Class Hierarchy
- java.lang.Object
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AAIdentityFeature (implements com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature)
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.AAIdentityFeatureAbsolute
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.AAIdentityFeatureRelative
- com.compomics.util.experiment.identification.protein_sequences.AaOccurrence
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AAPropertyFeature (implements com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature, com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.SingleAAPropertyFeature)
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.AAPropertyFeatureAbsolute
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.AAPropertyFeatureRelative
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.AAPropertyRelationshipFeature (implements com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature, com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.MultipleAAPropertyFeature)
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AASequenceFeature (implements com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature, com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.SingleAAPropertyFeature)
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.ComplementaryIonAminoAcidFeature
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.ForwardIonAminoAcidFeature
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.PeptideAminoAcidFeature
- com.compomics.util.protein.AASequenceImpl (implements com.compomics.util.interfaces.Sequence)
- com.compomics.cli.identification_parameters.AbstractIdentificationParametersCli (implements java.util.concurrent.Callable<V>)
- javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
- com.compomics.util.experiment.identification.protein_inference.fm_index.AccessionMetaData (implements java.io.Serializable)
- com.compomics.util.gui.renderers.AlignedTableCellRenderer (implements javax.swing.table.TableCellRenderer)
- com.compomics.util.pdbfinder.das.readers.AlignmentBlock
- com.compomics.util.experiment.identification.protein_sequences.AmbiguousSequenceIterator
- com.compomics.util.experiment.biology.variants.AminoAcidSubstitution
- com.compomics.util.experiment.io.identification.idfilereaders.AndromedaIdfileReader (implements com.compomics.util.experiment.io.identification.IdfileReader)
- com.compomics.util.experiment.io.mass_spectrometry.apl.AplFileWriter (implements java.lang.AutoCloseable)
- com.compomics.util.ArrayUtil
- com.compomics.util.examples.BareBonesBrowserLaunch
- com.compomics.util.math.BasicMathFunctions
- com.compomics.util.math.BigFunctions
- com.compomics.util.math.BigMathUtils
- com.compomics.util.BinaryArrayImpl
- com.compomics.util.math.statistics.linear_regression.filters.BinningFilter
- com.compomics.util.math.statistics.distributions.BinomialDistribution (implements com.compomics.util.math.statistics.Distribution)
- com.compomics.util.experiment.biology.taxonomy.mappings.BiomartMapping
- com.compomics.util.experiment.biology.ions.Charge
- com.compomics.software.log.CliLogger (implements java.lang.AutoCloseable)
- com.compomics.util.experiment.io.mass_spectrometry.cms.CmsFileIterator (implements com.compomics.util.experiment.io.mass_spectrometry.MsFileIterator)
- com.compomics.util.experiment.io.mass_spectrometry.cms.CmsFileReader (implements com.compomics.util.experiment.mass_spectrometry.SpectrumProvider)
- com.compomics.util.experiment.io.mass_spectrometry.cms.CmsFileUtils
- com.compomics.util.experiment.io.mass_spectrometry.cms.CmsFileWriter (implements java.lang.AutoCloseable)
- com.compomics.util.experiment.io.mass_spectrometry.cms.CmsFolder
- com.compomics.util.db.ColumnTypeConverter
- com.compomics.util.general.CommandLineParser
- com.compomics.software.cli.CommandLineUtils
- com.compomics.software.cli.CommandParameter
- com.compomics.software.autoupdater.CompareVersionNumbers (implements java.util.Comparator<T>)
- com.compomics.util.CompareVersionNumbers (implements java.util.Comparator<T>)
