public class PeptideMapperCLI extends Object
Modifier and Type | Field and Description |
---|---|
static int |
TIMEOUT_DAYS |
Constructor and Description |
---|
PeptideMapperCLI() |
Modifier and Type | Method and Description |
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static void |
convertSearchGUIFile(String[] args) |
static void |
handleError(String outputFileName,
String errorMessage,
Throwable e) |
static void |
handleParameters(String[] args) |
static void |
main(String[] args)
Main class.
|
static void |
printHelp() |
static void |
runMapping(File fastaFile,
WaitingHandlerCLIImpl waitingHandlerCLIImpl,
IdentificationParameters identificationParameters,
String inputFileName,
String outputFileName,
int nCores,
boolean peptideMapping) |
static String |
tagToString(Tag tag) |
public static void printHelp()
public static void main(String[] args)
args
- command line argumentspublic static void convertSearchGUIFile(String[] args)
public static void handleParameters(String[] args)
public static void runMapping(File fastaFile, WaitingHandlerCLIImpl waitingHandlerCLIImpl, IdentificationParameters identificationParameters, String inputFileName, String outputFileName, int nCores, boolean peptideMapping)
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