Class Reagent
java.lang.Object
com.compomics.util.experiment.quantification.reporterion.Reagent
public class Reagent extends Object
A reporter ion labeling reagent.
- Author:
- Marc Vaudel
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Constructor Summary
Constructors Constructor Description Reagent()
Empty default constructor -
Method Summary
Modifier and Type Method Description double
getMinus1()
Returns the isotopic correction factor at -1 Da.double
getMinus2()
Returns the isotopic correction factor at -2 Da.String
getName()
Returns the name of the reagent.double
getPlus1()
Returns the isotopic correction factor at +1 Da.double
getPlus2()
Returns the isotopic correction factor at +2 Da.double
getRef()
Returns the value used as reference for the correction factors.ReporterIon
getReporterIon()
Returns the reporter ion to look for in the spectrum.void
setMinus1(double minus1)
Sets the isotopic correction factor at -1 Da.void
setMinus2(double minus2)
Sets the isotopic correction factor at -2 Da.void
setName(String name)
Sets the name of the reagent.void
setPlus1(double plus1)
Sets the isotopic correction factor at +1 Da.void
setPlus2(double plus2)
Sets the isotopic correction factor at +2 Da.void
setRef(double ref)
Sets the value used as reference for the correction factors.void
setReporterIon(ReporterIon reporterIon)
Sets the reporter ion to look for in the spectrum.
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Constructor Details
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Reagent
public Reagent()Empty default constructor
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Method Details
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getName
Returns the name of the reagent.- Returns:
- the name of the reagent
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setName
Sets the name of the reagent.- Parameters:
name
- the name of the reagent
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getReporterIon
Returns the reporter ion to look for in the spectrum.- Returns:
- the reporter ion to look for in the spectrum
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setReporterIon
Sets the reporter ion to look for in the spectrum.- Parameters:
reporterIon
- the reporter ion to look for in the spectrum
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getMinus2
public double getMinus2()Returns the isotopic correction factor at -2 Da.- Returns:
- the isotopic correction factor at -2 Da
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setMinus2
public void setMinus2(double minus2)Sets the isotopic correction factor at -2 Da.- Parameters:
minus2
- the isotopic correction factor at -2 Da
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getMinus1
public double getMinus1()Returns the isotopic correction factor at -1 Da.- Returns:
- the isotopic correction factor at -1 Da
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setMinus1
public void setMinus1(double minus1)Sets the isotopic correction factor at -1 Da.- Parameters:
minus1
- the isotopic correction factor at -1 Da
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getRef
public double getRef()Returns the value used as reference for the correction factors.- Returns:
- the value used as reference for the correction factors
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setRef
public void setRef(double ref)Sets the value used as reference for the correction factors.- Parameters:
ref
- the value used as reference for the correction factors
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getPlus1
public double getPlus1()Returns the isotopic correction factor at +1 Da.- Returns:
- the isotopic correction factor at +1 Da
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setPlus1
public void setPlus1(double plus1)Sets the isotopic correction factor at +1 Da.- Parameters:
plus1
- the isotopic correction factor at +1 Da
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getPlus2
public double getPlus2()Returns the isotopic correction factor at +2 Da.- Returns:
- the isotopic correction factor at +2 Da
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setPlus2
public void setPlus2(double plus2)Sets the isotopic correction factor at +2 Da.- Parameters:
plus2
- the isotopic correction factor at +2 Da
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