Package | Description |
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com.compomics.util.experiment.biology |
Experiment classes related to biological entities.
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com.compomics.util.experiment.identification.protein_inference |
Classes related to protein inference.
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Modifier and Type | Method and Description |
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ArrayList<VariantMatch> |
Peptide.getVariantMatches()
Getter for the variants carried by this peptide.
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Modifier and Type | Method and Description |
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void |
Peptide.addVariantMatch(VariantMatch variantMatch)
Adds a variant match.
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Modifier and Type | Method and Description |
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void |
Peptide.addVariantMatches(Collection<VariantMatch> variantMatch)
Adds variant matches.
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void |
Peptide.setVariantMatches(ArrayList<VariantMatch> variants)
Sets new variants for the peptide.
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Constructor and Description |
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Peptide(String aSequence,
ArrayList<ModificationMatch> modifications,
ArrayList<VariantMatch> variants,
boolean sanityCheck)
Constructor for the peptide.
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Modifier and Type | Method and Description |
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ArrayList<VariantMatch> |
PeptideProteinMapping.getVariantMatches()
Returns eventual variants found.
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Constructor and Description |
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PeptideProteinMapping(String proteinAccession,
String peptideSequence,
int index,
ArrayList<ModificationMatch> modificationMatches,
ArrayList<VariantMatch> variantMatches)
Constructor.
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