Package | Description |
---|---|
com.compomics.util.gui.parameters.identification.advanced |
Dialogs for advanced identification parameters.
|
com.compomics.util.parameters.identification |
Identification parameters.
|
com.compomics.util.parameters.identification.advanced |
Advanced Identification parameters.
|
Modifier and Type | Method and Description |
---|---|
PsmScoringParameters |
PsmScoringParametersDialog.getPsmScoringPreferences()
Returns the PSM scoring preferences as set by the user.
|
Constructor and Description |
---|
PsmScoringParametersDialog(Dialog owner,
Frame parentFrame,
PsmScoringParameters psmScoringPreferences,
boolean editable)
Creates a new PsmScoringSettingsDialog with a dialog as owner.
|
PsmScoringParametersDialog(Frame parentFrame,
PsmScoringParameters psmScoringPreferences,
boolean editable)
Creates a new PsmScoringSettingsDialog with a frame as owner.
|
Modifier and Type | Method and Description |
---|---|
PsmScoringParameters |
IdentificationParameters.getPsmScoringParameters()
Returns the scoring parameters used when scoring PSMs.
|
Modifier and Type | Method and Description |
---|---|
void |
IdentificationParameters.setPsmScoringParameters(PsmScoringParameters psmScoringParameters)
Sets the scoring preferences used when scoring PSMs.
|
Constructor and Description |
---|
IdentificationParameters(String name,
String description,
SearchParameters searchParameters,
AnnotationParameters annotationParameters,
SequenceMatchingParameters sequenceMatchingParameters,
PeptideVariantsParameters peptideVariantsParameters,
GeneParameters geneParameters,
PsmScoringParameters psmScoringParameters,
PeptideAssumptionFilter peptideAssumptionFilter,
ModificationLocalizationParameters ModificationLocalizationParameters,
ProteinInferenceParameters proteinInferenceParameters,
IdMatchValidationParameters idValidationParameters,
FractionParameters fractionParameters)
Constructor.
|
Modifier and Type | Method and Description |
---|---|
boolean |
PsmScoringParameters.equals(PsmScoringParameters otherPsmScoringPreferences)
Returns true if the objects have identical settings.
|
Copyright © 2018. All rights reserved.