java.lang.Object
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AAIdentityFeature
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.AAIdentityFeatureRelative
All Implemented Interfaces:
Ms2pipFeature

public class AAIdentityFeatureRelative
extends AAIdentityFeature
An amino acid identity feature at a position relative to the end of an ion on the peptide sequence. In this feature, an index of 0 represents the last amino acid of the ion.
Author:
Marc Vaudel
  • Field Details

  • Constructor Details

    • AAIdentityFeatureRelative

      public AAIdentityFeatureRelative()
      Empty default constructor
    • AAIdentityFeatureRelative

      public AAIdentityFeatureRelative​(int aaIndex, char aminoAcid)
      Constructor. An index of 0 represents the last amino acid of the ion.
      Parameters:
      aaIndex - the index of the amino acid
      aminoAcid - the amino acid targeted
  • Method Details

    • getCategory

      public String getCategory()
      Description copied from interface: Ms2pipFeature
      Returns the category of the feature.
      Returns:
      the category of the feature
    • getDescription

      public String getDescription()
      Description copied from interface: Ms2pipFeature
      Returns the description of the feature.
      Returns:
      the description of the feature
    • getIndex

      public int getIndex()
      Description copied from interface: Ms2pipFeature
      Returns an integer unique to this class.
      Returns:
      an integer unique to this class