Package | Description |
---|---|
com.compomics.util.experiment.biology.genes |
Classes related to genes.
|
com.compomics.util.experiment.io.biology.protein |
Experiment IO classes for biological resources.
|
com.compomics.util.experiment.io.biology.protein.converters |
Fasta file converters.
|
Modifier and Type | Method and Description |
---|---|
GeneMaps |
ProteinGeneDetailsProvider.getGeneMaps(GeneParameters genePreferences,
FastaSummary fastaSummary,
SequenceProvider sequenceProvider,
ProteinDetailsProvider proteinDetailsProvider,
WaitingHandler waitingHandler)
Returns the gene maps for the given proteins.
|
Modifier and Type | Method and Description |
---|---|
static FastaSummary |
FastaSummary.getSummary(File fastaFile,
FastaParameters fastaParameters,
WaitingHandler waitingHandler)
Gathers summary data on the fasta file content.
|
Modifier and Type | Method and Description |
---|---|
static FastaSummary |
DecoyConverter.getDecoySummary(File newFastaFile,
FastaSummary targetSummary)
Returns the FASTA summary of the target-decoy database based on the summary of the target database.
|
Modifier and Type | Method and Description |
---|---|
static FastaSummary |
DecoyConverter.getDecoySummary(File newFastaFile,
FastaSummary targetSummary)
Returns the FASTA summary of the target-decoy database based on the summary of the target database.
|
Copyright © 2018. All rights reserved.