Uses of Package
com.compomics.util.parameters.identification.search
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Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.biology.aminoacids.sequence Class Description ModificationParameters This class stores the information about the modification parameters (usage, colors, names). -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.biology.ions Class Description ModificationParameters This class stores the information about the modification parameters (usage, colors, names). -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.biology.modifications Class Description ModificationParameters This class stores the information about the modification parameters (usage, colors, names).SearchParameters This class groups the parameters used for identification. -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.biology.proteins Class Description DigestionParameters This class groups the parameters for the digestion of proteins.ModificationParameters This class stores the information about the modification parameters (usage, colors, names). -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.identification.amino_acid_tags Class Description ModificationParameters This class stores the information about the modification parameters (usage, colors, names). -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.identification.features Class Description DigestionParameters This class groups the parameters for the digestion of proteins. -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.identification.filtering Class Description DigestionParameters This class groups the parameters for the digestion of proteins.ModificationParameters This class stores the information about the modification parameters (usage, colors, names).SearchParameters This class groups the parameters used for identification. -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.identification.modification Class Description ModificationParameters This class stores the information about the modification parameters (usage, colors, names). -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.identification.modification.mapping Class Description SearchParameters This class groups the parameters used for identification. -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.identification.modification.scores Class Description ModificationParameters This class stores the information about the modification parameters (usage, colors, names). -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_generation Class Description ModificationParameters This class stores the information about the modification parameters (usage, colors, names). -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.identification.protein_inference.fm_index Class Description SearchParameters This class groups the parameters used for identification. -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.identification.protein_sequences.digestion Class Description DigestionParameters This class groups the parameters for the digestion of proteins. -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.identification.psm_scoring Class Description ModificationParameters This class stores the information about the modification parameters (usage, colors, names). -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.identification.psm_scoring.psm_scores Class Description ModificationParameters This class stores the information about the modification parameters (usage, colors, names). -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.identification.spectrum_annotation Class Description ModificationParameters This class stores the information about the modification parameters (usage, colors, names).SearchParameters This class groups the parameters used for identification. -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators Class Description ModificationParameters This class stores the information about the modification parameters (usage, colors, names). -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.identification.utils Class Description ModificationParameters This class stores the information about the modification parameters (usage, colors, names).SearchParameters This class groups the parameters used for identification. -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.io.identification Class Description SearchParameters This class groups the parameters used for identification. -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.io.identification.idfilereaders Class Description SearchParameters This class groups the parameters used for identification. -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.experiment.io.mass_spectrometry Class Description SearchParameters This class groups the parameters used for identification. -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.gui.modification Class Description ModificationParameters This class stores the information about the modification parameters (usage, colors, names). -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.gui.parameters.identification.advanced Class Description SearchParameters This class groups the parameters used for identification. -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.gui.parameters.identification.algorithm Class Description ModificationParameters This class stores the information about the modification parameters (usage, colors, names). -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.gui.parameters.identification.search Class Description SearchParameters This class groups the parameters used for identification. -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.gui.spectrum Class Description ModificationParameters This class stores the information about the modification parameters (usage, colors, names). -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.parameters.identification Class Description SearchParameters This class groups the parameters used for identification. -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.parameters.identification.search Class Description DigestionParameters This class groups the parameters for the digestion of proteins.DigestionParameters.CleavageParameter Enum for the different types of digestion.DigestionParameters.Specificity Enum for the different types of enzyme specificity.ModificationParameters This class stores the information about the modification parameters (usage, colors, names).SearchParameters This class groups the parameters used for identification.SearchParameters.MassAccuracyType Possible mass accuracy types. -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.parameters.identification.tool_specific Class Description DigestionParameters This class groups the parameters for the digestion of proteins.ModificationParameters This class stores the information about the modification parameters (usage, colors, names). -
Classes in com.compomics.util.parameters.identification.search used by com.compomics.util.pride Class Description SearchParameters This class groups the parameters used for identification.