Package | Description |
---|---|
com.compomics.util.experiment.biology |
Experiment classes related to biological entities.
|
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration |
This package contains the classes needed to configure the ms2pip features.
|
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features |
This package contains features implemented for ms2pip.
|
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic |
This package contains generic features implemented for ms2pip.
|
Modifier and Type | Method and Description |
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AminoAcid.Property |
AminoAcid.Property.getProperty(int index)
Returns the property at index.
|
static AminoAcid.Property |
AminoAcid.Property.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static AminoAcid.Property[] |
AminoAcid.Property.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Modifier and Type | Method and Description |
---|---|
double |
AminoAcid.getProperty(AminoAcid.Property property)
Returns a property of the amino acid.
|
Modifier and Type | Method and Description |
---|---|
AminoAcid.Property[] |
MultipleAAPropertyFeature.getAminoAcidProperties()
Returns the amino acid properties to consider.
|
AminoAcid.Property |
SingleAAPropertyFeature.getAminoAcidProperty()
Returns the amino acid property to consider.
|
Modifier and Type | Method and Description |
---|---|
void |
SingleAAPropertyFeature.setAminoAcidProperty(AminoAcid.Property aminoAcidProperty)
Sets the amino acid property to consider.
|
Modifier and Type | Method and Description |
---|---|
AminoAcid.Property[] |
AAPropertyRelationshipFeature.getAminoAcidProperties() |
Constructor and Description |
---|
AAPropertyFeatureAbsolute(int aaIndex,
AminoAcid.Property property)
Constructor.
|
AAPropertyFeatureRelative(int aaIndex,
AminoAcid.Property property)
Constructor.
|
ComplementaryIonAminoAcidFeature(AminoAcid.Property aminoAcidProperty,
AASequenceFeature.Function function)
Constructor.
|
ForwardIonAminoAcidFeature(AminoAcid.Property aminoAcidProperty,
AASequenceFeature.Function function)
Constructor.
|
PeptideAminoAcidFeature(AminoAcid.Property aminoAcidProperty,
AASequenceFeature.Function function)
Constructor.
|
Modifier and Type | Field and Description |
---|---|
protected AminoAcid.Property |
AASequenceFeature.aminoAcidProperty
The property of the amino acids to consider.
|
protected AminoAcid.Property |
AAPropertyFeature.aminoAcidProperty
The property of the amino acids to consider.
|
Modifier and Type | Method and Description |
---|---|
AminoAcid.Property |
AASequenceFeature.getAminoAcidProperty() |
AminoAcid.Property |
AAPropertyFeature.getAminoAcidProperty() |
Modifier and Type | Method and Description |
---|---|
void |
AASequenceFeature.setAminoAcidProperty(AminoAcid.Property aminoAcidProperty) |
void |
AAPropertyFeature.setAminoAcidProperty(AminoAcid.Property aminoAcidProperty) |
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