Package | Description |
---|---|
com.compomics.util.experiment.identification.protein_sequences |
Protein sequence handling related classes.
|
com.compomics.util.experiment.identification.psm_scoring.psm_scores |
Main PTM scoring classes.
|
com.compomics.util.protein_sequences_manager |
Classes used for the management of FASTA files.
|
Class and Description |
---|
FastaIndex
This class contains the index of a FASTA file.
|
SequenceFactory
Factory retrieving the information of the loaded FASTA file.
|
SequenceFactory.HeaderIterator
Convenience iterator iterating the headers of a FASTA file without using
the cache.
|
SequenceFactory.ProteinIterator
Convenience iterator iterating all proteins in a FASTA file without using
index or cache.
|
Class and Description |
---|
AaOccurrence
This class gathers statistics on the occurrence of amino acids in a fasta
file.
|
Class and Description |
---|
FastaIndex
This class contains the index of a FASTA file.
|
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