Uses of Interface
com.compomics.util.experiment.identification.protein_inference.FastaMapper
Package | Description |
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com.compomics.cli.peptide_mapper |
Command line for PeptideMapper.
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com.compomics.util.experiment.identification.protein_inference.fm_index |
Protein sequence database indexing classes based on Burrows-Wheeler transform.
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Uses of FastaMapper in com.compomics.cli.peptide_mapper
Methods in com.compomics.cli.peptide_mapper with parameters of type FastaMapper Modifier and Type Method Description String
MappingWorker. flanking(PeptideProteinMapping peptideProteinMapping, FastaMapper peptideMapper)
Constructors in com.compomics.cli.peptide_mapper with parameters of type FastaMapper Constructor Description MappingWorker(WaitingHandlerCLIImpl waitingHandlerCLIImpl, FastaMapper peptideMapper, IdentificationParameters identificationParameters, BufferedReader br, PrintWriter writer, boolean peptideMapping)
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Uses of FastaMapper in com.compomics.util.experiment.identification.protein_inference.fm_index
Classes in com.compomics.util.experiment.identification.protein_inference.fm_index that implement FastaMapper Modifier and Type Class Description class
FMIndex
The FM index.