Uses of Package
com.compomics.util.experiment.biology.ions
Package | Description |
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com.compomics.util.experiment.biology.ions |
Experiment classes related to ions.
|
com.compomics.util.experiment.biology.ions.impl |
Ion implementations.
|
com.compomics.util.experiment.biology.modifications | |
com.compomics.util.experiment.identification.matches |
Experiment classes related to matches.
|
com.compomics.util.experiment.identification.peptide_fragmentation |
Peptide fragment intensities.
|
com.compomics.util.experiment.identification.peptide_fragmentation.models |
Predictors for peptide fragment intensities.
|
com.compomics.util.experiment.identification.spectrum_annotation |
Classes used for ms2 spectrum annotation.
|
com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators |
This package contains implementations of the SpectrumAnnotator allowing the annotation of all ions.
|
com.compomics.util.gui.spectrum |
Spectrum and Chromatogram visualization GUI classes.
|
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Classes in com.compomics.util.experiment.biology.ions used by com.compomics.util.experiment.biology.ions Class Description Ion This class models an ion.Ion.IonType An enumerator of the supported ion types.IonFactory This factory generates the expected ions from a peptide.NeutralLoss This class represents a neutral loss.NeutralLossCombination This class represents a combination of multiple neutral losses. -
Classes in com.compomics.util.experiment.biology.ions used by com.compomics.util.experiment.biology.ions.impl Class Description Ion This class models an ion.NeutralLoss This class represents a neutral loss. -
Classes in com.compomics.util.experiment.biology.ions used by com.compomics.util.experiment.biology.modifications Class Description NeutralLoss This class represents a neutral loss. -
Classes in com.compomics.util.experiment.biology.ions used by com.compomics.util.experiment.identification.matches Class Description Ion This class models an ion. -
Classes in com.compomics.util.experiment.biology.ions used by com.compomics.util.experiment.identification.peptide_fragmentation Class Description Ion This class models an ion. -
Classes in com.compomics.util.experiment.biology.ions used by com.compomics.util.experiment.identification.peptide_fragmentation.models Class Description Ion This class models an ion. -
Classes in com.compomics.util.experiment.biology.ions used by com.compomics.util.experiment.identification.spectrum_annotation Class Description Ion This class models an ion.Ion.IonType An enumerator of the supported ion types.IonFactory This factory generates the expected ions from a peptide.NeutralLoss This class represents a neutral loss. -
Classes in com.compomics.util.experiment.biology.ions used by com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators Class Description Ion This class models an ion. -
Classes in com.compomics.util.experiment.biology.ions used by com.compomics.util.gui.spectrum Class Description Ion This class models an ion.Ion.IonType An enumerator of the supported ion types.NeutralLoss This class represents a neutral loss.