Uses of Class
com.compomics.util.experiment.filtering.FilterItemComparator
Package | Description |
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com.compomics.util.experiment.filtering |
Filtering classes.
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com.compomics.util.experiment.identification.filtering |
Classes for the filtering of identification objects.
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Uses of FilterItemComparator in com.compomics.util.experiment.filtering
Methods in com.compomics.util.experiment.filtering that return FilterItemComparator Modifier and Type Method Description static FilterItemComparator
FilterItemComparator. valueOf(String name)
Returns the enum constant of this type with the specified name.static FilterItemComparator[]
FilterItemComparator. values()
Returns an array containing the constants of this enum type, in the order they are declared. -
Uses of FilterItemComparator in com.compomics.util.experiment.identification.filtering
Fields in com.compomics.util.experiment.identification.filtering with type parameters of type FilterItemComparator Modifier and Type Field Description protected HashMap<String,FilterItemComparator>
MatchFilter. comparatorsMap
Map of the comparators to use.Methods in com.compomics.util.experiment.identification.filtering that return FilterItemComparator Modifier and Type Method Description FilterItemComparator
MatchFilter. getComparatorForItem(String itemName)
Returns the comparator set for a given filtering item.Methods in com.compomics.util.experiment.identification.filtering with parameters of type FilterItemComparator Modifier and Type Method Description boolean
AssumptionFilter. isValidated(String itemName, FilterItemComparator filterItemComparator, Object value, long spectrumMatchKey, Identification identification, GeneMaps geneMaps, IdentificationFeaturesGenerator identificationFeaturesGenerator, IdentificationParameters identificationParameters, SequenceProvider sequenceProvider, ProteinDetailsProvider proteinDetailsProvider, SpectrumProvider spectrumProvider)
boolean
AssumptionFilter. isValidated(String itemName, FilterItemComparator filterItemComparator, Object value, long spectrumMatchKey, String spectrumFile, String spectrumTitle, PeptideAssumption peptideAssumption, Identification identification, SequenceProvider sequenceProvider, SpectrumProvider spectrumProvider, IdentificationFeaturesGenerator identificationFeaturesGenerator, IdentificationParameters identificationParameters)
Indicates whether the match designated by the match key validates the given item using the given comparator and value threshold.abstract boolean
MatchFilter. isValidated(String itemName, FilterItemComparator filterItemComparator, Object value, long matchKey, Identification identification, GeneMaps geneMaps, IdentificationFeaturesGenerator identificationFeaturesGenerator, IdentificationParameters identificationParameters, SequenceProvider sequenceProvider, ProteinDetailsProvider proteinDetailsProvider, SpectrumProvider spectrumProvider)
Indicates whether the match designated by the match key validates the given item using the given comparator and value threshold.boolean
PeptideFilter. isValidated(String itemName, FilterItemComparator filterItemComparator, Object value, long matchKey, Identification identification, GeneMaps geneMaps, IdentificationFeaturesGenerator identificationFeaturesGenerator, IdentificationParameters identificationParameters, SequenceProvider sequenceProvider, ProteinDetailsProvider proteinDetailsProvider, SpectrumProvider spectrumProvider)
boolean
ProteinFilter. isValidated(String itemName, FilterItemComparator filterItemComparator, Object value, long matchKey, Identification identification, GeneMaps geneMaps, IdentificationFeaturesGenerator identificationFeaturesGenerator, IdentificationParameters identificationParameters, SequenceProvider sequenceProvider, ProteinDetailsProvider proteinDetailsProvider, SpectrumProvider spectrumProvider)
boolean
PsmFilter. isValidated(String itemName, FilterItemComparator filterItemComparator, Object value, long matchKey, Identification identification, GeneMaps geneMaps, IdentificationFeaturesGenerator identificationFeaturesGenerator, IdentificationParameters identificationParameters, SequenceProvider sequenceProvider, ProteinDetailsProvider proteinDetailsProvider, SpectrumProvider spectrumProvider)
void
MatchFilter. setComparatorForItem(String itemName, FilterItemComparator filterItemComparator)
Sets the comparator for a given item.void
MatchFilter. setFilterItem(String itemName, FilterItemComparator filterItemComparator, Object value)
Sets an item to the filter.