Uses of Package
com.compomics.util.experiment.identification.matches
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Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.biology.aminoacids.sequence Class Description ModificationMatch This class models the match between theoretic PTM and identification results. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.biology.proteins Class Description ModificationMatch This class models the match between theoretic PTM and identification results.PeptideVariantMatches This class represents a set of variants found on a peptide. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification Class Description IonMatch This class represents the assignment of a peak to a theoretical ion.PeptideMatch This class models a peptide match.ProteinMatch This class models a protein match.SpectrumMatch This class models a spectrum match. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.matches Class Description IonMatch.MzErrorType Enum of the supported error types.ModificationMatch This class models the match between theoretic PTM and identification results. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.matches_iterators Class Description PeptideMatch This class models a peptide match.ProteinMatch This class models a protein match.SpectrumMatch This class models a spectrum match. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.modification Class Description IonMatch This class represents the assignment of a peak to a theoretical ion. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.modification.mapping Class Description ModificationMatch This class models the match between theoretic PTM and identification results. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.protein_inference Class Description ModificationMatch This class models the match between theoretic PTM and identification results.PeptideVariantMatches This class represents a set of variants found on a peptide.SpectrumMatch This class models a spectrum match. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.protein_inference.fm_index Class Description ModificationMatch This class models the match between theoretic PTM and identification results. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.psm_scoring.psm_scores Class Description IonMatch This class represents the assignment of a peak to a theoretical ion. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.spectrum_annotation Class Description IonMatch This class represents the assignment of a peak to a theoretical ion. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.spectrum_annotation.simple_annotators Class Description IonMatch This class represents the assignment of a peak to a theoretical ion. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators Class Description IonMatch This class represents the assignment of a peak to a theoretical ion. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.utils Class Description ModificationMatch This class models the match between theoretic PTM and identification results. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.io.identification Class Description SpectrumMatch This class models a spectrum match. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.io.identification.idfilereaders Class Description SpectrumMatch This class models a spectrum match. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.gui.genes Class Description ProteinMatch This class models a protein match. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.gui.modification Class Description PeptideMatch This class models a peptide match. -
Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.gui.spectrum Class Description IonMatch This class represents the assignment of a peak to a theoretical ion.