public class ImmoniumIonAnnotator extends Object
Constructor and Description |
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ImmoniumIonAnnotator(char[] peptideSequence)
Constructor.
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ImmoniumIonAnnotator(char[] peptideSequence,
boolean immonium,
boolean related)
Constructor.
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Modifier and Type | Method and Description |
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ArrayList<IonMatch> |
getIonMatches(SpectrumIndex spectrumIndex)
Returns the ions matched in the given spectrum.
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public ImmoniumIonAnnotator(char[] peptideSequence)
peptideSequence
- the peptide sequencepublic ImmoniumIonAnnotator(char[] peptideSequence, boolean immonium, boolean related)
peptideSequence
- the peptide sequenceimmonium
- boolean indicating whether immonium ions should be
annotatedrelated
- boolean indicating whether related ions should be
annotatedpublic ArrayList<IonMatch> getIonMatches(SpectrumIndex spectrumIndex)
spectrumIndex
- the index of the spectrumCopyright © 2019. All rights reserved.