public class J extends AminoAcid
AminoAcid.Property
A, AMINO_ACID_STRINGS, aminoAcidCombinations, B, C, D, E, F, G, H, I, J, K, L, M, monoisotopicAtomChain, N, name, O, P, Q, R, S, singleLetterCode, standardGeneticCode, subAminoAcidsWithCombination, subAminoAcidsWithoutCombination, T, threeLetterCode, U, V, W, X, Y, Z
NO_KEY
Constructor and Description |
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J()
Constructor.
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Modifier and Type | Method and Description |
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double |
getBasicity()
Returns the basicity according to PMID 14730315.
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double |
getHelicity()
Returns the helicity according to PMID 14730315.
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double |
getHydrophobicity()
Returns the hydrophobicity according to PMID 14730315.
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double |
getPI()
Returns the pI.
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double |
getPK1()
Returns the pK1.
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double |
getPK2()
Returns the pK2.
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double |
getPKa()
Returns the pKa.
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int |
getVanDerWaalsVolume()
Returns the van der Waals volume in Å3.
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boolean |
iscombination()
Indicates whether the amino acid object refers to a combination of amino
acids like B, J, Z or X.
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equals, getAminoAcid, getAminoAcid, getAminoAcidFromGeneticCode, getAminoAcids, getAminoAcidsList, getCombinations, getIndex, getMatchingAminoAcid, getMatchingSequence, getMonoisotopicAtomChain, getMonoisotopicMass, getNUnique, getProperty, getSingleLetterCodeAsChar, getStandardGeneticCode, getStandardGeneticCodeForCombination, getSubAminoAcids, getSubAminoAcids, getUniqueAminoAcids, getUniqueIndex, isAa, isAa, isUniqueAa
addUrParam, asLong, clearParametersMap, getId, getUrParam, getUrParams, removeUrParam, setId, setUrParams
public boolean iscombination()
AminoAcid
iscombination
in class AminoAcid
public double getHydrophobicity()
AminoAcid
getHydrophobicity
in class AminoAcid
public double getHelicity()
AminoAcid
getHelicity
in class AminoAcid
public double getBasicity()
AminoAcid
getBasicity
in class AminoAcid
public double getPI()
AminoAcid
public double getPK1()
AminoAcid
public double getPK2()
AminoAcid
public double getPKa()
AminoAcid
public int getVanDerWaalsVolume()
AminoAcid
getVanDerWaalsVolume
in class AminoAcid
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