public class GeneParameters extends ExperimentObject
NO_KEY
Constructor and Description |
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GeneParameters()
Create a new GenePreferences object.
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GeneParameters(GeneParameters genePreferences)
Creates new gene preferences based on a GenePreferences object.
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Modifier and Type | Method and Description |
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boolean |
equals(GeneParameters genePreferences)
Compares these preferences to other preferences.
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Boolean |
getAutoUpdate()
Indicates whether the gene mappings should be automatically updated.
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Integer |
getBackgroundSpecies()
Returns the taxon of the species selected as background species.
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String |
getShortDescription()
Returns a short description of the parameters.
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Boolean |
getUseGeneMapping()
Returns a boolean indicating whether gene mappings should be used.
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void |
setAutoUpdate(Boolean autoUpdate)
Sets whether the gene mappings should be automatically updated.
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void |
setBackgroundSpecies(Integer selectedBackgroundSpecies)
Sets the taxon of the species selected as background species.
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void |
setBackgroundSpeciesFromFastaSummary(FastaSummary fastaSummary)
Set the background species to the most common species in the FASTA file.
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void |
setUseGeneMapping(Boolean useGeneMapping)
Sets whether gene mappings should be used.
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addUrParam, asLong, clearParametersMap, getId, getUrParam, getUrParams, removeUrParam, setId, setUrParams
public GeneParameters()
public GeneParameters(GeneParameters genePreferences)
genePreferences
- the gene preferencespublic Boolean getUseGeneMapping()
public void setUseGeneMapping(Boolean useGeneMapping)
useGeneMapping
- a boolean indicating whether gene mappings should
be usedpublic Boolean getAutoUpdate()
public void setAutoUpdate(Boolean autoUpdate)
autoUpdate
- a boolean indicating whether the gene mappings should
be automatically updatedpublic boolean equals(GeneParameters genePreferences)
genePreferences
- other preferences to compare to.public Integer getBackgroundSpecies()
public void setBackgroundSpecies(Integer selectedBackgroundSpecies)
selectedBackgroundSpecies
- the taxon of the species selected as
background speciespublic void setBackgroundSpeciesFromFastaSummary(FastaSummary fastaSummary)
fastaSummary
- the FASTA summarypublic String getShortDescription()
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