public class ModificationMassMapper extends Object
Constructor and Description |
---|
ModificationMassMapper() |
Modifier and Type | Method and Description |
---|---|
static double |
getMass(String searchEngineModificationName,
IdfileReader idfileReader,
SearchParameters searchParameters,
ModificationProvider modificationProvider)
Returns the mass indicated by the identification algorithm for the given
modification.
|
static double |
getMassAndromeda(String searchEngineModificationName,
ModificationProvider modificationProvider,
SearchParameters searchParameters)
Returns the mass indicated by the Andromeda for the given modification.
|
static double |
getMassByMass(String searchEngineModificationName)
Returns the mass indicated by the identification algorithm for the given
modification.
|
static double |
getMassByName(String searchEngineModificationName,
ModificationProvider modificationProvider)
Returns the mass indicated by the identification algorithm for the given
modification.
|
static double |
getMassOmssa(String searchEngineModificationName,
ModificationProvider modificationProvider,
SearchParameters searchParameters)
Returns the mass indicated by the OMSSA for the given modification.
|
public static double getMass(String searchEngineModificationName, IdfileReader idfileReader, SearchParameters searchParameters, ModificationProvider modificationProvider)
searchEngineModificationName
- The name according to the
identification file reader.idfileReader
- The identification file reader.searchParameters
- The search parameters.modificationProvider
- The modification provider to use.public static double getMassByMass(String searchEngineModificationName)
searchEngineModificationName
- The name according to the
identification file reader.public static double getMassByName(String searchEngineModificationName, ModificationProvider modificationProvider)
searchEngineModificationName
- The name according to the
identification file reader.modificationProvider
- The modification provider to use.public static double getMassOmssa(String searchEngineModificationName, ModificationProvider modificationProvider, SearchParameters searchParameters)
searchEngineModificationName
- The name according to the
identification file reader.modificationProvider
- The modification provider to use.searchParameters
- The search parameters.public static double getMassAndromeda(String searchEngineModificationName, ModificationProvider modificationProvider, SearchParameters searchParameters)
searchEngineModificationName
- The name according to the
identification file reader.modificationProvider
- The modification provider to use.searchParameters
- The search parameters.Copyright © 2021. All rights reserved.