Experiment classes related to quantification.
The quantification methods implemented are:
- MS2 reporter ion based quantification (for instance iTRAQ and TMT)
- Spectrum counting (emPAI and NSAF, in PeptideShaker)
TODO:
- MS1 labeling strategies (like SILAC, 18O, ICAT, AQUA, ICPL)
- MS1 label free quantification
- TIC