Uses of Interface
com.compomics.util.experiment.personalization.UrParameter
Package | Description |
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com.compomics.util.experiment.identification.peptide_shaker |
Experiment classes used in PeptideShaker calculations.
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com.compomics.util.experiment.personalization |
Experiment customization classes.
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com.compomics.util.experiment.refinement_parameters |
Experiment classes related to specific parametrization of experiment objects.
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Uses of UrParameter in com.compomics.util.experiment.identification.peptide_shaker
Classes in com.compomics.util.experiment.identification.peptide_shaker that implement UrParameter Modifier and Type Class Description class
PSModificationScores
This class contains the scores for the locations of the possible modifications.class
PSParameter
PeptideShaker compomics utilities experiment customizable parameter. -
Uses of UrParameter in com.compomics.util.experiment.personalization
Methods in com.compomics.util.experiment.personalization that return UrParameter Modifier and Type Method Description UrParameter
ExperimentObject. getUrParam(UrParameter parameter)
Returns the refinement parameter of the same type than the one provided.Methods in com.compomics.util.experiment.personalization that return types with arguments of type UrParameter Modifier and Type Method Description HashMap<Long,UrParameter>
ExperimentObject. getUrParams()
Returns the user parameters map.Methods in com.compomics.util.experiment.personalization with parameters of type UrParameter Modifier and Type Method Description void
ExperimentObject. addUrParam(UrParameter parameter)
Adds a user refinement parameter.UrParameter
ExperimentObject. getUrParam(UrParameter parameter)
Returns the refinement parameter of the same type than the one provided.Method parameters in com.compomics.util.experiment.personalization with type arguments of type UrParameter Modifier and Type Method Description void
ExperimentObject. setUrParams(HashMap<Long,UrParameter> urParams)
Sets the user parameters map. -
Uses of UrParameter in com.compomics.util.experiment.refinement_parameters
Classes in com.compomics.util.experiment.refinement_parameters that implement UrParameter Modifier and Type Class Description class
PepnovoAssumptionDetails
This class contains pepnovo assumption details which are not contained in the tag assumption class which will be saved as additional parameter.