Uses of Class
com.compomics.util.experiment.quantification.spectrumcounting.SpectrumCountingMethod
Package | Description |
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com.compomics.util.experiment.identification.features |
Classes for the generation of identification features.
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com.compomics.util.experiment.quantification.spectrumcounting |
Experiment classes related to spectrum counting.
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com.compomics.util.parameters.quantification.spectrum_counting |
Spectrum counting parameters.
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Uses of SpectrumCountingMethod in com.compomics.util.experiment.identification.features
Methods in com.compomics.util.experiment.identification.features with parameters of type SpectrumCountingMethod Modifier and Type Method Description double
IdentificationFeaturesGenerator. getNormalizedSpectrumCounting(long proteinMatchKey, Metrics metrics, UnitOfMeasurement unit, Double referenceMass, SpectrumCountingMethod method)
Returns the spectrum counting metric of the protein match of interest using the preference settings normalized to the injected protein amount.double
IdentificationFeaturesGenerator. getNormalizedSpectrumCounting(long proteinMatchKey, UnitOfMeasurement unit, SpectrumCountingMethod method)
Returns the spectrum counting metric of the protein match of interest using the preference settings normalized to the injected protein amount.Double
IdentificationFeaturesGenerator. getSpectrumCounting(long proteinMatchKey, SpectrumCountingMethod method)
Returns the spectrum counting metric of the protein match of interest for the given method. -
Uses of SpectrumCountingMethod in com.compomics.util.experiment.quantification.spectrumcounting
Methods in com.compomics.util.experiment.quantification.spectrumcounting that return SpectrumCountingMethod Modifier and Type Method Description static SpectrumCountingMethod
SpectrumCountingMethod. valueOf(String name)
Returns the enum constant of this type with the specified name.static SpectrumCountingMethod[]
SpectrumCountingMethod. values()
Returns an array containing the constants of this enum type, in the order they are declared. -
Uses of SpectrumCountingMethod in com.compomics.util.parameters.quantification.spectrum_counting
Methods in com.compomics.util.parameters.quantification.spectrum_counting that return SpectrumCountingMethod Modifier and Type Method Description SpectrumCountingMethod
SpectrumCountingParameters. getSelectedMethod()
Returns the current spectrum counting method.Methods in com.compomics.util.parameters.quantification.spectrum_counting with parameters of type SpectrumCountingMethod Modifier and Type Method Description void
SpectrumCountingParameters. setSelectedMethod(SpectrumCountingMethod selectedMethod)
Set the current spectrum counting method.