- com.compomics.software.CompomicsWrapper
- java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
- com.compomics.util.experiment.Constants
- com.compomics.util.db.components.Constructors
- com.compomics.util.experiment.io.identification.idfilereaders.CossIdfileReader (implements com.compomics.util.experiment.io.identification.IdfileReader)
- com.compomics.util.pdbfinder.das.readers.DasAlignment
- com.compomics.util.pdbfinder.das.readers.DasAnnotationServerAlingmentReader
- com.compomics.util.pdbfinder.das.readers.DasAnnotationServerResultReader
- com.compomics.util.pdbfinder.das.readers.DasFeature
- com.compomics.util.math.roc.DataRoc (implements com.compomics.util.math.statistics.ROC)
- com.compomics.util.db.DBAccessor
- com.compomics.util.db.DBAccessorGenerator
- com.compomics.util.db.DBMetaData
- com.compomics.util.db.object.DbMutex
- com.compomics.util.experiment.io.biology.protein.converters.DecoyConverter
- com.compomics.util.general.DefaultOutputLoggerImplementation (implements com.compomics.util.interfaces.Logger)
- com.compomics.util.gui.spectrum.DefaultSpectrumAnnotation (implements com.compomics.util.gui.interfaces.SpectrumAnnotation)
- com.compomics.util.io.export.styles.DefaultStyle (implements com.compomics.util.io.export.WorkbookStyle)
- com.compomics.util.db.components.DeleteableCode
- com.compomics.util.experiment.biology.variants.amino_acids.Deletion (implements com.compomics.util.experiment.biology.variants.Variant)
- com.compomics.util.experiment.io.identification.idfilereaders.DirecTagIdfileReader (implements com.compomics.util.experiment.io.identification.IdfileReader)
- com.compomics.util.math.roc.DistributionRoc (implements com.compomics.util.math.statistics.ROC)
- com.compomics.util.math.matrix.DoubleMatrix
- com.compomics.software.autoupdater.DownloadLatestZipFromRepo
- com.compomics.scripts_marc.Dummy
- com.compomics.util.experiment.io.parameters.DummyParameters (implements com.compomics.util.experiment.io.parameters.MarshallableParameter)
- com.compomics.util.waiting.Duration
- com.compomics.util.gui.utils.EmptyCollections
- com.compomics.util.experiment.biology.taxonomy.mappings.EnsemblGenomesSpecies
- com.compomics.util.experiment.biology.taxonomy.mappings.EnsemblSpecies
- com.compomics.util.experiment.biology.genes.ensembl.EnsemblVersion
- com.compomics.util.protein.Enzyme (implements java.lang.Cloneable)
- com.compomics.util.experiment.biology.enzymes.EnzymeFactory
- com.compomics.cli.enzymes.EnzymesCLI
- com.compomics.cli.enzymes.EnzymesCLIInputBean
- com.compomics.util.exceptions.ExceptionHandler
- com.compomics.util.experiment.personalization.ExperimentObject (implements java.io.Serializable)
- com.compomics.util.Export
- com.compomics.util.io.export.ExportWriter
- com.compomics.util.experiment.identification.protein_sequences.digestion.ExtendedPeptide
- com.compomics.util.experiment.io.biology.protein.iterators.FastaIterator (implements com.compomics.util.experiment.io.biology.protein.ProteinIterator)
- com.compomics.cli.fasta.FastaParametersInputBean
- com.compomics.util.experiment.io.biology.protein.FastaSummary
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_generation.FeaturesGenerator
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.FeaturesMap
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.FeaturesMapManager
- com.compomics.util.messages.FeedBack
- com.compomics.util.gui.file_handling.FileAndFileFilter
- com.compomics.util.gui.file_handling.FileChooserUtil
- com.compomics.software.autoupdater.FileDAO
- javax.swing.filechooser.FileFilter
- com.compomics.util.io.file.filefilters.FileFilterUtils
- com.compomics.util.general.FileLoggerImplementation (implements com.compomics.util.interfaces.Logger)
- com.compomics.util.io.file.FileSystemAccessor
- com.compomics.util.pdbfinder.FindPdbForUniprotAccessions
- com.compomics.util.io.file.FolderMonitor (implements java.lang.Runnable)
- com.compomics.util.experiment.identification.spectrum_annotation.simple_annotators.FragmentAnnotator
- com.compomics.util.experiment.identification.spectrum_annotation.simple_annotators.FragmentAnnotatorNL
