Enum PsIdentificationAlgorithmMatchesFeature
java.lang.Object
java.lang.Enum<PsIdentificationAlgorithmMatchesFeature>
com.compomics.util.io.export.features.PsIdentificationAlgorithmMatchesFeature
- All Implemented Interfaces:
ExportFeature
,Serializable
,Comparable<PsIdentificationAlgorithmMatchesFeature>
,java.lang.constant.Constable
public enum PsIdentificationAlgorithmMatchesFeature extends Enum<PsIdentificationAlgorithmMatchesFeature> implements ExportFeature
This class lists the Algorithm identification features.
- Author:
- Marc Vaudel, Harald Barsnes
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Nested Class Summary
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Enum Constant Summary
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Field Summary
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Method Summary
Modifier and Type Method Description String
getDescription()
Returns the description of the feature.ArrayList<ExportFeature>
getExportFeatures(boolean includeSubFeatures)
Returns a list of all implemented export features.String
getFeatureFamily()
Returns the family type of this export feature.String
getTitle()
Returns the column title of the feature.boolean
isAdvanced()
Indicates whether a feature is for advanced user only.static PsIdentificationAlgorithmMatchesFeature
valueOf(String name)
Returns the enum constant of this type with the specified name.static PsIdentificationAlgorithmMatchesFeature[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Details
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rank
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accessions
@SerializedName("PsIdentificationAlgorithmMatchesFeature.accessions") public static final PsIdentificationAlgorithmMatchesFeature accessions -
protein_description
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sequence
@SerializedName("PsIdentificationAlgorithmMatchesFeature.sequence") public static final PsIdentificationAlgorithmMatchesFeature sequence -
aaBefore
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aaAfter
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position
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missed_cleavages
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modified_sequence
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variable_ptms
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fixed_ptms
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spectrum_file
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spectrum_title
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spectrum_scan_number
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spectrum_array_list
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rt
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mz
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spectrum_charge
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precursor_intensity
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total_spectrum_intensity
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intensity_coverage
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max_intensity
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identification_charge
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theoretical_mass
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isotope
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mz_error_ppm
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mz_error_da
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algorithm_score
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algorithm_raw_score
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algorithm_confidence
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algorithm_delta_confidence
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delta_confidence
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fragment_mz_accuracy_score
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intensity_score
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sequence_coverage
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longest_amino_acid_sequence_annotated
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longest_amino_acid_sequence_annotated_single_serie
public static final PsIdentificationAlgorithmMatchesFeature longest_amino_acid_sequence_annotated_single_serie -
amino_acids_annotated
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decoy
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validated
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starred
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Field Details
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title
The title of the feature which will be used for column heading. -
description
The description of the feature. -
type
The type of export feature.- See Also:
- Constant Field Values
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Method Details
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values
Returns an array containing the constants of this enum type, in the order they are declared.- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null
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getExportFeatures
Description copied from interface:ExportFeature
Returns a list of all implemented export features.- Specified by:
getExportFeatures
in interfaceExportFeature
- Parameters:
includeSubFeatures
- boolean indicating whether sub features should be included- Returns:
- a list of all implemented export features
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getTitle
Description copied from interface:ExportFeature
Returns the column title of the feature.- Specified by:
getTitle
in interfaceExportFeature
- Returns:
- the column title of the feature
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getDescription
Description copied from interface:ExportFeature
Returns the description of the feature.- Specified by:
getDescription
in interfaceExportFeature
- Returns:
- the description of the feature
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getFeatureFamily
Description copied from interface:ExportFeature
Returns the family type of this export feature.- Specified by:
getFeatureFamily
in interfaceExportFeature
- Returns:
- the family type of this export feature
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isAdvanced
public boolean isAdvanced()Description copied from interface:ExportFeature
Indicates whether a feature is for advanced user only.- Specified by:
isAdvanced
in interfaceExportFeature
- Returns:
- a boolean indicating whether a feature is for advanced user only
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