public class ModificationLocalizationMapper extends Object
Modifier and Type | Field and Description |
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static double |
MASS_PER_AA
The mass added per amino acid as part of the reference mass when
converting Dalton tolerances to ppm.
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Constructor and Description |
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ModificationLocalizationMapper() |
Modifier and Type | Method and Description |
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static void |
modificationLocalization(Peptide peptide,
HashMap<Integer,ArrayList<String>> expectedNames,
HashMap<ModificationMatch,ArrayList<String>> modNames,
IdentificationParameters identificationParameters,
IdfileReader idfileReader,
ModificationProvider modificationProvider)
Makes an initial modification mapping based on the search engine results
and the compatibility to the searched modifications.
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public static final double MASS_PER_AA
public static void modificationLocalization(Peptide peptide, HashMap<Integer,ArrayList<String>> expectedNames, HashMap<ModificationMatch,ArrayList<String>> modNames, IdentificationParameters identificationParameters, IdfileReader idfileReader, ModificationProvider modificationProvider)
peptide
- The peptide where the modification was found.expectedNames
- The expected modifications at each site.modNames
- The possible names for every modification match.identificationParameters
- The identification parameters.idfileReader
- The identification file reader.modificationProvider
- The modification provider to use.Copyright © 2021. All rights reserved.