Uses of Package
com.compomics.util.experiment.identification.spectrum_annotation
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Classes in com.compomics.util.experiment.identification.spectrum_annotation used by com.compomics.util.experiment.biology.ions Class Description SpecificAnnotationParameters The spectrum annotation preferences specific to a spectrum and an identification assumption. -
Classes in com.compomics.util.experiment.identification.spectrum_annotation used by com.compomics.util.experiment.identification.matches Class Description IonMatchKeysCache Cache for the keys of the ions. -
Classes in com.compomics.util.experiment.identification.spectrum_annotation used by com.compomics.util.experiment.identification.modification Class Description AnnotationParameters This class contains the spectrum annotation parameters.SpecificAnnotationParameters The spectrum annotation preferences specific to a spectrum and an identification assumption. -
Classes in com.compomics.util.experiment.identification.spectrum_annotation used by com.compomics.util.experiment.identification.modification.scores Class Description AnnotationParameters This class contains the spectrum annotation parameters.SpecificAnnotationParameters The spectrum annotation preferences specific to a spectrum and an identification assumption. -
Classes in com.compomics.util.experiment.identification.spectrum_annotation used by com.compomics.util.experiment.identification.psm_scoring Class Description SpecificAnnotationParameters The spectrum annotation preferences specific to a spectrum and an identification assumption. -
Classes in com.compomics.util.experiment.identification.spectrum_annotation used by com.compomics.util.experiment.identification.psm_scoring.psm_scores Class Description AnnotationParameters This class contains the spectrum annotation parameters.SpecificAnnotationParameters The spectrum annotation preferences specific to a spectrum and an identification assumption. -
Classes in com.compomics.util.experiment.identification.spectrum_annotation used by com.compomics.util.experiment.identification.spectrum_annotation Class Description AnnotationParameters This class contains the spectrum annotation parameters.AnnotationParameters.IntensityThresholdType Enum of the types of intensity thresholds available.IonMatchKeysCache Cache for the keys of the ions.NeutralLossesMap This class contains the informations relative to the accounting of neutral lossesSpecificAnnotationParameters The spectrum annotation preferences specific to a spectrum and an identification assumption.SpectrumAnnotator The spectrum annotator annotates peaks in a spectrum.SpectrumAnnotator.TiesResolution Enum of the possibilities for ties resolution when multiple peaks can be annotated. -
Classes in com.compomics.util.experiment.identification.spectrum_annotation used by com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators Class Description AnnotationParameters This class contains the spectrum annotation parameters.NeutralLossesMap This class contains the informations relative to the accounting of neutral lossesSpecificAnnotationParameters The spectrum annotation preferences specific to a spectrum and an identification assumption.SpectrumAnnotator The spectrum annotator annotates peaks in a spectrum. -
Classes in com.compomics.util.experiment.identification.spectrum_annotation used by com.compomics.util.experiment.mass_spectrometry.spectra Class Description AnnotationParameters.IntensityThresholdType Enum of the types of intensity thresholds available. -
Classes in com.compomics.util.experiment.identification.spectrum_annotation used by com.compomics.util.gui.modification Class Description AnnotationParameters This class contains the spectrum annotation parameters. -
Classes in com.compomics.util.experiment.identification.spectrum_annotation used by com.compomics.util.gui.parameters.identification.advanced Class Description AnnotationParameters This class contains the spectrum annotation parameters. -
Classes in com.compomics.util.experiment.identification.spectrum_annotation used by com.compomics.util.gui.spectrum Class Description NeutralLossesMap This class contains the informations relative to the accounting of neutral losses -
Classes in com.compomics.util.experiment.identification.spectrum_annotation used by com.compomics.util.parameters.identification Class Description AnnotationParameters This class contains the spectrum annotation parameters.