Uses of Class
com.compomics.util.parameters.identification.IdentificationParameters

Packages that use IdentificationParameters 
Package Description
com.compomics.cli.identification_parameters
Command line for the handling of identification parameters.
com.compomics.cli.peptide_mapper
Command line for PeptideMapper.
com.compomics.util.experiment.identification.features
Classes for the generation of identification features.
com.compomics.util.experiment.identification.filtering
Classes for the filtering of identification objects.
com.compomics.util.experiment.identification.identification_parameters
Parameters settings for the spectrum identification algorithms.
com.compomics.util.experiment.identification.modification.mapping
Mapping between search engine and Utilities modifications.
com.compomics.util.experiment.identification.peptide_inference
Classes related to peptide inference.
com.compomics.util.experiment.identification.protein_inference.fm_index
Protein sequence database indexing classes based on Burrows-Wheeler transform.
com.compomics.util.experiment.identification.psm_scoring
Main PSM scoring class.
com.compomics.util.experiment.io.identification.writers
Writer for identification results.
com.compomics.util.gui.parameters.identification
GUI classes for parameters, settings and preferences used for identification.
com.compomics.util.parameters.identification
Identification parameters.