Package | Description |
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com.compomics.util.experiment.biology.mutations |
Experiment classes related to mutations.
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Modifier and Type | Field and Description |
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static MutationMatrix[] |
MutationMatrix.defaultMutationMatrices
Deprecated.
Returns the implemented default mutation matrices.
|
static MutationMatrix |
MutationMatrix.singleBaseSubstitution
Deprecated.
Mutation matrix allowing for a single base mutation.
|
static MutationMatrix |
MutationMatrix.synonymousMutation
Deprecated.
Mutation matrix grouping synonymous amino acids.
|
static MutationMatrix |
MutationMatrix.transitionsSingleBaseSubstitution
Deprecated.
Mutation matrix allowing for a single base transitions mutation.
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static MutationMatrix |
MutationMatrix.transversalSingleBaseSubstitution
Deprecated.
Mutation matrix allowing for a single base transversion mutation.
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Modifier and Type | Method and Description |
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void |
MutationMatrix.add(MutationMatrix otherMatrix)
Deprecated.
Adds the content of a mutation matrix in this matrix.
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boolean |
MutationMatrix.isSameAs(MutationMatrix mutationMatrix)
Deprecated.
Indicates whether the two MutationMatrix are the same.
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