Package com.compomics.util.experiment.identification.spectrum_annotation
Classes used for ms2 spectrum annotation.
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Class Summary Class Description AnnotationParameters This class contains the spectrum annotation parameters.IonMatchKeysCache Cache for the keys of the ions.NeutralLossesMap This class contains the informations relative to the accounting of neutral lossesSpecificAnnotationParameters The spectrum annotation preferences specific to a spectrum and an identification assumption.SpectrumAnnotator The spectrum annotator annotates peaks in a spectrum. -
Enum Summary Enum Description AnnotationParameters.IntensityThresholdType Enum of the types of intensity thresholds available.SpectrumAnnotator.TiesResolution Enum of the possibilities for ties resolution when multiple peaks can be annotated.