Package | Description |
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com.compomics.util.experiment.identification.spectrum_annotation |
Classes used for ms2 spectrum annotation.
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com.compomics.util.experiment.massspectrometry |
Experiment classes related to spectra.
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com.compomics.util.gui.spectrum |
Spectrum and Chromatogram visualization GUI classes.
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Modifier and Type | Method and Description |
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AnnotationSettings.IntensityThresholdType |
AnnotationSettings.getIntensityThresholdType()
Returns the intensity threshold type.
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static AnnotationSettings.IntensityThresholdType |
AnnotationSettings.IntensityThresholdType.valueOf(String name)
Returns the enum constant of this type with the specified name.
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static AnnotationSettings.IntensityThresholdType[] |
AnnotationSettings.IntensityThresholdType.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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Modifier and Type | Method and Description |
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void |
AnnotationSettings.setIntensityThresholdType(AnnotationSettings.IntensityThresholdType intensityThresholdType)
Sets the intensity threshold type.
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Modifier and Type | Method and Description |
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double |
Spectrum.getIntensityLimit(AnnotationSettings.IntensityThresholdType intensityThresholdType,
double intensityFraction)
Returns the limit in intensity according to the given threshold.
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Constructor and Description |
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IntensityHistogram(ArrayList<IonMatch> annotations,
MSnSpectrum currentSpectrum,
AnnotationSettings.IntensityThresholdType intensityThresholdType,
double intensityThreshold)
Creates an IntensityHistogram plot
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