Package | Description |
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com.compomics.util.experiment.biology |
Experiment classes related to biological entities.
|
com.compomics.util.experiment.biology.variants.amino_acids |
Type of implemented variants.
|
com.compomics.util.experiment.identification.matches |
Experiment classes related to matches.
|
Modifier and Type | Method and Description |
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HashMap<String,HashMap<Integer,ArrayList<Variant>>> |
Peptide.getVariantsMap()
Returns the variants in a map indexed by protein accession and index.
|
Modifier and Type | Class and Description |
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class |
Deletion
Class representing an amino acid deletion.
|
class |
Insertion
Class representing an amino acid insertion.
|
class |
Substitution
Class representing an amino acid substitution.
|
class |
Swap
Class representing an amino acid swap.
|
Modifier and Type | Method and Description |
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Variant |
VariantMatch.getVariant()
Returns the variant.
|
Constructor and Description |
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VariantMatch(Variant variant,
String proteinAccession,
int site)
Constructor.
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