Package | Description |
---|---|
com.compomics.util.experiment.biology |
Experiment classes related to biological entities.
|
com.compomics.util.experiment.identification.psm_scoring |
Main PSM scoring class.
|
com.compomics.util.experiment.identification.psm_scoring.psm_scores |
Main PTM scoring classes.
|
com.compomics.util.experiment.identification.ptm |
Additional PSM scoring classes.
|
com.compomics.util.experiment.identification.ptm.ptmscores |
PTM scores.
|
com.compomics.util.experiment.identification.spectrum_annotation |
Classes used for ms2 spectrum annotation.
|
com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators |
Spectrum annotation.
|
com.compomics.util.gui.spectrum |
Spectrum and Chromatogram visualization GUI classes.
|
com.compomics.util.preferences |
Utilities preferences classes.
|
Class and Description |
---|
SpecificAnnotationSettings
The spectrum annotation preferences specific to a spectrum and an
identification assumption.
|
Class and Description |
---|
SpecificAnnotationSettings
The spectrum annotation preferences specific to a spectrum and an
identification assumption.
|
Class and Description |
---|
AnnotationSettings
This class contains the spectrum annotation preferences.
|
SpecificAnnotationSettings
The spectrum annotation preferences specific to a spectrum and an
identification assumption.
|
Class and Description |
---|
AnnotationSettings
This class contains the spectrum annotation preferences.
|
SpecificAnnotationSettings
The spectrum annotation preferences specific to a spectrum and an
identification assumption.
|
Class and Description |
---|
AnnotationSettings
This class contains the spectrum annotation preferences.
|
SpecificAnnotationSettings
The spectrum annotation preferences specific to a spectrum and an
identification assumption.
|
Class and Description |
---|
AnnotationSettings
This class contains the spectrum annotation preferences.
|
NeutralLossesMap
This class contains the informations relative to the accounting of neutral
losses
|
SpecificAnnotationSettings
The spectrum annotation preferences specific to a spectrum and an
identification assumption.
|
Class and Description |
---|
AnnotationSettings
This class contains the spectrum annotation preferences.
|
NeutralLossesMap
This class contains the informations relative to the accounting of neutral
losses
|
SpecificAnnotationSettings
The spectrum annotation preferences specific to a spectrum and an
identification assumption.
|
SpectrumAnnotator
The spectrum annotator annotates peaks in a spectrum.
|
Class and Description |
---|
NeutralLossesMap
This class contains the informations relative to the accounting of neutral
losses
|
Class and Description |
---|
AnnotationSettings
This class contains the spectrum annotation preferences.
|
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