Package | Description |
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com.compomics.util.experiment.identification.spectrum_annotation.simple_annotators |
This package contains implementations of the SimpleAnnotator allowing the annotation of specific sets of ions.
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com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators |
This package contains implementations of the SpectrumAnnotator allowing the annotation of all ions.
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Modifier and Type | Method and Description |
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ArrayList<IonMatch> |
ReporterIonAnnotator.getIonMatches(SpectrumIndex spectrumIndex)
Returns the ions matched in the given spectrum.
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ArrayList<IonMatch> |
ImmoniumIonAnnotator.getIonMatches(SpectrumIndex spectrumIndex)
Returns the ions matched in the given spectrum.
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ArrayList<IonMatch> |
FragmentAnnotatorNL.getIonMatches(SpectrumIndex spectrumIndex,
int peptideCharge)
Returns the ions matched in the given spectrum at the given charge.
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ArrayList<IonMatch> |
FragmentAnnotator.getIonMatches(SpectrumIndex spectrumIndex,
int peptideCharge)
Returns the ions matched in the given spectrum at the given charge.
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ArrayList<IonMatch> |
PrecursorAnnotator.getIonMatches(SpectrumIndex spectrumIndex,
int peptideCharge,
int isotopeMax)
Returns the ions matched in the given spectrum at the given charge.
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Modifier and Type | Method and Description |
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ArrayList<IonMatch> |
SimplePeptideAnnotator.getIonMatches(SpectrumIndex spectrumIndex,
int peptideCharge,
int precursorIsotopeMax)
Returns the ion matches for the given spectrum.
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