Class SequestFragmentationModel
java.lang.Object
com.compomics.util.experiment.identification.peptide_fragmentation.models.SequestFragmentationModel
public class SequestFragmentationModel extends Object
Fragmentation model originally described in the Sequest algorithm
(https://www.ncbi.nlm.nih.gov/pubmed/24226387) adapted to utilities objects.
- Author:
- Marc Vaudel
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Constructor Summary
Constructors Constructor Description SequestFragmentationModel()
Empty default constructor -
Method Summary
Modifier and Type Method Description static Double
getIntensity(Ion ion)
Returns the intensity expected for the given ion.
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Constructor Details
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SequestFragmentationModel
public SequestFragmentationModel()Empty default constructor
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Method Details
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getIntensity
Returns the intensity expected for the given ion. 50.0 for b and y ions with no neutral losses. 25.0 for a ions and b and y ions with neutral losses. 0.0 for other peaks.- Parameters:
ion
- the ion of interest- Returns:
- the expected intensity
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