Package | Description |
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com.compomics.util.experiment.identification.protein_sequences.digestion |
This package contains classes used to digest protein sequences into peptides.
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com.compomics.util.experiment.identification.protein_sequences.digestion.iterators |
This package contains implementations of the SequenceIterator interface.
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Modifier and Type | Method and Description |
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SequenceIterator |
IteratorFactory.getSequenceIterator(String sequence,
DigestionPreferences digestionPreferences,
double massMin,
double massMax)
Returns a sequence iterator for the given protein sequence and digestion
preferences.
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Modifier and Type | Class and Description |
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class |
NoDigestionCombinationIterator
Iterator for no digestion of a sequence containing amino acid combinations.
|
class |
NoDigestionIterator
Iterator for no digestion.
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class |
SpecificSingleEnzymeCombinationIterator
Iterator for enzymatic digestion.
|
class |
SpecificSingleEnzymeIterator
Iterator for enzymatic digestion.
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class |
UnspecificCombinationIterator
Iterator for unspecific cleavage.
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class |
UnspecificIterator
Iterator for unspecific cleavage.
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