- com.compomics.util.gui.renderers.FragmentIonTableCellRenderer (implements javax.swing.table.TableCellRenderer)
- com.compomics.util.experiment.identification.peptide_fragmentation.FragmentItensityPredictor
- com.compomics.util.io.ftp.FTP
- com.compomics.util.io.ftp.FTPClient
- com.compomics.util.io.ftp.FTPDownloader
- com.compomics.util.experiment.biology.genes.ensembl.GeneMapping
- com.compomics.util.experiment.io.biology.protein.converters.GenericFastaConverter
- javax.servlet.GenericServlet (implements java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig)
- javax.servlet.http.HttpServlet (implements java.io.Serializable)
- com.compomics.util.db.components.GettersAndSetters
- com.compomics.util.experiment.biology.genes.go.GoDomains
- com.compomics.util.experiment.biology.genes.go.GoMapping
- com.compomics.util.gui.GuiUtilities
- com.compomics.util.io.compression.GzUtils
- com.compomics.util.experiment.io.biology.protein.iterators.HeaderIterator
- com.compomics.util.math.HistogramUtils
- com.compomics.util.experiment.identification.psm_scoring.psm_scores.HyperScore
- com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator
- com.compomics.util.experiment.identification.identification_parameters.IdentificationParametersFactory
- com.compomics.cli.identification_parameters.IdentificationParametersInputBean
- com.compomics.util.experiment.io.identification.IdfileReaderFactory
- com.compomics.util.experiment.identification.spectrum_annotation.simple_annotators.ImmoniumIonAnnotator
- com.compomics.util.experiment.io.mass_spectrometry.mgf.IndexedMgfReader
- java.io.InputStream (implements java.io.Closeable)
- com.compomics.util.experiment.biology.variants.amino_acids.Insertion (implements com.compomics.util.experiment.biology.variants.Variant)
- com.compomics.util.db.components.InstanceVariables
- com.compomics.util.experiment.io.mass_spectrometry.mzml.IntDecoder
- com.compomics.util.io.json.adapter.InterfaceAdapter<T> (implements com.google.gson.JsonDeserializer<T>, com.google.gson.JsonSerializer<T>)
- com.compomics.util.experiment.biology.ions.IonFactory
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.IonFeature (implements com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature)
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.ComplementaryIonFeature
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.ForwardIonFeature
- com.compomics.util.experiment.identification.spectrum_annotation.IonMatchKeysCache
- com.compomics.util.io.IoUtil
- com.compomics.util.general.IsotopicDistribution
- com.compomics.util.general.IsotopicDistributionSpectrum (implements com.compomics.util.interfaces.SpectrumFile)
- com.compomics.util.general.IsotopicElement
- com.compomics.util.experiment.identification.protein_sequences.digestion.IteratorFactory
- com.compomics.software.autoupdater.JarFileFilter (implements java.io.FilenameFilter)
- com.compomics.util.gui.JOptionEditorPane
- com.compomics.util.math.clustering.KMeansClustering
- com.compomics.util.math.clustering.settings.KMeansClusteringSettings
- com.compomics.util.math.statistics.linear_regression.LinearRegression
- com.compomics.cli.peptide_mapper.MappingWorker (implements java.lang.Runnable)
- com.compomics.util.io.MascotEnzymeReader
- com.compomics.util.experiment.io.identification.idfilereaders.MascotIdfileReader (implements com.compomics.util.experiment.io.identification.IdfileReader)
- com.compomics.util.general.MassCalc
- com.compomics.util.experiment.identification.matches_iterators.MatchesIterator
- com.compomics.util.experiment.identification.modification.scores.MDScore
- com.compomics.util.math.statistics.linear_regression.regressions.MedianRegression
- com.compomics.util.memory.MemoryConsumptionStatus
- com.compomics.software.autoupdater.MetaDataXMLParser
- com.compomics.util.experiment.io.mass_spectrometry.mgf.MgfFileIterator (implements com.compomics.util.experiment.io.mass_spectrometry.MsFileIterator)
- com.compomics.util.experiment.io.mass_spectrometry.mgf.MgfFileUtils
- com.compomics.util.experiment.io.mass_spectrometry.mgf.MgfFileWriter (implements java.lang.AutoCloseable)
