Package | Description |
---|---|
com.compomics.util.io.export |
Classes related to exporting reports.
|
com.compomics.util.io.export.features |
Classes related to exporting Reporter features.
|
com.compomics.util.io.export.features.peptideshaker |
Package containing classes listing the possible export features for PeptideShaker.
|
com.compomics.util.io.export.features.reporter |
Package containing classes listing the possible export features for Reporter.
|
Modifier and Type | Method and Description |
---|---|
ArrayList<ExportFeature> |
ExportFeature.getExportFeatures(boolean includeSubFeatures)
Returns a list of all implemented export features.
|
ArrayList<ExportFeature> |
ExportScheme.getExportFeatures(String section)
Returns the export features to be included in the given section.
|
ArrayList<ExportFeature> |
ExportFactory.getExportFeatures(String sectionName,
boolean includeSubFeatures)
Returns the export features implemented for the given section.
|
Modifier and Type | Method and Description |
---|---|
void |
ExportScheme.addExportFeature(String section,
ExportFeature exportFeature)
Adds an export feature to the desired section.
|
Modifier and Type | Method and Description |
---|---|
void |
ExportScheme.setExportFeatures(String section,
ArrayList<ExportFeature> exportFeatures)
Sets the export features of a given section.
|
Constructor and Description |
---|
ExportScheme(String name,
boolean editable,
ArrayList<String> sectionList,
HashMap<String,ArrayList<ExportFeature>> exportFeatures,
String separator,
boolean indexes,
boolean header,
int separationLines,
boolean includeSectionTitles,
boolean validatedOnly,
boolean includeDecoys)
Constructor.
|
ExportScheme(String name,
boolean editable,
HashMap<String,ArrayList<ExportFeature>> exportFeatures,
String separator,
boolean indexes,
boolean header,
int separationLines,
boolean includeSectionTitles,
boolean validatedOnly,
boolean includeDecoys)
Constructor.
|
ExportScheme(String name,
boolean editable,
HashMap<String,ArrayList<ExportFeature>> exportFeatures,
String separator,
boolean indexes,
boolean header,
int separationLines,
boolean includeSectionTitles,
boolean validatedOnly,
boolean includeDecoys,
String mainTitle)
Constructor.
|
Modifier and Type | Interface and Description |
---|---|
interface |
ReporterExportFeature
Reporter extension of the utilities export features.
|
Modifier and Type | Class and Description |
---|---|
class |
PsAnnotationFeature
This class lists the annotation export features.
|
class |
PsFragmentFeature
This class lists the fragment identification features.
|
class |
PsIdentificationAlgorithmMatchesFeature
This class lists the Algorithm identification features.
|
class |
PsInputFilterFeature
This enum lists the export features related to the import features.
|
class |
PsPeptideFeature
This class lists the peptide identification features.
|
class |
PsProjectFeature
This class lists the PSM identification features.
|
class |
PsProteinFeature
This class lists the protein identification features.
|
class |
PsPsmFeature
This class lists the PSM identification features.
|
class |
PsPtmScoringFeature
This enum groups the export features related to PTM scoring.
|
class |
PsSearchFeature
This class lists the export features linked to the spectrum identification.
|
class |
PsSpectrumCountingFeature
This class lists all the export features related to the spectrum counting.
|
class |
PsValidationFeature
This enum lists the export features linked to the validation process.
|
Modifier and Type | Method and Description |
---|---|
ArrayList<ExportFeature> |
PsValidationFeature.getExportFeatures(boolean includeSubFeatures) |
ArrayList<ExportFeature> |
PsSpectrumCountingFeature.getExportFeatures(boolean includeSubFeatures) |
ArrayList<ExportFeature> |
PsSearchFeature.getExportFeatures(boolean includeSubFeatures) |
ArrayList<ExportFeature> |
PsPtmScoringFeature.getExportFeatures(boolean includeSubFeatures) |
ArrayList<ExportFeature> |
PsPsmFeature.getExportFeatures(boolean includeSubFeatures) |
ArrayList<ExportFeature> |
PsProteinFeature.getExportFeatures(boolean includeSubFeatures) |
ArrayList<ExportFeature> |
PsProjectFeature.getExportFeatures(boolean includeSubFeatures) |
ArrayList<ExportFeature> |
PsPeptideFeature.getExportFeatures(boolean includeSubFeatures) |
ArrayList<ExportFeature> |
PsInputFilterFeature.getExportFeatures(boolean includeSubFeatures) |
ArrayList<ExportFeature> |
PsIdentificationAlgorithmMatchesFeature.getExportFeatures(boolean includeSubFeatures) |
ArrayList<ExportFeature> |
PsFragmentFeature.getExportFeatures(boolean includeSubFeatures) |
ArrayList<ExportFeature> |
PsAnnotationFeature.getExportFeatures(boolean includeSubFeatures) |
Modifier and Type | Class and Description |
---|---|
class |
ReporterPeptideFeature
This enum lists all the peptide export features available from reporter
complementarily to the ones available in PeptideShaker.
|
class |
ReporterProteinFeatures
This enum lists all the protein export features available from reporter
complementarily to the ones available in PeptideShaker.
|
class |
ReporterPsmFeatures
This enum lists all the PSM export features available from reporter
complementarily to the ones available in PeptideShaker.
|
Modifier and Type | Method and Description |
---|---|
ArrayList<ExportFeature> |
ReporterPsmFeatures.getExportFeatures(boolean includeSubFeatures) |
ArrayList<ExportFeature> |
ReporterProteinFeatures.getExportFeatures(boolean includeSubFeatures) |
ArrayList<ExportFeature> |
ReporterPeptideFeature.getExportFeatures(boolean includeSubFeatures) |
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