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java.lang.Objectcom.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.quantification.Quantification
com.compomics.util.experiment.quantification.reporterion.ReporterIonQuantification
public class ReporterIonQuantification
This class will contain quantification results. User: Marc Date: Sep 1, 2010 Time: 1:42:21 PM
Nested Class Summary |
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Nested classes/interfaces inherited from class com.compomics.util.experiment.quantification.Quantification |
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Quantification.QuantificationMethod |
Field Summary |
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Fields inherited from class com.compomics.util.experiment.quantification.Quantification |
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automatedMemoryManagement, cacheSize, inMemory, loadedMatches, loadedMatchesMap, longKeys, methodUsed, modifiedMatches, peptideQuantification, proteinQuantification, psmIDentificationToQuantification, serializationDirectory, urParameters |
Constructor Summary | |
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ReporterIonQuantification(Quantification.QuantificationMethod methodUsed)
Constructor for the reporter ion quantification |
Method Summary | |
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void |
assignSample(int reporterIndex,
Sample sample)
assign a sample to an ion referenced by its static index |
int |
getReferenceLabel()
Returns the reference label indexed by the corresponding reporter ion |
Integer |
getReporterIndex(Sample aSample)
This method returns the ion associated to the given sample |
ReporterMethod |
getReporterMethod()
returns the reporter method used |
Sample |
getSample(int reporterIndex)
This method returns the sample associated to the given ion |
void |
setMethod(ReporterMethod reporterMethod)
Sets the reporter method used |
void |
setReferenceLabel(int referenceLabel)
Sets the reference label indexed by the corresponding reporter ion index |
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject |
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addUrParam, getParameterKey, getUrParam |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public ReporterIonQuantification(Quantification.QuantificationMethod methodUsed)
methodUsed
- the method used for this quantificationMethod Detail |
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public void assignSample(int reporterIndex, Sample sample)
reporterIndex
- the index of the ionsample
- the samplepublic Sample getSample(int reporterIndex)
reporterIndex
- the static index of the reporter ion
public Integer getReporterIndex(Sample aSample)
aSample
- the sample
public ReporterMethod getReporterMethod()
public void setMethod(ReporterMethod reporterMethod)
reporterMethod
- the reporter method usedpublic int getReferenceLabel()
public void setReferenceLabel(int referenceLabel)
referenceLabel
- the index of the reporter ion corresponding to the reference label
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