Uses of Class
com.compomics.util.experiment.identification.spectrum_annotation.AnnotationParameters.IntensityThresholdType
Package | Description |
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com.compomics.util.experiment.identification.spectrum_annotation |
Classes used for ms2 spectrum annotation.
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com.compomics.util.experiment.mass_spectrometry.spectra |
Experiment classes related to spectra.
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Uses of AnnotationParameters.IntensityThresholdType in com.compomics.util.experiment.identification.spectrum_annotation
Methods in com.compomics.util.experiment.identification.spectrum_annotation that return AnnotationParameters.IntensityThresholdType Modifier and Type Method Description AnnotationParameters.IntensityThresholdType
AnnotationParameters. getIntensityThresholdType()
Returns the intensity threshold type.static AnnotationParameters.IntensityThresholdType
AnnotationParameters.IntensityThresholdType. valueOf(String name)
Returns the enum constant of this type with the specified name.static AnnotationParameters.IntensityThresholdType[]
AnnotationParameters.IntensityThresholdType. values()
Returns an array containing the constants of this enum type, in the order they are declared.Methods in com.compomics.util.experiment.identification.spectrum_annotation with parameters of type AnnotationParameters.IntensityThresholdType Modifier and Type Method Description void
AnnotationParameters. setIntensityThresholdType(AnnotationParameters.IntensityThresholdType intensityThresholdType)
Sets the intensity threshold type. -
Uses of AnnotationParameters.IntensityThresholdType in com.compomics.util.experiment.mass_spectrometry.spectra
Methods in com.compomics.util.experiment.mass_spectrometry.spectra with parameters of type AnnotationParameters.IntensityThresholdType Modifier and Type Method Description static double
SpectrumUtil. getIntensityLimit(Spectrum spectrum, AnnotationParameters.IntensityThresholdType intensityThresholdType, double thresholdValue)
Returns the limit in intensity according to the given threshold.static double[][]
SpectrumUtil. getPeaksAboveIntensityThreshold(Spectrum spectrum, AnnotationParameters.IntensityThresholdType intensityThresholdType, double thresholdValue)
Returns the peaks above intensity threshold as an array of double (mz, intensity).