Uses of Class
com.compomics.util.experiment.biology.aminoacids.AminoAcid
Package | Description |
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com.compomics.util.experiment.biology.aminoacids |
The amino acid classes.
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com.compomics.util.experiment.biology.aminoacids.impl |
The amino acid implementations.
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com.compomics.util.experiment.biology.aminoacids.sequence |
Classes related to the handling of protein sequences.
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com.compomics.util.experiment.biology.ions.impl |
Ion implementations.
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Uses of AminoAcid in com.compomics.util.experiment.biology.aminoacids
Fields in com.compomics.util.experiment.biology.aminoacids declared as AminoAcid Modifier and Type Field Description static AminoAcid
AminoAcid. A
static AminoAcid
AminoAcid. B
static AminoAcid
AminoAcid. C
static AminoAcid
AminoAcid. D
static AminoAcid
AminoAcid. E
static AminoAcid
AminoAcid. F
static AminoAcid
AminoAcid. G
static AminoAcid
AminoAcid. H
static AminoAcid
AminoAcid. I
static AminoAcid
AminoAcid. J
static AminoAcid
AminoAcid. K
static AminoAcid
AminoAcid. L
static AminoAcid
AminoAcid. M
static AminoAcid
AminoAcid. N
static AminoAcid
AminoAcid. O
static AminoAcid
AminoAcid. P
static AminoAcid
AminoAcid. Q
static AminoAcid
AminoAcid. R
static AminoAcid
AminoAcid. S
static AminoAcid
AminoAcid. T
static AminoAcid
AminoAcid. U
static AminoAcid
AminoAcid. V
static AminoAcid
AminoAcid. W
static AminoAcid
AminoAcid. X
static AminoAcid
AminoAcid. Y
static AminoAcid
AminoAcid. Z
Methods in com.compomics.util.experiment.biology.aminoacids that return AminoAcid Modifier and Type Method Description static AminoAcid
AminoAcid. getAminoAcid(char aa)
Returns the amino acid corresponding to the single letter code given.static AminoAcid
AminoAcid. getAminoAcid(String aa)
Returns the amino acid corresponding to the letter given.static AminoAcid
AminoAcid. getAminoAcidFromGeneticCode(String geneticCode)
Returns the amino acid from the standard genetic code. -
Uses of AminoAcid in com.compomics.util.experiment.biology.aminoacids.impl
Subclasses of AminoAcid in com.compomics.util.experiment.biology.aminoacids.impl Modifier and Type Class Description class
Alanine
Alanine.class
Arginine
Arginine.class
Asparagine
Asparagine.class
AsparticAcid
Aspartic Acid.class
B
Asn or Asp: Asx (Mascot).class
Cysteine
Cysteine.class
GlutamicAcid
Glutamic Acid.class
Glutamine
Glutamine.class
Glycine
Glycine.class
Histidine
Histidine.class
Isoleucine
Isoleucine.class
J
Isoleucine or Leucine.class
Leucine
Leucine.class
Lysine
Lysine.class
Methionine
Methionine.class
Phenylalanine
Phenylalanine.class
Proline
Proline.class
Pyrrolysine
Pyrrolysine.class
Selenocysteine
SeC (U) (Mascot)-class
Serine
Serine.class
Threonine
Threonine.class
Tryptophan
Tryptophan.class
Tyrosine
Tyrosine.class
Valine
Valine.class
X
Unknown amino acid (Mascot).class
Z
Glu or Gln: Glx (Mascot). -
Uses of AminoAcid in com.compomics.util.experiment.biology.aminoacids.sequence
Methods in com.compomics.util.experiment.biology.aminoacids.sequence that return AminoAcid Modifier and Type Method Description AminoAcid
AminoAcidSequence. getAminoAcidAt(int aa)
Returns the amino acid at the given index on the sequence. -
Uses of AminoAcid in com.compomics.util.experiment.biology.ions.impl
Methods in com.compomics.util.experiment.biology.ions.impl with parameters of type AminoAcid Modifier and Type Method Description static ArrayList<RelatedIon>
RelatedIon. getRelatedIons(AminoAcid aminoAcidTarget)
Returns the list of related ions for the given amino acid.Constructors in com.compomics.util.experiment.biology.ions.impl with parameters of type AminoAcid Constructor Description RelatedIon(AminoAcid aminoAcidTarget, AtomChain atomChain, int subType)
Constructor for a related ion.RelatedIon(AminoAcid aminoAcidTarget, AtomChain atomChain, int subType, boolean save)
Constructor for a related ion.