Uses of Class
com.compomics.util.experiment.biology.taxonomy.mappings.EnsemblGenomesSpecies.EnsemblGenomeDivision
Package | Description |
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com.compomics.util.experiment.biology.genes.ensembl |
Classes for the handling of Ensembl data.
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com.compomics.util.experiment.biology.taxonomy.mappings |
Classes related to species mapping.
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com.compomics.util.gui.genes |
Dialogs for the handling of genes.
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Uses of EnsemblGenomesSpecies.EnsemblGenomeDivision in com.compomics.util.experiment.biology.genes.ensembl
Methods in com.compomics.util.experiment.biology.genes.ensembl with parameters of type EnsemblGenomesSpecies.EnsemblGenomeDivision Modifier and Type Method Description static Integer
EnsemblVersion. getCurrentEnsemblVersion(EnsemblGenomesSpecies.EnsemblGenomeDivision ensemblGenomeDivision)
Returns the current Ensembl version number.static String
EnsemblVersion. getEnsemblSchemaName(EnsemblGenomesSpecies.EnsemblGenomeDivision ensemblGenomeDivision)
Returns the name of the Ensembl schema for BioMart queries. -
Uses of EnsemblGenomesSpecies.EnsemblGenomeDivision in com.compomics.util.experiment.biology.taxonomy.mappings
Methods in com.compomics.util.experiment.biology.taxonomy.mappings that return EnsemblGenomesSpecies.EnsemblGenomeDivision Modifier and Type Method Description EnsemblGenomesSpecies.EnsemblGenomeDivision
EnsemblGenomesSpecies. getDivision(Integer taxon)
Returns the division corresponding to the given NCBI taxon.static EnsemblGenomesSpecies.EnsemblGenomeDivision
EnsemblGenomesSpecies.EnsemblGenomeDivision. getEnsemblGenomeDivisionFromName(String ensemblName)
Returns the EnsemblGenomeDivision corresponding to the given Ensembl name.static EnsemblGenomesSpecies.EnsemblGenomeDivision
EnsemblGenomesSpecies.EnsemblGenomeDivision. valueOf(String name)
Returns the enum constant of this type with the specified name.static EnsemblGenomesSpecies.EnsemblGenomeDivision[]
EnsemblGenomesSpecies.EnsemblGenomeDivision. values()
Returns an array containing the constants of this enum type, in the order they are declared. -
Uses of EnsemblGenomesSpecies.EnsemblGenomeDivision in com.compomics.util.gui.genes
Methods in com.compomics.util.gui.genes with parameters of type EnsemblGenomesSpecies.EnsemblGenomeDivision Modifier and Type Method Description String
SpeciesDialog. getTypeForGenomeDivision(EnsemblGenomesSpecies.EnsemblGenomeDivision ensemblGenomeDivision)
Deprecated.Returns the display name of an Ensembl genome division.