Class Tyrosine
java.lang.Object
com.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.experiment.biology.aminoacids.AminoAcid
com.compomics.util.experiment.biology.aminoacids.impl.Tyrosine
- All Implemented Interfaces:
Serializable
public class Tyrosine extends AminoAcid
Tyrosine.
- Author:
- Marc Vaudel
- See Also:
- Serialized Form
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Nested Class Summary
Nested classes/interfaces inherited from class com.compomics.util.experiment.biology.aminoacids.AminoAcid
AminoAcid.Property
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Field Summary
Fields inherited from class com.compomics.util.experiment.biology.aminoacids.AminoAcid
A, AMINO_ACID_STRINGS, aminoAcidCombinations, B, C, D, E, F, G, H, I, J, K, L, M, monoisotopicAtomChain, N, name, O, P, Q, R, S, singleLetterCode, standardGeneticCode, subAminoAcidsWithCombination, subAminoAcidsWithoutCombination, T, threeLetterCode, U, V, W, X, Y, Z
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Constructor Summary
Constructors Constructor Description Tyrosine()
Constructor. -
Method Summary
Modifier and Type Method Description double
getBasicity()
Returns the basicity according to PMID 14730315.double
getHelicity()
Returns the helicity according to PMID 14730315.double
getHydrophobicity()
Returns the hydrophobicity according to PMID 14730315.double
getPI()
Returns the pI.double
getPK1()
Returns the pK1.double
getPK2()
Returns the pK2.double
getPKa()
Returns the pKa.int
getVanDerWaalsVolume()
Returns the van der Waals volume in Å3.boolean
iscombination()
Indicates whether the amino acid object refers to a combination of amino acids like B, J, Z or X.Methods inherited from class com.compomics.util.experiment.biology.aminoacids.AminoAcid
equals, getAminoAcid, getAminoAcid, getAminoAcidFromGeneticCode, getAminoAcids, getAminoAcidsList, getCombinations, getIndex, getMatchingAminoAcid, getMatchingSequence, getMonoisotopicAtomChain, getMonoisotopicMass, getNUnique, getProperty, getSingleLetterCodeAsChar, getStandardGeneticCode, getStandardGeneticCodeForCombination, getSubAminoAcids, getSubAminoAcids, getUniqueAminoAcids, getUniqueIndex, isAa, isAa, isUniqueAa
Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject
addUrParam, asLong, clearParametersMap, getId, getUrParam, getUrParams, removeUrParam, setId, setUrParams
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Constructor Details
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Tyrosine
public Tyrosine()Constructor.
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Method Details
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iscombination
public boolean iscombination()Description copied from class:AminoAcid
Indicates whether the amino acid object refers to a combination of amino acids like B, J, Z or X.- Specified by:
iscombination
in classAminoAcid
- Returns:
- an boolean indicating whether the amino acid object refers to a combination of amino acids like B, J, Z or X
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getHydrophobicity
public double getHydrophobicity()Description copied from class:AminoAcid
Returns the hydrophobicity according to PMID 14730315.- Specified by:
getHydrophobicity
in classAminoAcid
- Returns:
- the hydrophobicity
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getHelicity
public double getHelicity()Description copied from class:AminoAcid
Returns the helicity according to PMID 14730315.- Specified by:
getHelicity
in classAminoAcid
- Returns:
- the helicity
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getBasicity
public double getBasicity()Description copied from class:AminoAcid
Returns the basicity according to PMID 14730315.- Specified by:
getBasicity
in classAminoAcid
- Returns:
- the basicity
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getPI
public double getPI()Description copied from class:AminoAcid
Returns the pI. -
getPK1
public double getPK1()Description copied from class:AminoAcid
Returns the pK1. -
getPK2
public double getPK2()Description copied from class:AminoAcid
Returns the pK2. -
getPKa
public double getPKa()Description copied from class:AminoAcid
Returns the pKa. 0.0 if none. -
getVanDerWaalsVolume
public int getVanDerWaalsVolume()Description copied from class:AminoAcid
Returns the van der Waals volume in Å3.- Specified by:
getVanDerWaalsVolume
in classAminoAcid
- Returns:
- the van der Waals volume
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