Package | Description |
---|---|
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration |
This package contains the classes needed to configure the ms2pip features.
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com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features |
This package contains features implemented for ms2pip.
|
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic |
This package contains generic features implemented for ms2pip.
|
Modifier and Type | Method and Description |
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Ms2pipFeature[] |
FeaturesMap.getFeatures(String category)
Returns the features in the map for the given category.
|
Modifier and Type | Method and Description |
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void |
FeaturesMap.addFeature(Ms2pipFeature ms2pipFeature)
Adds a feature to the map.
|
Modifier and Type | Class and Description |
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class |
AAIdentityFeatureAbsolute
An amino acid identity feature at a fixed position on the peptide sequence.
|
class |
AAIdentityFeatureRelative
An amino acid identity feature at a position relative to the end of an ion on the peptide sequence.
|
class |
AAPropertyFeatureAbsolute
An amino acid property feature at a fixed position on the peptide sequence.
|
class |
AAPropertyFeatureRelative
An amino acid property feature at a position relative to the end of an ion on the peptide sequence.
|
class |
AAPropertyRelationshipFeature
Feature based on the relationship between two amino acid features.
|
class |
ComplementaryIonAminoAcidFeature
Feature based on the amino acid properties of the complementary ion.
|
class |
ComplementaryIonFeature
Feature based on a property of the complementary ion.
|
class |
ForwardIonAminoAcidFeature
Feature based on the amino acid properties of the forward ion.
|
class |
ForwardIonFeature
Feature based on a property of the forward ion.
|
class |
ModificationFeature
Feature based on the modification status of an amino acid.
|
class |
PeptideAminoAcidFeature
Feature based on the amino acid properties of a peptide.
|
class |
PeptideFeature
Feature based on a peptide property.
|
Modifier and Type | Class and Description |
---|---|
class |
AAIdentityFeature
Feature based on an amino acid identity.
|
class |
AAPropertyFeature
Feature based on an amino acid property.
|
class |
AASequenceFeature
Feature based on the amino acid properties of a sequence.
|
class |
IonFeature
Feature based on a property of an ion.
|
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