- com.compomics.util.experiment.biology.modifications.ModificationFactory (implements com.compomics.util.experiment.biology.modifications.ModificationProvider)
- com.compomics.util.protein.ModificationFactory
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.ModificationFeature (implements com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature)
- com.compomics.util.protein.ModificationImplementation (implements java.lang.Cloneable, com.compomics.util.interfaces.Modification)
- com.compomics.util.experiment.identification.modification.mapping.ModificationLocalizationMapper
- com.compomics.util.experiment.identification.modification.mapping.ModificationMassMapper
- com.compomics.util.experiment.identification.modification.mapping.ModificationNameMapper
- com.compomics.util.gui.protein.ModificationProfile
- com.compomics.cli.modifications.ModificationsCLI
- com.compomics.cli.modifications.ModificationsCLIInputBean
- com.compomics.util.experiment.identification.modification.ModificationSiteMapping
- com.compomics.util.experiment.identification.modification.ModificationtableContent
- com.compomics.util.protein.ModificationTemplate
- com.compomics.util.experiment.identification.utils.ModificationUtils
- com.compomics.util.protein.MolecularFormula
- com.compomics.util.gui.MonitorDimension
- com.compomics.util.experiment.io.mass_spectrometry.ms2.Ms2Exporter
- com.compomics.util.experiment.io.mass_spectrometry.ms2.Ms2FileWriter
- com.compomics.util.experiment.io.identification.idfilereaders.MsAmandaIdfileReader (implements com.compomics.util.experiment.io.identification.IdfileReader)
- com.compomics.util.experiment.mass_spectrometry.proteowizard.MsConvertParameters
- com.compomics.util.experiment.io.mass_spectrometry.MsFileExporter
- com.compomics.util.experiment.io.mass_spectrometry.MsFileHandler (implements com.compomics.util.experiment.mass_spectrometry.SpectrumProvider)
- com.compomics.scripts_marc.MsFilePerformance
- com.compomics.util.experiment.io.mass_spectrometry.mzml.MSNumpress
- com.compomics.util.experiment.identification.features.MutexMap
- com.compomics.util.experiment.io.identification.idfilereaders.MzIdentMLIdfileReader (implements com.compomics.util.experiment.io.identification.IdfileReader)
- com.compomics.util.experiment.io.mass_spectrometry.mzml.MzmlFileIterator (implements com.compomics.util.experiment.io.mass_spectrometry.MsFileIterator)
- com.compomics.util.experiment.io.mass_spectrometry.mzml.MzmlFileUtils
- com.compomics.util.experiment.biology.ions.NeutralLossCombination
- com.compomics.util.experiment.identification.protein_sequences.digestion.iterators.NoDigestionCombinationIterator (implements com.compomics.util.experiment.identification.protein_sequences.digestion.SequenceIterator)
- com.compomics.util.experiment.identification.protein_sequences.digestion.iterators.NoDigestionIterator (implements com.compomics.util.experiment.identification.protein_sequences.digestion.SequenceIterator)
- com.compomics.util.experiment.normalization.NormalizationFactors
- com.compomics.util.math.statistics.distributions.NormalKernelDensityEstimator
- com.compomics.util.experiment.io.identification.idfilereaders.NovorIdfileReader (implements com.compomics.util.experiment.io.identification.IdfileReader)
- com.compomics.util.nucleotide.NucleotideSequence
- com.compomics.util.nucleotide.NucleotideSequenceImpl (implements com.compomics.util.interfaces.Sequence)
- com.compomics.util.threading.ObjectMutex
- com.compomics.util.db.object.ObjectsCache
- com.compomics.util.db.object.ObjectsCache.ObjectsCacheElement
- com.compomics.util.db.object.ObjectsDB
- com.compomics.util.experiment.io.identification.idfilereaders.OnyaseIdfileReader (implements com.compomics.util.experiment.io.identification.IdfileReader)
- com.compomics.cli.paths.PathSettingsCLI
- com.compomics.cli.paths.PathSettingsCLIInputBean
- com.compomics.util.experiment.patient.Patient
- com.compomics.util.experiment.patient.PatientInformation
- com.compomics.util.pdbfinder.pdb.PdbBlock
- com.compomics.util.pdbfinder.pdb.PdbParameter
