Class FractionParameters
java.lang.Object
com.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.parameters.identification.advanced.FractionParameters
- All Implemented Interfaces:
Serializable
public class FractionParameters extends ExperimentObject
Settings for the handling of fractions.
- Author:
- Marc Vaudel, Harald Barsnes
- See Also:
- Serialized Form
-
Field Summary
-
Constructor Summary
Constructors Constructor Description FractionParameters()
Constructor. -
Method Summary
Modifier and Type Method Description HashMap<String,no.uib.jsparklines.data.XYDataPoint>
getFractionMolecularWeightRanges()
Returns the user provided molecular weight ranges for the fractions.Double
getProteinConfidenceMwPlots()
Returns the protein confidence for inclusion in MW plots.String
getShortDescription()
Returns a short description of the parameters.boolean
isSameAs(FractionParameters fractionSettings)
Returns a boolean indicating whether other given settings are the same as these.void
setFractionMolecularWeightRanges(HashMap<String,no.uib.jsparklines.data.XYDataPoint> fractionMolecularWeightRanges)
Set the user provided molecular weight ranges for the fractions.void
setProteinConfidenceMwPlots(Double proteinConfidenceMwPlots)
Sets the protein confidence for inclusion in MW plots.Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject
addUrParam, asLong, clearParametersMap, getId, getUrParam, getUrParams, removeUrParam, setId, setUrParams
-
Constructor Details
-
FractionParameters
public FractionParameters()Constructor.
-
-
Method Details
-
getProteinConfidenceMwPlots
Returns the protein confidence for inclusion in MW plots.- Returns:
- the protein confidence for inclusion in MW plots
-
setProteinConfidenceMwPlots
Sets the protein confidence for inclusion in MW plots.- Parameters:
proteinConfidenceMwPlots
- the protein confidence for inclusion in MW plots
-
isSameAs
Returns a boolean indicating whether other given settings are the same as these.- Parameters:
fractionSettings
- other settings to compare to- Returns:
- a boolean indicating whether other given settings are the same as these
-
getFractionMolecularWeightRanges
Returns the user provided molecular weight ranges for the fractions. The key is the fraction file path.- Returns:
- the user provided molecular weight ranges of the fractions
-
setFractionMolecularWeightRanges
public void setFractionMolecularWeightRanges(HashMap<String,no.uib.jsparklines.data.XYDataPoint> fractionMolecularWeightRanges)Set the user provided molecular weight ranges for the fractions. The key is the fraction file name.- Parameters:
fractionMolecularWeightRanges
- the fractionMolecularWeightRanges to set
-
getShortDescription
Returns a short description of the parameters.- Returns:
- a short description of the parameters
-