Package com.compomics.util.gui.spectrum
Spectrum and Chromatogram visualization GUI classes.
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Class Summary Class Description ChromatogramPanel This class provides a JPanel that can display a profileChromatogram.DefaultSpectrumAnnotation This class provides a default implementation of the SpectrumAnnotation interface.FragmentIonTable Creates a fragment ion table with the detected fragment ions.GraphicsPanel This class presents a JPanel that will hold and display a mass spectrum or a chromatogram.IntensityHistogram Creates an IntensityHistogram plot.IonLabelColorTableModel A table model to use for the ion label annotation colors.IsotopicDistributionPanel This class provides a JPanel that can display a peptide isotopic distribution.MassErrorBubblePlot Creates a MassErrorBubblePlot displaying the mz values vs the mass error with the intensity as the size of the bubbles.MassErrorPlot Creates a MassErrorPlot displaying the mz values vs the mass error.ReferenceArea A reference area to be added to a GraphicsPanel.SequenceFragmentationPanel This class was imported from the Peptizer and MascotDatfile parser, and was developed to display fragmentation information on the modified sequence as inspired by X!Tandem.SpectrumPanel This class presents a JPanel that will hold and display a mass spectrum in centroid or profile mode. -
Enum Summary Enum Description GraphicsPanel.DrawingStyle An enumerator of the possible GraphicsPanel types.GraphicsPanel.GraphicsPanelType An enumerator of the possible GraphicsPanel types.