Package com.compomics.util.io
Class PklFile
java.lang.Object
com.compomics.util.io.PklFile
public class PklFile extends Object
Contains information about the contents of one PKL file.
- Author:
- Harald Barsnes
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Constructor Summary
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Method Summary
Modifier and Type Method Description String
getFileName()
double[]
getIntensityValues()
double[]
getMzValues()
int
getPrecurorCharge()
double
getPrecursorIntensity()
double
getPrecursorMz()
String
getSpectrumFileId()
void
setFileName(String fileName)
void
setIntensityValues(double[] intensityValues)
void
setMzValues(double[] mzValues)
void
setPrecurorCharge(int precurorCharge)
void
setPrecursorIntensity(double precursorIntensity)
void
setPrecursorMz(double precursorMz)
void
setSpectrumFileId(String spectrumFileId)
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Constructor Details
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PklFile
public PklFile()Empty default constructor -
PklFile
Parse a PKL file and store the details in the PKLFile object.- Parameters:
pklFile
- the file to parse- Throws:
IOException
- if an IOException occurs
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Method Details
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getPrecurorCharge
public int getPrecurorCharge()- Returns:
- the precurorCharge
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setPrecurorCharge
public void setPrecurorCharge(int precurorCharge)- Parameters:
precurorCharge
- the precurorCharge to set
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getPrecursorMz
public double getPrecursorMz()- Returns:
- the precursorMz
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setPrecursorMz
public void setPrecursorMz(double precursorMz)- Parameters:
precursorMz
- the precursorMz to set
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getPrecursorIntensity
public double getPrecursorIntensity()- Returns:
- the precursorIntensity
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setPrecursorIntensity
public void setPrecursorIntensity(double precursorIntensity)- Parameters:
precursorIntensity
- the precursorIntensity to set
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getMzValues
public double[] getMzValues()- Returns:
- the mzValues
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setMzValues
public void setMzValues(double[] mzValues)- Parameters:
mzValues
- the mzValues to set
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getIntensityValues
public double[] getIntensityValues()- Returns:
- the intensityValues
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setIntensityValues
public void setIntensityValues(double[] intensityValues)- Parameters:
intensityValues
- the intensityValues to set
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getFileName
- Returns:
- the fileName
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setFileName
- Parameters:
fileName
- the fileName to set
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getSpectrumFileId
- Returns:
- the spectrumFileId
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setSpectrumFileId
- Parameters:
spectrumFileId
- the spectrumFileId to set
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