Uses of Package
com.compomics.util.parameters.identification.tool_specific
Package | Description |
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com.compomics.util.experiment.io.identification.idfilereaders |
Experiment classes related to reading search engine files.
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com.compomics.util.gui.parameters.identification.algorithm |
Search algorithm settings dialogs.
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com.compomics.util.parameters.identification.tool_specific |
Parameters settings for the search algorithms.
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Classes in com.compomics.util.parameters.identification.tool_specific used by com.compomics.util.experiment.io.identification.idfilereaders Class Description PepnovoParameters PepNovo specific parameters. -
Classes in com.compomics.util.parameters.identification.tool_specific used by com.compomics.util.gui.parameters.identification.algorithm Class Description AndromedaParameters The Andromeda specific parameters.CometParameters The Comet specific parameters.DirecTagParameters The DirecTag specific parameters.MetaMorpheusParameters The MetaMorpheus specific parameters.MsAmandaParameters The MS Amanda specific parameters.MsgfParameters The MS-GF+ specific parameters.MyriMatchParameters The MyriMatch specific parameters.NovorParameters Novor specific parameters.OmssaParameters The OMSSA specific parameters.PepnovoParameters PepNovo specific parameters.PNovoParameters pNovo specific parameters.TideParameters The Tide specific parameters.XtandemParameters The X!Tandem specific parameters. -
Classes in com.compomics.util.parameters.identification.tool_specific used by com.compomics.util.parameters.identification.tool_specific Class Description AndromedaParameters.AndromedaDecoyMode The available decoy modes.CometParameters.CometOutputFormat The available output formats.MetaMorpheusParameters.MetaMorpheusDecoyType The available decoy types.MetaMorpheusParameters.MetaMorpheusDissociationType The available dissociation types.MetaMorpheusParameters.MetaMorpheusFragmentationTerminusType The available fragmentation terminus types.MetaMorpheusParameters.MetaMorpheusInitiatorMethionineBehaviorType The available initiator methionine behavior types.MetaMorpheusParameters.MetaMorpheusMassDiffAcceptorType The available mass difference acceptor types.MetaMorpheusParameters.MetaMorpheusSearchType The available search types.MetaMorpheusParameters.MetaMorpheusToleranceType The available decoy types.