Uses of Package
com.compomics.util.experiment.biology.modifications
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Classes in com.compomics.util.experiment.biology.modifications used by com.compomics.cli.modifications Class Description Modification This class models a peptide or protein modification. -
Classes in com.compomics.util.experiment.biology.modifications used by com.compomics.util.experiment.biology.modifications Class Description Modification This class models a peptide or protein modification.ModificationCategory Enum for the different modification categories supported.ModificationFactory This factory will load Modification from an XML file and provide them on demand as standard class.ModificationProvider Interface for a modification provider.ModificationType Enum for the different types of modifications supported. -
Classes in com.compomics.util.experiment.biology.modifications used by com.compomics.util.experiment.biology.proteins Class Description Modification This class models a peptide or protein modification. -
Classes in com.compomics.util.experiment.biology.modifications used by com.compomics.util.experiment.identification.amino_acid_tags Class Description Modification This class models a peptide or protein modification. -
Classes in com.compomics.util.experiment.biology.modifications used by com.compomics.util.experiment.identification.modification Class Description Modification This class models a peptide or protein modification. -
Classes in com.compomics.util.experiment.biology.modifications used by com.compomics.util.experiment.identification.modification.mapping Class Description ModificationProvider Interface for a modification provider. -
Classes in com.compomics.util.experiment.biology.modifications used by com.compomics.util.experiment.identification.modification.scores Class Description Modification This class models a peptide or protein modification. -
Classes in com.compomics.util.experiment.biology.modifications used by com.compomics.util.experiment.identification.peptide_inference Class Description ModificationProvider Interface for a modification provider. -
Classes in com.compomics.util.experiment.biology.modifications used by com.compomics.util.experiment.identification.peptide_shaker Class Description ModificationProvider Interface for a modification provider. -
Classes in com.compomics.util.experiment.biology.modifications used by com.compomics.util.experiment.identification.protein_inference.fm_index Class Description Modification This class models a peptide or protein modification. -
Classes in com.compomics.util.experiment.biology.modifications used by com.compomics.util.experiment.identification.utils Class Description Modification This class models a peptide or protein modification. -
Classes in com.compomics.util.experiment.biology.modifications used by com.compomics.util.experiment.io.identification.writers Class Description ModificationProvider Interface for a modification provider. -
Classes in com.compomics.util.experiment.biology.modifications used by com.compomics.util.gui.modification Class Description Modification This class models a peptide or protein modification. -
Classes in com.compomics.util.experiment.biology.modifications used by com.compomics.util.parameters.identification.search Class Description Modification This class models a peptide or protein modification. -
Classes in com.compomics.util.experiment.biology.modifications used by com.compomics.util.parameters.identification.tool_specific Class Description ModificationCategory Enum for the different modification categories supported.