java.lang.Object
com.compomics.util.experiment.identification.protein_sequences.digestion.iterators.SpecificSingleEnzymeIterator
All Implemented Interfaces:
SequenceIterator

public class SpecificSingleEnzymeIterator
extends Object
implements SequenceIterator
Iterator for enzymatic digestion.
Author:
Marc Vaudel, Harald Barsnes
  • Constructor Details

    • SpecificSingleEnzymeIterator

      public SpecificSingleEnzymeIterator()
      Empty default constructor
    • SpecificSingleEnzymeIterator

      public SpecificSingleEnzymeIterator​(ProteinIteratorUtils proteinIteratorUtils, String proteinSequence, Enzyme enzyme, int nMissedCleavages, double massMin, double massMax)
      Constructor.
      Parameters:
      proteinIteratorUtils - utils for the creation of the peptides
      proteinSequence - the sequence to iterate
      enzyme - the enzyme to use for digestion
      nMissedCleavages - the maximal number of missed cleavages allowed
      massMin - the minimal mass of a peptide
      massMax - the maximal mass of a peptide
  • Method Details