public class FragmentAnnotator extends Object
Constructor and Description |
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FragmentAnnotator(Peptide peptide,
SimplePeptideAnnotator.IonSeries ionSeries)
Constructor.
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FragmentAnnotator(Peptide peptide,
SimplePeptideAnnotator.IonSeries ionSeries,
boolean forward,
boolean complementary)
Constructor.
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Modifier and Type | Method and Description |
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ArrayList<IonMatch> |
getIonMatches(SpectrumIndex spectrumIndex,
int peptideCharge)
Returns the ions matched in the given spectrum at the given charge.
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public FragmentAnnotator(Peptide peptide, SimplePeptideAnnotator.IonSeries ionSeries) throws InterruptedException
peptide
- the peptideionSeries
- the ion series to annotateInterruptedException
- exception thrown if a thread is
interruptedpublic FragmentAnnotator(Peptide peptide, SimplePeptideAnnotator.IonSeries ionSeries, boolean forward, boolean complementary) throws InterruptedException
peptide
- the peptideionSeries
- the ion series to annotateforward
- boolean indicating whether forward ions should be
annotatedcomplementary
- boolean indicating whether complementary ions should
be annotatedInterruptedException
- exception thrown if a thread is
interruptedpublic ArrayList<IonMatch> getIonMatches(SpectrumIndex spectrumIndex, int peptideCharge)
spectrumIndex
- the index of the spectrumpeptideCharge
- the charge of the peptideCopyright © 2018. All rights reserved.