Package | Description |
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com.compomics.util.experiment.identification.spectrum_annotation |
Classes used for ms2 spectrum annotation.
|
com.compomics.util.experiment.mass_spectrometry.spectra |
Experiment classes related to spectra.
|
Modifier and Type | Method and Description |
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AnnotationParameters.IntensityThresholdType |
AnnotationParameters.getIntensityThresholdType()
Returns the intensity threshold type.
|
static AnnotationParameters.IntensityThresholdType |
AnnotationParameters.IntensityThresholdType.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static AnnotationParameters.IntensityThresholdType[] |
AnnotationParameters.IntensityThresholdType.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Modifier and Type | Method and Description |
---|---|
void |
AnnotationParameters.setIntensityThresholdType(AnnotationParameters.IntensityThresholdType intensityThresholdType)
Sets the intensity threshold type.
|
Modifier and Type | Method and Description |
---|---|
static double |
SpectrumUtil.getIntensityLimit(Spectrum spectrum,
AnnotationParameters.IntensityThresholdType intensityThresholdType,
double thresholdValue)
Returns the limit in intensity according to the given threshold.
|
static double[][] |
SpectrumUtil.getPeaksAboveIntensityThreshold(Spectrum spectrum,
AnnotationParameters.IntensityThresholdType intensityThresholdType,
double thresholdValue)
Returns the peaks above intensity threshold as an array of double (mz,
intensity).
|
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