- com.compomics.util.experiment.identification.protein_inference.PeptideAndProteinBuilder
- com.compomics.util.experiment.identification.protein_sequences.digestion.PeptideDraft
- com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.PeptideFeature (implements com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature)
- com.compomics.util.experiment.identification.peptide_inference.PeptideInference
- com.compomics.cli.peptide_mapper.PeptideMapperCLI
- com.compomics.util.experiment.identification.protein_inference.PeptideProteinMapping
- com.compomics.util.experiment.identification.utils.PeptideUtils
- com.compomics.util.experiment.io.identification.idfilereaders.PepxmlIdfileReader (implements com.compomics.util.experiment.io.identification.IdfileReader)
- com.compomics.util.db.components.PersistableCode
- com.compomics.util.experiment.identification.modification.scores.PhosphoRS
- com.compomics.util.io.PklFile
- com.compomics.util.experiment.identification.psm_scoring.psm_scores.PrecursorAccuracy
- com.compomics.util.experiment.identification.spectrum_annotation.simple_annotators.PrecursorAnnotator
- com.compomics.util.experiment.mass_spectrometry.indexes.PrecursorMap
- com.compomics.util.experiment.mass_spectrometry.indexes.PrecursorMap.PrecursorWithTitle
- com.compomics.util.pride.prideobjects.webservice.query.PrideFilter
- com.compomics.util.pride.PrideObjectsFactory
- com.compomics.util.pride.PrideWebService
- com.compomics.util.pride.validation.PrideXmlValidator
- com.compomics.util.math.statistics.linear_regression.filters.ProbabilityFilter
- com.compomics.util.parameters.tools.ProcessingParameters
- com.compomics.util.io.PropertiesManager
- com.compomics.util.protein.Protein
- com.compomics.util.experiment.biology.genes.ProteinGeneDetailsProvider
- com.compomics.util.experiment.identification.protein_sequences.digestion.ProteinIteratorUtils
- com.compomics.util.gui.protein.ProteinSequencePane
- com.compomics.util.experiment.identification.utils.ProteinUtils
- com.compomics.util.experiment.identification.psm_scoring.PsmScoresEstimator
- com.compomics.util.io.PushBackStringReader
- com.compomics.util.experiment.identification.protein_inference.fm_index.Rank (implements java.io.Serializable)
- com.compomics.util.experiment.quantification.reporterion.Reagent
- com.compomics.util.experiment.mass_spectrometry.spectra.RecalibrationUtils
- com.compomics.util.gui.spectrum.ReferenceArea
- com.compomics.util.math.statistics.linear_regression.RegressionStatistics
- com.compomics.util.experiment.identification.spectrum_annotation.simple_annotators.ReporterIonAnnotator
- com.compomics.util.experiment.quantification.reporterion.ReporterMethod
- com.compomics.util.gui.events.RescalingEvent
- com.compomics.util.db.components.RetrievableCode
- javax.swing.RowFilter<M,I>
- com.compomics.util.experiment.quantification.spectrumcounting.ScalingFactorsEstimators
- com.compomics.util.experiment.identification.peptide_fragmentation.models.SequestFragmentationModel
- com.compomics.util.io.file.SerializationUtils
- com.compomics.util.io.flat.SimpleFileWriter (implements java.lang.AutoCloseable)
- com.compomics.util.io.flat.readers.SimpleGzReader (implements com.compomics.util.io.flat.SimpleFileReader)
- com.compomics.util.math.statistics.linear_regression.regressions.SimpleLinearRegression
- com.compomics.util.experiment.io.identification.writers.SimpleMzIdentMLExporter (implements java.io.Closeable)
- com.compomics.util.experiment.mass_spectrometry.SimpleNoiseDistribution
- com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators.SimplePeptideAnnotator
- com.compomics.util.threading.SimpleSemaphore
- com.compomics.util.io.flat.readers.SimpleTextReader (implements com.compomics.util.io.flat.SimpleFileReader)
- com.compomics.util.io.export.xml.SimpleXmlWriter (implements java.lang.AutoCloseable)
- com.compomics.util.experiment.identification.protein_sequences.SingleProteinSequenceProvider (implements com.compomics.util.experiment.io.biology.protein.SequenceProvider)
- com.compomics.util.experiment.identification.psm_scoring.psm_scores.SnrScore
