Uses of Class
com.compomics.util.experiment.mass_spectrometry.spectra.Spectrum

Packages that use Spectrum 
Package Description
com.compomics.util.experiment.identification.modification
Modification mapping and localization.
com.compomics.util.experiment.identification.modification.scores
PTM scores.
com.compomics.util.experiment.identification.psm_scoring
Main PSM scoring class.
com.compomics.util.experiment.identification.psm_scoring.psm_scores
Main PTM scoring classes.
com.compomics.util.experiment.identification.spectrum_annotation
Classes used for ms2 spectrum annotation.
com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators
This package contains implementations of the SpectrumAnnotator allowing the annotation of all ions.
com.compomics.util.experiment.io.mass_spectrometry
Classes for the handling of mass spectrometry files.
com.compomics.util.experiment.io.mass_spectrometry.apl
Classes for the handling of Andromeda peak list (apl) files.
com.compomics.util.experiment.io.mass_spectrometry.cms
Classes for the handling of Compomics mass spectrometry (cms) files.
com.compomics.util.experiment.io.mass_spectrometry.mgf
Classes for the handling of mgf files.
com.compomics.util.experiment.io.mass_spectrometry.ms2
Classes for the handling of ms2 files.
com.compomics.util.experiment.io.mass_spectrometry.mzml
Classes for the handling of mzml files.
com.compomics.util.experiment.mass_spectrometry
Experiment classes related to mass spectrometry.
com.compomics.util.experiment.mass_spectrometry.spectra
Experiment classes related to spectra.
com.compomics.util.gui.spectrum
Spectrum and Chromatogram visualization GUI classes.