Package com.compomics.util.experiment.identification.protein_sequences.digestion

This package contains classes used to digest protein sequences into peptides.
  • Interface Summary 
    Interface Description
    SequenceIterator
    Interface for an iterator returning peptides along a protein sequence.
  • Class Summary 
    Class Description
    ExtendedPeptide
    This class packages together a peptide, its fixed modifications and its position on the protein.
    IteratorFactory
    The iterator goes through a sequence and lists possible peptides with their fixed modifications.
    PeptideDraft
    Draft of a peptide used during protein sequence digestion.
    ProteinIteratorUtils
    This class contains utilities used during the iteration of protein sequences.