java.lang.Object
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AAIdentityFeature
All Implemented Interfaces:
Ms2pipFeature
Direct Known Subclasses:
AAIdentityFeatureAbsolute, AAIdentityFeatureRelative

public abstract class AAIdentityFeature
extends Object
implements Ms2pipFeature
Feature based on an amino acid identity.
Author:
Marc Vaudel
  • Field Summary

    Fields 
    Modifier and Type Field Description
    protected int aaIndex
    The index on the sequence.
    protected char aminoAcid
    The amino acid targeted represented as single letter code.

    Fields inherited from interface com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature

    implementations
  • Constructor Summary

    Constructors 
    Constructor Description
    AAIdentityFeature()
    Empty default constructor
  • Method Summary

    Modifier and Type Method Description
    int getAaIndex()
    Returns the index on the sequence.
    char getAminoAcid()
    Returns the amino acid targeted represented as single letter code.
    void setAaIndex​(int aaIndex)
    Sets the index on the sequence.
    void setAminoAcid​(char aminoAcid)
    Sets the amino acid targeted represented as single letter code.

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    Methods inherited from interface com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature

    getCategory, getDescription, getIndex
  • Field Details

    • aaIndex

      protected int aaIndex
      The index on the sequence.
    • aminoAcid

      protected char aminoAcid
      The amino acid targeted represented as single letter code.
  • Constructor Details

  • Method Details

    • getAaIndex

      public int getAaIndex()
      Returns the index on the sequence.
      Returns:
      the index on the sequence
    • setAaIndex

      public void setAaIndex​(int aaIndex)
      Sets the index on the sequence.
      Parameters:
      aaIndex - the index on the sequence
    • getAminoAcid

      public char getAminoAcid()
      Returns the amino acid targeted represented as single letter code.
      Returns:
      the amino acid targeted represented as single letter code
    • setAminoAcid

      public void setAminoAcid​(char aminoAcid)
      Sets the amino acid targeted represented as single letter code.
      Parameters:
      aminoAcid - the amino acid targeted represented as single letter code