public class PeptideAndProteinBuilder extends Object
Constructor and Description |
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PeptideAndProteinBuilder(Identification identification)
Constructor.
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Modifier and Type | Method and Description |
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void |
buildPeptidesAndProteins(SpectrumMatch spectrumMatch,
SequenceMatchingParameters sequenceMatchingPreferences,
SequenceProvider sequenceProvider,
boolean protein)
Creates the peptides and protein instances based on the given spectrum
match.
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public PeptideAndProteinBuilder(Identification identification)
identification
- the identification objectpublic void buildPeptidesAndProteins(SpectrumMatch spectrumMatch, SequenceMatchingParameters sequenceMatchingPreferences, SequenceProvider sequenceProvider, boolean protein)
spectrumMatch
- the spectrum match to addsequenceMatchingPreferences
- the sequence matching preferencessequenceProvider
- a provider of protein sequencesprotein
- boolean indicating whether proteins should be builtCopyright © 2018. All rights reserved.