Package | Description |
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com.compomics.util.experiment.identification.spectrum_annotation.simple_annotators |
This package contains implementations of the SimpleAnnotator allowing the annotation of specific sets of ions.
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com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators |
This package contains implementations of the SpectrumAnnotator allowing the annotation of all ions.
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Constructor and Description |
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FragmentAnnotator(Peptide peptide,
SimplePeptideAnnotator.IonSeries ionSeries)
Constructor.
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FragmentAnnotator(Peptide peptide,
SimplePeptideAnnotator.IonSeries ionSeries,
boolean forward,
boolean complementary)
Constructor.
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FragmentAnnotatorNL(Peptide peptide,
SimplePeptideAnnotator.IonSeries ionSeries,
boolean sequenceDependent)
Constructor.
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FragmentAnnotatorNL(Peptide peptide,
SimplePeptideAnnotator.IonSeries ionSeries,
boolean sequenceDependent,
boolean forward,
boolean complementary)
Constructor.
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Modifier and Type | Method and Description |
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static SimplePeptideAnnotator.IonSeries |
SimplePeptideAnnotator.IonSeries.valueOf(String name)
Returns the enum constant of this type with the specified name.
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static SimplePeptideAnnotator.IonSeries[] |
SimplePeptideAnnotator.IonSeries.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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