Uses of Class
com.compomics.util.experiment.identification.psm_scoring.PsmScore
Package | Description |
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com.compomics.util.experiment.identification.psm_scoring |
Main PSM scoring class.
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Uses of PsmScore in com.compomics.util.experiment.identification.psm_scoring
Methods in com.compomics.util.experiment.identification.psm_scoring that return PsmScore Modifier and Type Method Description static PsmScore
PsmScore. getScore(int scoreIndex)
Returns the PSM score of the given index.static PsmScore
PsmScore. getScore(String scoreName)
Returns the PSM score of the given name.static PsmScore
PsmScore. valueOf(String name)
Returns the enum constant of this type with the specified name.static PsmScore[]
PsmScore. values()
Returns an array containing the constants of this enum type, in the order they are declared.Methods in com.compomics.util.experiment.identification.psm_scoring with parameters of type PsmScore Modifier and Type Method Description double
PsmScoresEstimator. getScore(Peptide peptide, int peptideCharge, String spectrumFile, String spectrumTitle, Spectrum spectrum, IdentificationParameters identificationParameters, SpecificAnnotationParameters specificAnnotationParameters, ModificationParameters modificationParameters, SequenceProvider sequenceProvider, SequenceMatchingParameters modificationSequenceMatchingParameters, PeptideSpectrumAnnotator peptideSpectrumAnnotator, PsmScore psmScore)
Scores the match between the given peptide and spectrum using the given score.