public enum PsmScore extends Enum<PsmScore>
Enum Constant and Description |
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aa_intensity
The intensity sub-score as adapted from the DirecTag paper
(http://www.ncbi.nlm.nih.gov/pubmed/18630943) per amino acid.
|
aa_ms2_mz_fidelity
The m/z fidelity score as adapted from the DirecTag paper
(http://www.ncbi.nlm.nih.gov/pubmed/18630943) per amino acid.
|
complementarity
The complementarity score as adapted from the DirecTag paper
(http://www.ncbi.nlm.nih.gov/pubmed/18630943).
|
hyperScore
Hyperscore as variation of the score implemented in X!Tandem www.thegpm.org/tandem.
|
intensity
The intensity sub-score as adapted from the DirecTag paper
(http://www.ncbi.nlm.nih.gov/pubmed/18630943).
|
ms2_mz_fidelity
The m/z fidelity score as adapted from the DirecTag paper
(http://www.ncbi.nlm.nih.gov/pubmed/18630943).
|
native_score
The native score of the search engine.
|
precursor_accuracy
The precursor accuracy.
|
Modifier and Type | Field and Description |
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String |
description
Short description of the score.
|
boolean |
increasing
Indicates whether the score increases with the quality of the match.
|
Integer |
index
The index of the score of interest.
|
String |
name
The name of the score.
|
Modifier and Type | Method and Description |
---|---|
static PsmScore |
getScore(int scoreIndex)
Returns the PSM score of the given index.
|
static PsmScore |
getScore(String scoreName)
Returns the PSM score of the given name.
|
static PsmScore |
valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static PsmScore[] |
values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
public static final PsmScore native_score
public static final PsmScore precursor_accuracy
public static final PsmScore hyperScore
public static final PsmScore ms2_mz_fidelity
public static final PsmScore aa_ms2_mz_fidelity
public static final PsmScore intensity
public static final PsmScore aa_intensity
public static final PsmScore complementarity
public final Integer index
public final String name
public final boolean increasing
public final String description
public static PsmScore[] values()
for (PsmScore c : PsmScore.values()) System.out.println(c);
public static PsmScore valueOf(String name)
name
- the name of the enum constant to be returned.IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is nullpublic static PsmScore getScore(int scoreIndex)
scoreIndex
- the index of the desired scoreCopyright © 2018. All rights reserved.