Package | Description |
---|---|
com.compomics.util.experiment.identification.protein_sequences.digestion |
This package contains classes used to digest protein sequences into peptides.
|
com.compomics.util.experiment.identification.protein_sequences.digestion.iterators |
This package contains implementations of the SequenceIterator interface.
|
Modifier and Type | Method and Description |
---|---|
ExtendedPeptide |
SequenceIterator.getNextPeptide()
Returns the next peptide that can be generated from the iterator.
|
ExtendedPeptide |
PeptideDraft.getPeptide(double massMin,
double massMax)
Returns a peptide from the peptide draft.
|
ExtendedPeptide |
PeptideDraft.getPeptide(double massMin,
double massMax,
BoxedObject<Boolean> smallMass)
Returns a peptide from the peptide draft.
|
ExtendedPeptide |
ProteinIteratorUtils.getPeptideFromProtein(char[] proteinSequence,
int indexOnProtein,
double massMin,
double massMax)
Returns a peptide from the given sequence.
|
ExtendedPeptide |
ProteinIteratorUtils.getPeptideFromProtein(char[] peptideSequence,
String proteinSequence,
int indexOnProtein,
Double massMin,
Double massMax)
Returns a peptide from the given sequence on the given protein.
|
ExtendedPeptide |
ProteinIteratorUtils.getPeptideFromProtein(char[] peptideSequence,
String proteinSequence,
int indexOnProtein,
double massMin,
double massMax,
BoxedObject<Boolean> smallMass)
Returns a peptide from the given sequence on the given protein.
|
Modifier and Type | Method and Description |
---|---|
ExtendedPeptide |
UnspecificIterator.getNextPeptide() |
ExtendedPeptide |
UnspecificCombinationIterator.getNextPeptide() |
ExtendedPeptide |
SpecificSingleEnzymeIterator.getNextPeptide() |
ExtendedPeptide |
SpecificSingleEnzymeCombinationIterator.getNextPeptide() |
ExtendedPeptide |
NoDigestionIterator.getNextPeptide() |
ExtendedPeptide |
NoDigestionCombinationIterator.getNextPeptide() |
Copyright © 2018. All rights reserved.