charge PeptideAssumption.getIdentificationCharge()
          Returns the charge used for identification.
 

Constructors in com.compomics.util.experiment.identification with parameters of type Charge
PeptideAssumption(Peptide aPeptide, int rank, int advocate, Charge identificationCharge, double eValue, String identificationFile)
          Constructor for a peptide assumption.
 

Uses of Charge in com.compomics.util.experiment.identification.matches
 

Fields in com.compomics.util.experiment.identification.matches declared as Charge
 Charge IonMatch.charge
          The supposed charge of the ion.
 

Methods in com.compomics.util.experiment.identification.matches with parameters of type Charge
static String IonMatch.getPeakAnnotation(boolean html, Ion ion, Charge charge)
          Returns the annotation to use for a given ion and charge as a String.
static String IonMatch.getPeakAnnotation(Ion ion, Charge charge)
          Returns the annotation to use for a given ion and charge as a String.
 

Constructors in com.compomics.util.experiment.identification.matches with parameters of type Charge
IonMatch(Peak aPeak, Ion anIon, Charge aCharge)
          Constructor for an ion peak.
 

Uses of Charge in com.compomics.util.experiment.massspectrometry
 

Methods in com.compomics.util.experiment.massspectrometry that return types with arguments of type Charge
 ArrayList<Charge> Precursor.getPossibleCharges()
          Getter for the possible charges.
 

Constructor parameters in com.compomics.util.experiment.massspectrometry with type arguments of type Charge
Precursor(double rt, double mz, ArrayList<Charge> possibleCharges)
          Constructor for the precursor.
Precursor(double mz, double intensity, ArrayList<Charge> possibleCharges, double rtMin, double rtMax)
          Cronstructor with rt window and no reference rt.
Precursor(double rt, double mz, double intensity, ArrayList<Charge> possibleCharges)
          Constructor for the precursor.
Precursor(double rt, double mz, double intensity, ArrayList<Charge> possibleCharges, double rtMin, double rtMax)
          Cronstructor with rt window.
 



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