Uses of Class
com.compomics.util.experiment.identification.spectrum_annotation.SpectrumAnnotator
Package | Description |
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com.compomics.util.experiment.identification.spectrum_annotation |
Classes used for ms2 spectrum annotation.
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com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators |
This package contains implementations of the SpectrumAnnotator allowing the annotation of all ions.
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Uses of SpectrumAnnotator in com.compomics.util.experiment.identification.spectrum_annotation
Methods in com.compomics.util.experiment.identification.spectrum_annotation with parameters of type SpectrumAnnotator Modifier and Type Method Description static NeutralLossesMap
SpectrumAnnotator. getDefaultLosses(SpectrumIdentificationAssumption spectrumIdentificationAssumption, ModificationParameters modificationParameters, SequenceProvider sequenceProvider, SequenceMatchingParameters modificationsSequenceMatchingParameters, SpectrumAnnotator spectrumAnnotator)
Returns the possible neutral losses expected by default for a given peptide.SpecificAnnotationParameters
AnnotationParameters. getSpecificAnnotationParameters(String spectrumFile, String spectrumTitle, SpectrumIdentificationAssumption spectrumIdentificationAssumption, ModificationParameters modificationParameters, SequenceProvider sequenceProvider, SequenceMatchingParameters modificationSequenceMatchingParameters, SpectrumAnnotator spectrumAnnotator)
Returns the annotation preferences specific to a spectrum and an identification assumption. -
Uses of SpectrumAnnotator in com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators
Subclasses of SpectrumAnnotator in com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators Modifier and Type Class Description class
PeptideSpectrumAnnotator
Annotates a spectrum with peptide fragments.class
TagSpectrumAnnotator
Annotates a spectrum with information from a tag.