Package | Description |
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com.compomics.util.experiment.identification.psm_scoring |
Main PSM scoring class.
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Modifier and Type | Method and Description |
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static PsmScore |
PsmScore.getScore(int scoreIndex)
Returns the PSM score of the given index.
|
static PsmScore |
PsmScore.getScore(String scoreName)
Returns the PSM score of the given name.
|
static PsmScore |
PsmScore.valueOf(String name)
Returns the enum constant of this type with the specified name.
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static PsmScore[] |
PsmScore.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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Modifier and Type | Method and Description |
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double |
PsmScoresEstimator.getScore(Peptide peptide,
int peptideCharge,
String spectrumFile,
String spectrumTitle,
Spectrum spectrum,
IdentificationParameters identificationParameters,
SpecificAnnotationParameters specificAnnotationParameters,
ModificationParameters modificationParameters,
SequenceProvider sequenceProvider,
SequenceMatchingParameters modificationSequenceMatchingParameters,
PeptideSpectrumAnnotator peptideSpectrumAnnotator,
PsmScore psmScore)
Scores the match between the given peptide and spectrum using the given
score.
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