Package | Description |
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com.compomics.util.experiment.identification |
Experiment classes related to identifications.
|
com.compomics.util.experiment.quantification.spectrumcounting |
Experiment classes related to spectrum counting.
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com.compomics.util.parameters.quantification.spectrum_counting |
Modifier and Type | Method and Description |
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double |
IdentificationFeaturesGenerator.getNormalizedSpectrumCounting(long proteinMatchKey,
Metrics metrics,
UnitOfMeasurement unit,
Double referenceMass,
SpectrumCountingMethod method)
Returns the spectrum counting metric of the protein match of interest
using the preference settings normalized to the injected protein amount.
|
double |
IdentificationFeaturesGenerator.getNormalizedSpectrumCounting(long proteinMatchKey,
UnitOfMeasurement unit,
SpectrumCountingMethod method)
Returns the spectrum counting metric of the protein match of interest
using the preference settings normalized to the injected protein amount.
|
Double |
IdentificationFeaturesGenerator.getSpectrumCounting(long proteinMatchKey,
SpectrumCountingMethod method)
Returns the spectrum counting metric of the protein match of interest for
the given method.
|
Modifier and Type | Method and Description |
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static SpectrumCountingMethod |
SpectrumCountingMethod.valueOf(String name)
Returns the enum constant of this type with the specified name.
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static SpectrumCountingMethod[] |
SpectrumCountingMethod.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Modifier and Type | Method and Description |
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SpectrumCountingMethod |
SpectrumCountingParameters.getSelectedMethod()
Returns the current spectrum counting method.
|
Modifier and Type | Method and Description |
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void |
SpectrumCountingParameters.setSelectedMethod(SpectrumCountingMethod selectedMethod)
Set the current spectrum counting method.
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