Package | Description |
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com.compomics.util.gui.parameters.identification.advanced |
Dialogs for advanced identification parameters.
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com.compomics.util.parameters.identification |
Identification parameters.
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com.compomics.util.parameters.identification.advanced |
Advanced Identification parameters.
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Modifier and Type | Method and Description |
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ProteinInferenceParameters |
ProteinInferenceParametersDialog.getProteinInferencePreferences()
Returns the protein inference preferences.
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Constructor and Description |
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ProteinInferenceParametersDialog(Dialog owner,
Frame parentFrame,
ProteinInferenceParameters proteinInferencePreferences,
Image normalIcon,
Image waitingIcon,
boolean editable)
Creates a new ProteinInferenceSettingsDialog with a dialog as owner.
|
ProteinInferenceParametersDialog(Frame parentFrame,
ProteinInferenceParameters proteinInferencePreferences,
Image normalIcon,
Image waitingIcon,
boolean editable)
Creates a new ProteinInferenceSettingsDialog with a frame as owner.
|
Modifier and Type | Method and Description |
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ProteinInferenceParameters |
IdentificationParameters.getProteinInferenceParameters()
Returns the protein inference parameters.
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Modifier and Type | Method and Description |
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void |
IdentificationParameters.setProteinInferenceParameters(ProteinInferenceParameters proteinInferenceParameters)
Sets the protein inference parameters.
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Constructor and Description |
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IdentificationParameters(String name,
String description,
SearchParameters searchParameters,
AnnotationParameters annotationParameters,
SequenceMatchingParameters sequenceMatchingParameters,
PeptideVariantsParameters peptideVariantsParameters,
GeneParameters geneParameters,
PsmScoringParameters psmScoringParameters,
PeptideAssumptionFilter peptideAssumptionFilter,
ModificationLocalizationParameters ModificationLocalizationParameters,
ProteinInferenceParameters proteinInferenceParameters,
IdMatchValidationParameters idValidationParameters,
FractionParameters fractionParameters,
FastaParameters fastaParameters)
Constructor.
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Modifier and Type | Method and Description |
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boolean |
ProteinInferenceParameters.equals(ProteinInferenceParameters otherProteinInferencePreferences)
Returns true if the objects have identical settings.
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