Class ReporterMethod
java.lang.Object
com.compomics.util.experiment.quantification.reporterion.ReporterMethod
public class ReporterMethod extends Object
This class contains information relative to a reporter quantification method.
- Author:
- Marc Vaudel
-
Constructor Summary
Constructors Constructor Description ReporterMethod()
Empty default constructorReporterMethod(String name, ArrayList<Reagent> reagents)
Constructor for a reporter method. -
Method Summary
Modifier and Type Method Description String
getName()
Returns the name of the method.Reagent
getReagent(String reagentName)
Returns the reagent of the given name, null if not found.Set<String>
getReagentNames()
Returns the reagents available in this method.ArrayList<String>
getReagentsSortedByMass()
Returns the list of reagents sorted by ascending mass.ReporterIon
getReporterIon(String reporterIonName)
Returns the reporter ion of the given name, null if not found.Set<String>
getReporterIonNames()
Returns a list containing the names of the reporter ions.
-
Constructor Details
-
ReporterMethod
public ReporterMethod()Empty default constructor -
ReporterMethod
Constructor for a reporter method.- Parameters:
name
- the name of the methodreagents
- list of reagents
-
-
Method Details
-
getReporterIonNames
Returns a list containing the names of the reporter ions.- Returns:
- a list containing the names of the reporter ions
-
getReporterIon
Returns the reporter ion of the given name, null if not found.- Parameters:
reporterIonName
- the name of the reporter ion- Returns:
- the reporter ion of interest
-
getReagentNames
Returns the reagents available in this method.- Returns:
- the reagents available in this method
-
getReagentsSortedByMass
Returns the list of reagents sorted by ascending mass.- Returns:
- the list of reagents sorted by ascending mass
-
getReagent
Returns the reagent of the given name, null if not found.- Parameters:
reagentName
- the reagent name- Returns:
- the reagent of interest
-
getName
Returns the name of the method.- Returns:
- the name of the method
-