public class FeaturesGenerator extends Object
Constructor and Description |
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FeaturesGenerator()
Empty default constructor
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FeaturesGenerator(FeaturesMap featuresMap)
Constructor.
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Modifier and Type | Method and Description |
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int[] |
getComplementaryIonsFeatures(Peptide peptide,
int charge,
int ionIndex,
ModificationParameters modificationParameters,
SequenceProvider sequenceProvider,
SequenceMatchingParameters modificationSequenceMatchingPreferences)
Returns the ms2pip features for the complementary ions of the given
peptide at the given charge.
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int[] |
getForwardIonsFeatures(Peptide peptide,
int charge,
int ionIndex,
ModificationParameters modificationParameters,
SequenceProvider sequenceProvider,
SequenceMatchingParameters modificationSequenceMatchingPreferences)
Returns the ms2pip features for the forward ions of the given peptide at
the given charge.
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public FeaturesGenerator()
public FeaturesGenerator(FeaturesMap featuresMap)
featuresMap
- a map of the features to include.public int[] getForwardIonsFeatures(Peptide peptide, int charge, int ionIndex, ModificationParameters modificationParameters, SequenceProvider sequenceProvider, SequenceMatchingParameters modificationSequenceMatchingPreferences)
peptide
- the peptidecharge
- the chargeionIndex
- the ion indexmodificationParameters
- the modification parameterssequenceProvider
- a provider for the protein sequencesmodificationSequenceMatchingPreferences
- the sequence matching
preferences for modification to peptide mappingpublic int[] getComplementaryIonsFeatures(Peptide peptide, int charge, int ionIndex, ModificationParameters modificationParameters, SequenceProvider sequenceProvider, SequenceMatchingParameters modificationSequenceMatchingPreferences)
peptide
- the peptidecharge
- the chargeionIndex
- the ion indexmodificationParameters
- the modification parameterssequenceProvider
- a provider for the protein sequencesmodificationSequenceMatchingPreferences
- the sequence matching
preferences for modification to peptide mappingCopyright © 2021. All rights reserved.