Uses of Interface
com.compomics.util.gui.interfaces.SpectrumAnnotation
Package | Description |
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com.compomics.util.experiment.identification.spectrum_annotation |
Classes used for ms2 spectrum annotation.
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com.compomics.util.gui.spectrum |
Spectrum and Chromatogram visualization GUI classes.
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Uses of SpectrumAnnotation in com.compomics.util.experiment.identification.spectrum_annotation
Methods in com.compomics.util.experiment.identification.spectrum_annotation that return types with arguments of type SpectrumAnnotation Modifier and Type Method Description static Vector<SpectrumAnnotation>
SpectrumAnnotator. getSpectrumAnnotation(IonMatch[] ionMatches)
Translates the list of ion matches into a vector of annotations which can be read by the SpectrumPanel. -
Uses of SpectrumAnnotation in com.compomics.util.gui.spectrum
Classes in com.compomics.util.gui.spectrum that implement SpectrumAnnotation Modifier and Type Class Description class
DefaultSpectrumAnnotation
This class provides a default implementation of the SpectrumAnnotation interface.Methods in com.compomics.util.gui.spectrum that return types with arguments of type SpectrumAnnotation Modifier and Type Method Description static Vector<SpectrumAnnotation>
SpectrumPanel. filterAnnotations(Vector<SpectrumAnnotation> annotations, HashMap<Ion.IonType,HashSet<Integer>> iontypes, ArrayList<NeutralLoss> neutralLosses, boolean singleChargeSelected, boolean doubleChargeSelected, boolean moreThanTwoChargesSelected)
Deprecated.used only in demo classesMethods in com.compomics.util.gui.spectrum with parameters of type SpectrumAnnotation Modifier and Type Method Description protected void
GraphicsPanel. annotate(SpectrumAnnotation aSA, Graphics g, HashMap<String,Integer> aAlreadyAnnotated, boolean mirrored)
This method attempts to find the specified SpectrumAnnotation in the current peak list and if so, annotates it correspondingly on the screen.Method parameters in com.compomics.util.gui.spectrum with type arguments of type SpectrumAnnotation Modifier and Type Method Description static Vector<SpectrumAnnotation>
SpectrumPanel. filterAnnotations(Vector<SpectrumAnnotation> annotations, HashMap<Ion.IonType,HashSet<Integer>> iontypes, ArrayList<NeutralLoss> neutralLosses, boolean singleChargeSelected, boolean doubleChargeSelected, boolean moreThanTwoChargesSelected)
Deprecated.used only in demo classesvoid
GraphicsPanel. setAnnotations(List<SpectrumAnnotation> aAnnotations)
This method sets all the annotations on this instance.void
GraphicsPanel. setAnnotations(List<SpectrumAnnotation> aAnnotations, boolean annotateHighestPeak)
This method sets all the annotations on this instance.void
GraphicsPanel. setAnnotationsMirrored(List<SpectrumAnnotation> aAnnotations)
This method sets all the annotations for the mirrored spectra.void
GraphicsPanel. setAnnotationsMirrored(List<SpectrumAnnotation> aAnnotations, boolean annotateHighestPeak)
This method sets all the annotations for the mirrored spectra.