Constant Field Values

Contents

com.compomics.*

  • com.compomics.software.autoupdater.MavenJarFile 
    Modifier and Type Constant Field Value
    public static final int CENATT 36
    public static final int CENATX 38
    public static final int CENCOM 32
    public static final int CENCRC 16
    public static final int CENDSK 34
    public static final int CENEXT 30
    public static final int CENFLG 8
    public static final int CENHDR 46
    public static final int CENHOW 10
    public static final int CENLEN 24
    public static final int CENNAM 28
    public static final int CENOFF 42
    public static final long CENSIG 33639248L
    public static final int CENSIZ 20
    public static final int CENTIM 12
    public static final int CENVEM 4
    public static final int CENVER 6
    public static final int ENDCOM 20
    public static final int ENDHDR 22
    public static final int ENDOFF 16
    public static final long ENDSIG 101010256L
    public static final int ENDSIZ 12
    public static final int ENDSUB 8
    public static final int ENDTOT 10
    public static final int EXTCRC 4
    public static final int EXTHDR 16
    public static final int EXTLEN 12
    public static final long EXTSIG 134695760L
    public static final int EXTSIZ 8
    public static final int LOCCRC 14
    public static final int LOCEXT 28
    public static final int LOCFLG 6
    public static final int LOCHDR 30
    public static final int LOCHOW 8
    public static final int LOCLEN 22
    public static final int LOCNAM 26
    public static final long LOCSIG 67324752L
    public static final int LOCSIZ 18
    public static final int LOCTIM 10
    public static final int LOCVER 4
  • com.compomics.util.experiment.Constants 
    Modifier and Type Constant Field Value
    public static final double AMU_NO_EXP 1.660538921
    public static final double AVOGADRO_NO_EXP 6.02214129
  • com.compomics.util.experiment.biology.genes.ensembl.GeneMapping 
    Modifier and Type Constant Field Value
    public static final String SEPARATOR "\t"
  • com.compomics.util.experiment.biology.genes.go.GoDomains 
    Modifier and Type Constant Field Value
    public static final String SEPARATOR "\t"
  • com.compomics.util.experiment.biology.genes.go.GoMapping 
    Modifier and Type Constant Field Value
    public static final String SEPARATOR "\t"
  • com.compomics.util.experiment.biology.taxonomy.mappings.BiomartMapping 
    Modifier and Type Constant Field Value
    public static final String SEPARATOR "\t"
  • com.compomics.util.experiment.biology.taxonomy.mappings.EnsemblGenomesSpecies 
    Modifier and Type Constant Field Value
    public static final String SEPARATOR "\t"
  • com.compomics.util.experiment.biology.taxonomy.mappings.EnsemblSpecies 
    Modifier and Type Constant Field Value
    public static final String SEPARATOR "\",\""
  • com.compomics.util.experiment.biology.taxonomy.mappings.UniprotTaxonomy 
    Modifier and Type Constant Field Value
    public static final String SEPARATOR "\t"
  • com.compomics.util.experiment.identification.filtering.MatchFilter 
    Modifier and Type Constant Field Value
    public static final String MANUAL_SELECTION "manual selection"
  • com.compomics.util.experiment.identification.modification.scores.PhosphoRS 
    Modifier and Type Constant Field Value
    public static final int MAX_DEPTH 8
    public static final int MIN_DEPTH 2
    public static final double WINDOW_SIZE 100.0
  • com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.FeaturesMap 
    Modifier and Type Constant Field Value
    public static final int currentVersion 0
  • com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.AAIdentityFeatureAbsolute 
    Modifier and Type Constant Field Value
    public static final int index 9
  • com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.AAIdentityFeatureRelative 
    Modifier and Type Constant Field Value
    public static final int index 10
  • com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.AAPropertyFeatureAbsolute 
    Modifier and Type Constant Field Value
    public static final int index 6
  • com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.AAPropertyFeatureRelative 
    Modifier and Type Constant Field Value
    public static final int index 7
  • com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.AAPropertyRelationshipFeature 
    Modifier and Type Constant Field Value
    public static final int index 8
  • com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.ComplementaryIonAminoAcidFeature 
    Modifier and Type Constant Field Value
    public static final int index 5
  • com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.ComplementaryIonFeature 
    Modifier and Type Constant Field Value
    public static final int index 3
  • com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.ForwardIonAminoAcidFeature 
    Modifier and Type Constant Field Value
    public static final int index 4
  • com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.ForwardIonFeature 
    Modifier and Type Constant Field Value
    public static final int index 2
  • com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.ModificationFeature 
    Modifier and Type Constant Field Value
    public static final int index 11
  • com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.PeptideAminoAcidFeature 
    Modifier and Type Constant Field Value
    public static final int index 1
  • com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.PeptideFeature 
    Modifier and Type Constant Field Value
    public static final int index 0
  • com.compomics.util.experiment.identification.spectrum_annotation.SpectrumAnnotator 
    Modifier and Type Constant Field Value
    protected static final boolean SUBTRACT_ISOTOPE false
  • com.compomics.util.experiment.io.biology.protein.iterators.FastaIterator 
    Modifier and Type Constant Field Value
    public static final char forbiddenCharacter 42
  • com.compomics.util.io.compression.GzUtils 
    Modifier and Type Constant Field Value
    public static final int BUFFER_LENGTH 1024
    public static final String GZ_EXTENSION ".gz"
  • com.compomics.util.io.compression.TarUtils 
    Modifier and Type Constant Field Value
    public static final int BUFFER_SIZE 1024
  • com.compomics.util.io.compression.ZipUtils 
    Modifier and Type Constant Field Value
    public static final int BUFFER_SIZE 1024
  • com.compomics.util.io.ftp.FTP 
    Modifier and Type Constant Field Value
    public static final int FTP_PORT 21