Uses of Class
com.compomics.util.experiment.identification.protein_sequences.digestion.ExtendedPeptide
Package | Description |
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com.compomics.util.experiment.identification.protein_sequences.digestion |
This package contains classes used to digest protein sequences into peptides.
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com.compomics.util.experiment.identification.protein_sequences.digestion.iterators |
This package contains implementations of the SequenceIterator interface.
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Uses of ExtendedPeptide in com.compomics.util.experiment.identification.protein_sequences.digestion
Methods in com.compomics.util.experiment.identification.protein_sequences.digestion that return ExtendedPeptide Modifier and Type Method Description ExtendedPeptide
SequenceIterator. getNextPeptide()
Returns the next peptide that can be generated from the iterator.ExtendedPeptide
PeptideDraft. getPeptide(double massMin, double massMax)
Returns a peptide from the peptide draft.ExtendedPeptide
PeptideDraft. getPeptide(double massMin, double massMax, BoxedObject<Boolean> smallMass)
Returns a peptide from the peptide draft.ExtendedPeptide
ProteinIteratorUtils. getPeptideFromProtein(char[] proteinSequence, int indexOnProtein, double massMin, double massMax)
Returns a peptide from the given sequence.ExtendedPeptide
ProteinIteratorUtils. getPeptideFromProtein(char[] peptideSequence, String proteinSequence, int indexOnProtein, double massMin, double massMax, BoxedObject<Boolean> smallMass)
Returns a peptide from the given sequence on the given protein.ExtendedPeptide
ProteinIteratorUtils. getPeptideFromProtein(char[] peptideSequence, String proteinSequence, int indexOnProtein, Double massMin, Double massMax)
Returns a peptide from the given sequence on the given protein. -
Uses of ExtendedPeptide in com.compomics.util.experiment.identification.protein_sequences.digestion.iterators
Methods in com.compomics.util.experiment.identification.protein_sequences.digestion.iterators that return ExtendedPeptide Modifier and Type Method Description ExtendedPeptide
NoDigestionCombinationIterator. getNextPeptide()
ExtendedPeptide
NoDigestionIterator. getNextPeptide()
ExtendedPeptide
SpecificSingleEnzymeCombinationIterator. getNextPeptide()
ExtendedPeptide
SpecificSingleEnzymeIterator. getNextPeptide()
ExtendedPeptide
UnspecificCombinationIterator. getNextPeptide()
ExtendedPeptide
UnspecificIterator. getNextPeptide()