Enum IdentificationFeaturesCache.ObjectType
java.lang.Object
java.lang.Enum<IdentificationFeaturesCache.ObjectType>
com.compomics.util.experiment.identification.features.IdentificationFeaturesCache.ObjectType
- All Implemented Interfaces:
Serializable
,Comparable<IdentificationFeaturesCache.ObjectType>
,java.lang.constant.Constable
- Enclosing class:
- IdentificationFeaturesCache
public static enum IdentificationFeaturesCache.ObjectType extends Enum<IdentificationFeaturesCache.ObjectType>
An enumerator of the supported object types.
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Nested Class Summary
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Enum Constant Summary
Enum Constants Enum Constant Description AA_coverage
The amino acid coverage of a given protein.containsEnzymaticPeptides
If a given protein accession contains enzymatic peptides: true or false.coverable_AA_p
The likelihood to cover amino acids.expected_coverage
The expected sequence coverage of a given protein.max_psm_mz_for_peptides
The max mz value for all the PSMs for a given peptide.number_of_confident_peptides
The number of confident peptides of a given protein.number_of_confident_spectra
The number of confident spectra.number_of_spectra
The number of spectra of a given protein.number_of_validated_peptides
The number of validated peptides of a given protein.number_of_validated_spectra
The number of validated spectra.protein_groups_for_peptide
The number of validated protein groups for a peptide.sequence_coverage
The sequence coverage of a given protein using validated peptides.sequence_validation_coverage
The sequence coverage of a given protein.spectrum_counting
The spectrum counting index of a given protein.tryptic_protein
The non-tryptic peptides of a protein.unique_peptides
The number of unique peptides.unique_validated_peptides
The number of unique validated peptides. -
Field Summary
Fields Modifier and Type Field Description boolean
large
Boolean indicating whether this category contains large objects. -
Method Summary
Modifier and Type Method Description static IdentificationFeaturesCache.ObjectType
valueOf(String name)
Returns the enum constant of this type with the specified name.static IdentificationFeaturesCache.ObjectType[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Details
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tryptic_protein
The non-tryptic peptides of a protein. -
coverable_AA_p
The likelihood to cover amino acids. -
AA_coverage
The amino acid coverage of a given protein. -
number_of_validated_peptides
The number of validated peptides of a given protein. -
number_of_confident_peptides
The number of confident peptides of a given protein. -
number_of_spectra
The number of spectra of a given protein. -
number_of_validated_spectra
The number of validated spectra. -
number_of_confident_spectra
The number of confident spectra. -
unique_peptides
The number of unique peptides. -
unique_validated_peptides
The number of unique validated peptides. -
protein_groups_for_peptide
The number of validated protein groups for a peptide. -
containsEnzymaticPeptides
If a given protein accession contains enzymatic peptides: true or false. -
max_psm_mz_for_peptides
The max mz value for all the PSMs for a given peptide. -
sequence_coverage
The sequence coverage of a given protein using validated peptides. -
sequence_validation_coverage
The sequence coverage of a given protein. -
expected_coverage
The expected sequence coverage of a given protein. -
spectrum_counting
The spectrum counting index of a given protein.
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Field Details
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large
public final boolean largeBoolean indicating whether this category contains large objects.
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Method Details
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values
Returns an array containing the constants of this enum type, in the order they are declared.- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null
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