public class IdentificationKeys extends ExperimentObject
Modifier and Type | Field and Description |
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ArrayList<String> |
fractions
The spectrum files that were used for the psms.
|
static long |
key
Key to use in the database.
|
HashSet<Long> |
peptideIdentification
List of the keys of all imported peptides.
|
HashSet<Long> |
proteinIdentification
List of the keys of all imported proteins.
|
HashMap<String,HashSet<Long>> |
proteinMap
A map linking protein accessions to all their protein matches keys.
|
HashMap<String,HashSet<Long>> |
spectrumIdentification
Map mapping spectra per file.
|
NO_KEY
Constructor and Description |
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IdentificationKeys() |
addUrParam, asLong, clearParametersMap, getUrParam, getUrParams, removeUrParam, setUrParams
getFirstLevel, getId, readDBMode, setFirstLevel, setId, writeDBMode
jdoZooEvict, jdoZooGetBackup, jdoZooGetClassDef, jdoZooGetContext, jdoZooGetNode, jdoZooGetOid, jdoZooGetTimestamp, jdoZooHasState, jdoZooInit, jdoZooIsDeleted, jdoZooIsDetached, jdoZooIsDirty, jdoZooIsNew, jdoZooIsPersistent, jdoZooIsStateHollow, jdoZooIsTransactional, jdoZooMarkClean, jdoZooMarkDeleted, jdoZooMarkDetached, jdoZooMarkDirty, jdoZooMarkHollow, jdoZooMarkTransient, jdoZooSetOid, jdoZooSetTimestamp, toString, zooActivateRead, zooActivateWrite, zooActivateWrite
public static final long key
public final HashSet<Long> proteinIdentification
public final HashSet<Long> peptideIdentification
public HashMap<String,HashSet<Long>> spectrumIdentification
public final HashMap<String,HashSet<Long>> proteinMap
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