Class ForwardIonAminoAcidFeature
java.lang.Object
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AASequenceFeature
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.ForwardIonAminoAcidFeature
- All Implemented Interfaces:
Ms2pipFeature
,SingleAAPropertyFeature
public class ForwardIonAminoAcidFeature extends AASequenceFeature
Feature based on the amino acid properties of the forward ion.
- Author:
- Marc Vaudel
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Nested Class Summary
Nested classes/interfaces inherited from class com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AASequenceFeature
AASequenceFeature.Function
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Field Summary
Fields Modifier and Type Field Description static int
index
The index of this ms2pip feature.Fields inherited from class com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AASequenceFeature
aminoAcidProperty, function
Fields inherited from interface com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature
implementations
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Constructor Summary
Constructors Constructor Description ForwardIonAminoAcidFeature()
Empty default constructorForwardIonAminoAcidFeature(AminoAcid.Property aminoAcidProperty, AASequenceFeature.Function function)
Constructor. -
Method Summary
Modifier and Type Method Description String
getCategory()
Returns the category of the feature.String
getDescription()
Returns the description of the feature.int
getIndex()
Returns an integer unique to this class.Methods inherited from class com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AASequenceFeature
getAminoAcidProperty, getFunction, setAminoAcidProperty, setFunction
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Field Details
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index
public static final int indexThe index of this ms2pip feature.- See Also:
- Constant Field Values
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Constructor Details
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ForwardIonAminoAcidFeature
public ForwardIonAminoAcidFeature()Empty default constructor -
ForwardIonAminoAcidFeature
public ForwardIonAminoAcidFeature(AminoAcid.Property aminoAcidProperty, AASequenceFeature.Function function)Constructor.- Parameters:
aminoAcidProperty
- the amino acid property to considerfunction
- the function used to compare the amino acid properties
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Method Details
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getCategory
Description copied from interface:Ms2pipFeature
Returns the category of the feature.- Returns:
- the category of the feature
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getDescription
Description copied from interface:Ms2pipFeature
Returns the description of the feature.- Returns:
- the description of the feature
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getIndex
public int getIndex()Description copied from interface:Ms2pipFeature
Returns an integer unique to this class.- Returns:
- an integer unique to this class
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