Package | Description |
---|---|
com.compomics.util.experiment.biology.aminoacids.sequence |
Classes related to the handling of protein sequences.
|
com.compomics.util.experiment.identification.amino_acid_tags |
Amino Acid Tag classes.
|
Modifier and Type | Class and Description |
---|---|
class |
AminoAcidSequence
This class represents a series of amino acids with associated modifications.
|
Modifier and Type | Method and Description |
---|---|
boolean |
AminoAcidSequence.isSameAs(TagComponent anotherCompontent,
SequenceMatchingParameters sequenceMatchingPreferences) |
boolean |
AminoAcidSequence.isSameSequenceAndModificationStatusAs(TagComponent anotherCompontent,
SequenceMatchingParameters sequenceMatchingPreferences) |
Modifier and Type | Class and Description |
---|---|
class |
MassGap
An undefined mass gap.
|
Modifier and Type | Method and Description |
---|---|
ArrayList<TagComponent> |
Tag.getContent()
Returns the content of this tag as a list.
|
Modifier and Type | Method and Description |
---|---|
boolean |
TagComponent.isSameAs(TagComponent anotherCompontent,
SequenceMatchingParameters sequenceMatchingPreferences)
Indicates whether another component is the same as the component of
interest.
|
boolean |
MassGap.isSameAs(TagComponent anotherCompontent,
SequenceMatchingParameters sequenceMatchingPreferences) |
boolean |
TagComponent.isSameSequenceAndModificationStatusAs(TagComponent anotherCompontent,
SequenceMatchingParameters sequenceMatchingPreferences)
Indicates whether another component is the same as the component of
interest.
|
boolean |
MassGap.isSameSequenceAndModificationStatusAs(TagComponent anotherCompontent,
SequenceMatchingParameters sequenceMatchingPreferences) |
Modifier and Type | Method and Description |
---|---|
void |
Tag.setContent(ArrayList<TagComponent> content)
Sets the content for the given tag.
|
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