Package | Description |
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com.compomics.util.experiment.identification.peptide_shaker |
Experiment classes used in PeptideShaker calculations.
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com.compomics.util.experiment.personalization |
Experiment customization classes.
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com.compomics.util.experiment.refinement_parameters |
Experiment classes related to specific parametrization of experiment objects.
|
Modifier and Type | Class and Description |
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class |
PSModificationScores
This class contains the scores for the locations of the possible
modifications.
|
class |
PSParameter
PeptideShaker compomics utilities experiment customizable parameter.
|
Modifier and Type | Method and Description |
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UrParameter |
ExperimentObject.getUrParam(UrParameter parameter)
Returns the refinement parameter of the same type than the one provided.
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Modifier and Type | Method and Description |
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HashMap<Long,UrParameter> |
ExperimentObject.getUrParams()
Returns the user parameters map.
|
Modifier and Type | Method and Description |
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void |
ExperimentObject.addUrParam(UrParameter parameter)
Adds a user refinement parameter.
|
UrParameter |
ExperimentObject.getUrParam(UrParameter parameter)
Returns the refinement parameter of the same type than the one provided.
|
Modifier and Type | Method and Description |
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void |
ExperimentObject.setUrParams(HashMap<Long,UrParameter> urParams)
Sets the user parameters map.
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Modifier and Type | Class and Description |
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class |
PepnovoAssumptionDetails
This class contains pepnovo assumption details which are not contained in the
tag assumption class which will be saved as additional parameter.
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