Uses of Class
com.compomics.util.experiment.identification.filtering.PeptideAssumptionFilter
Package | Description |
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com.compomics.util.experiment.identification.filtering |
Classes for the filtering of identification objects.
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com.compomics.util.gui.parameters.identification.advanced |
Dialogs for advanced identification parameters.
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com.compomics.util.parameters.identification |
Identification parameters.
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Uses of PeptideAssumptionFilter in com.compomics.util.experiment.identification.filtering
Methods in com.compomics.util.experiment.identification.filtering with parameters of type PeptideAssumptionFilter Modifier and Type Method Description boolean
PeptideAssumptionFilter. isSameAs(PeptideAssumptionFilter anotherFilter)
Indicates whether this filter is the same as another one. -
Uses of PeptideAssumptionFilter in com.compomics.util.gui.parameters.identification.advanced
Methods in com.compomics.util.gui.parameters.identification.advanced that return PeptideAssumptionFilter Modifier and Type Method Description PeptideAssumptionFilter
MatchesImportParametersDialog. getFilter()
Returns the id filter as set by the user.Constructors in com.compomics.util.gui.parameters.identification.advanced with parameters of type PeptideAssumptionFilter Constructor Description MatchesImportParametersDialog(Dialog owner, Frame parentFrame, PeptideAssumptionFilter idFilter, boolean editable)
Creates a new ImportSettingsDialog with a dialog as owner.MatchesImportParametersDialog(Frame parentFrame, PeptideAssumptionFilter idFilter, boolean editable)
Creates a new ImportSettingsDialog with a frame as owner. -
Uses of PeptideAssumptionFilter in com.compomics.util.parameters.identification
Methods in com.compomics.util.parameters.identification that return PeptideAssumptionFilter Modifier and Type Method Description PeptideAssumptionFilter
IdentificationParameters. getPeptideAssumptionFilter()
Returns the filter used when importing PSMs.Methods in com.compomics.util.parameters.identification with parameters of type PeptideAssumptionFilter Modifier and Type Method Description void
IdentificationParameters. setPeptideAssumptionFilter(PeptideAssumptionFilter peptideAssumptionFilter)
Sets the filter used when importing PSMs.Constructors in com.compomics.util.parameters.identification with parameters of type PeptideAssumptionFilter Constructor Description IdentificationParameters(String name, String description, SearchParameters searchParameters, AnnotationParameters annotationParameters, SequenceMatchingParameters sequenceMatchingParameters, PeptideVariantsParameters peptideVariantsParameters, GeneParameters geneParameters, PsmScoringParameters psmScoringParameters, PeptideAssumptionFilter peptideAssumptionFilter, ModificationLocalizationParameters ModificationLocalizationParameters, ProteinInferenceParameters proteinInferenceParameters, IdMatchValidationParameters idValidationParameters, FractionParameters fractionParameters, FastaParameters fastaParameters)
Constructor.