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Packages that use PeptideAssumption | |
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com.compomics.util.experiment.identification.matches | This package contains experiment classes releated to matches. e.g., pepties, proteins, modifications and spectra. |
Uses of PeptideAssumption in com.compomics.util.experiment.identification.matches |
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Methods in com.compomics.util.experiment.identification.matches that return PeptideAssumption | |
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PeptideAssumption |
SpectrumMatch.getBestAssumption()
Getter for the best assumption. |
PeptideAssumption |
SpectrumMatch.getFirstHit(int advocateId)
Returns the first hit obtained using the specified advocate. |
Methods in com.compomics.util.experiment.identification.matches that return types with arguments of type PeptideAssumption | |
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ArrayList<PeptideAssumption> |
SpectrumMatch.getAllAssumptions()
Return all assumptions for all search engines as a list. |
HashMap<Double,ArrayList<PeptideAssumption>> |
SpectrumMatch.getAllAssumptions(int advocateId)
Return all assumptions for the specified search engine indexed by their e-value. |
Methods in com.compomics.util.experiment.identification.matches with parameters of type PeptideAssumption | |
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void |
SpectrumMatch.addHit(int otherAdvocateId,
PeptideAssumption otherAssumption)
Add a first hit. |
void |
SpectrumMatch.setBestAssumption(PeptideAssumption bestAssumption)
Setter for the best assumption. |
void |
SpectrumMatch.setFirstHit(int advocateId,
PeptideAssumption peptideAssumption)
Sets the best peptideAssumption according to the search engine. |
Constructors in com.compomics.util.experiment.identification.matches with parameters of type PeptideAssumption | |
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SpectrumMatch(String spectrumKey,
PeptideAssumption assumption)
Constructor for the spectrum match. |
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