Uses of Class
com.compomics.util.experiment.biology.ions.ReporterIon

Packages that use ReporterIon
com.compomics.util.experiment.biology This package contains experiement classes related to biological entities. 
com.compomics.util.experiment.biology.ions This package contains experiment classes related to ions. 
com.compomics.util.experiment.quantification.reporterion This package contains experiment classes related to reporter ions. 
 

Uses of ReporterIon in com.compomics.util.experiment.biology
 

Methods in com.compomics.util.experiment.biology that return types with arguments of type ReporterIon
 ArrayList<ReporterIon> PTM.getReporterIons()
          Returns the reporter ions possibly encountered with this modification
 

Methods in com.compomics.util.experiment.biology with parameters of type ReporterIon
 void PTM.addReporterIon(ReporterIon reporterIon)
          Adds a reporter ion
 

Method parameters in com.compomics.util.experiment.biology with type arguments of type ReporterIon
 void PTM.setReporterIons(ArrayList<ReporterIon> reporterIons)
          Sets the reporter ions possibly encountered with this modification
 

Uses of ReporterIon in com.compomics.util.experiment.biology.ions
 

Fields in com.compomics.util.experiment.biology.ions declared as ReporterIon
static ReporterIon ReporterIon.iTRAQ113
          Standard reporter ion iTRAQ 113.
static ReporterIon ReporterIon.iTRAQ114
          Standard reporter ion iTRAQ 114.
static ReporterIon ReporterIon.iTRAQ115
          Standard reporter ion iTRAQ 115.
static ReporterIon ReporterIon.iTRAQ116
          Standard reporter ion iTRAQ 116.
static ReporterIon ReporterIon.iTRAQ117
          Standard reporter ion iTRAQ 117.
static ReporterIon ReporterIon.iTRAQ118
          Standard reporter ion iTRAQ 118.
static ReporterIon ReporterIon.iTRAQ119
          Standard reporter ion iTRAQ 119.
static ReporterIon ReporterIon.iTRAQ121
          Standard reporter ion iTRAQ 121.
static ReporterIon ReporterIon.TMT0
          Standard reporter ion TMT0.
static ReporterIon ReporterIon.TMT1
          Standard reporter ion TMT1.
static ReporterIon ReporterIon.TMT2
          Standard reporter ion TMT2.
static ReporterIon ReporterIon.TMT3
          Standard reporter ion TMT3.
static ReporterIon ReporterIon.TMT4
          Standard reporter ion TMT4.
static ReporterIon ReporterIon.TMT5
          Standard reporter ion TMT5.
 

Methods in com.compomics.util.experiment.biology.ions with parameters of type ReporterIon
 boolean ReporterIon.isSameAs(ReporterIon anotherReporterIon)
          Compares the current reporter ion with another one based on their masses.
 

Uses of ReporterIon in com.compomics.util.experiment.quantification.reporterion
 

Methods in com.compomics.util.experiment.quantification.reporterion that return types with arguments of type ReporterIon
 ArrayList<ReporterIon> ReporterMethod.getReporterIons()
          Returns the reporter ions used.
 

Constructor parameters in com.compomics.util.experiment.quantification.reporterion with type arguments of type ReporterIon
ReporterMethod(String name, ArrayList<ReporterIon> reporterIons, ArrayList<CorrectionFactor> correctionFactors)
          Constructor for a reporter method.
 



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