Package | Description |
---|---|
com.compomics.cli.peptide_mapper |
Command line for PeptideMapper.
|
com.compomics.util.experiment.identification.protein_inference.fm_index |
Protein sequence database indexing classes based on Burrows-Wheeler transform.
|
Modifier and Type | Method and Description |
---|---|
String |
MappingWorker.flanking(PeptideProteinMapping peptideProteinMapping,
FastaMapper peptideMapper) |
Constructor and Description |
---|
MappingWorker(WaitingHandlerCLIImpl waitingHandlerCLIImpl,
FastaMapper peptideMapper,
IdentificationParameters identificationParameters,
BufferedReader br,
PrintWriter writer,
boolean peptideMapping) |
Modifier and Type | Class and Description |
---|---|
class |
FMIndex
The FM index.
|
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