Class AlignmentBlock
java.lang.Object
com.compomics.util.pdbfinder.das.readers.AlignmentBlock
public class AlignmentBlock extends Object
AlignmentBlock.
- Author:
- Niklaas Colaert
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Constructor Summary
Constructors Constructor Description AlignmentBlock()
Empty default constructorAlignmentBlock(int aPdbStart, int aPdbEnd, int aSpStart, int aSpEnd, String aPdbAccession, String aSpAccession)
Constructor. -
Method Summary
Modifier and Type Method Description int
getDifference()
Returns the difference.String
getPdbAccession()
Returns the PDB accession.int
getPdbEnd()
Returns the PDB end.int
getPdbStart()
Returns the PDB start.String
getSpAccession()
Returns the SP accession.int
getSpEnd()
Returns the SP end.int
getSpStart()
Returns the SP start.
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Constructor Details
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AlignmentBlock
public AlignmentBlock()Empty default constructor -
AlignmentBlock
public AlignmentBlock(int aPdbStart, int aPdbEnd, int aSpStart, int aSpEnd, String aPdbAccession, String aSpAccession)Constructor.- Parameters:
aPdbStart
- the PDB start indexaPdbEnd
- the PDB end indexaSpStart
- the UniProt start indexaSpEnd
- the UniProt end indexaPdbAccession
- the PDB accessionaSpAccession
- the UniProt accession
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Method Details
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getPdbStart
public int getPdbStart()Returns the PDB start.- Returns:
- the PDB start
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getPdbEnd
public int getPdbEnd()Returns the PDB end.- Returns:
- the PDB end
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getSpStart
public int getSpStart()Returns the SP start.- Returns:
- the SP start
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getSpEnd
public int getSpEnd()Returns the SP end.- Returns:
- the SP end
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getPdbAccession
Returns the PDB accession.- Returns:
- the PDB accession
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getSpAccession
Returns the SP accession.- Returns:
- the SP accession
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getDifference
public int getDifference()Returns the difference.- Returns:
- the difference
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