- com.compomics.util.experiment.biology.taxonomy.SpeciesFactory
- com.compomics.util.experiment.identification.spectrum_annotation.SpecificAnnotationParameters
- com.compomics.util.experiment.identification.protein_sequences.digestion.iterators.SpecificSingleEnzymeCombinationIterator (implements com.compomics.util.experiment.identification.protein_sequences.digestion.SequenceIterator)
- com.compomics.util.experiment.identification.protein_sequences.digestion.iterators.SpecificSingleEnzymeIterator (implements com.compomics.util.experiment.identification.protein_sequences.digestion.SequenceIterator)
- com.compomics.util.experiment.identification.spectrum_annotation.SpectrumAnnotator
- com.compomics.util.experiment.mass_spectrometry.indexes.SpectrumIndex
- com.compomics.util.experiment.mass_spectrometry.spectra.SpectrumUtil
- com.compomics.software.SplashScreen
- com.compomics.util.io.StartBrowser
- com.compomics.util.pdbfinder.das.readers.StartEndPosition
- com.compomics.util.io.StreamGobbler (implements java.lang.Runnable)
- com.compomics.util.StreamUtil
- com.compomics.util.experiment.biology.variants.amino_acids.Substitution (implements com.compomics.util.experiment.biology.variants.Variant)
- com.compomics.util.experiment.biology.variants.amino_acids.Swap (implements com.compomics.util.experiment.biology.variants.Variant)
- com.compomics.util.gui.utils.SwingUtils
- com.compomics.util.sun.SwingWorker
- com.compomics.util.gui.TableMouseWheelListener (implements java.awt.event.MouseWheelListener)
- com.compomics.util.gui.TableProperties
- com.compomics.util.gui.TableScrollBarListener (implements java.awt.event.AdjustmentListener)
- com.compomics.util.experiment.identification.TagFactory
- com.compomics.util.experiment.identification.utils.TagUtils
- com.compomics.util.io.compression.TarUtils
- com.compomics.util.TempByteArray
- com.compomics.util.experiment.io.temp.TempFilesManager
- com.compomics.util.junit.TestCaseLM
- com.compomics.util.experiment.mass_spectrometry.thermo_raw_file_parser.ThermoRawFileParserParameters
- java.lang.Throwable (implements java.io.Serializable)
- com.compomics.software.ToolFactory
- com.compomics.util.general.Translate
- com.google.gson.TypeAdapter<T>
- com.compomics.util.experiment.identification.peptide_fragmentation.models.UniformFragmentation
- com.compomics.util.experiment.biology.taxonomy.mappings.UniprotTaxonomy
- com.compomics.util.experiment.units.Units
- com.compomics.util.experiment.identification.protein_sequences.digestion.iterators.UnspecificCombinationIterator (implements com.compomics.util.experiment.identification.protein_sequences.digestion.SequenceIterator)
- com.compomics.util.experiment.identification.protein_sequences.digestion.iterators.UnspecificIterator (implements com.compomics.util.experiment.identification.protein_sequences.digestion.SequenceIterator)
- com.compomics.util.db.components.UpdateableCode
- com.compomics.util.Util
- com.compomics.util.gui.UtilitiesGUIDefaults
- com.compomics.software.settings.UtilitiesPathParameters
- com.compomics.util.math.VennDiagram
- com.compomics.util.gui.waiting.waitinghandlers.WaitingHandlerCLIImpl (implements com.compomics.util.waiting.WaitingHandler)
- com.compomics.util.gui.waiting.waitinghandlers.WaitingHandlerDummy (implements com.compomics.util.waiting.WaitingHandler)
- com.compomics.util.experiment.identification.protein_inference.fm_index.WaveletTree (implements java.io.Serializable)
- com.compomics.util.experiment.identification.protein_inference.fm_index.WaveletTree.HuffmanNode (implements java.lang.Comparable<T>)
- com.compomics.software.autoupdater.WebDAO
- com.compomics.util.io.compression.SectionGzWriter.WriterBySection (implements java.lang.AutoCloseable)
- com.compomics.util.pride.validation.XMLValidationErrorHandler (implements org.xml.sax.ErrorHandler)
- com.compomics.util.XYZDataPoint
- java.util.zip.ZipFile (implements java.io.Closeable)
- com.compomics.util.io.compression.ZipUtils
- com.compomics.util.io.compression.ZstdUtils
Interface Hierarchy
Enum Hierarchy
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