Package com.compomics.util.experiment.io.biology.protein

Experiment IO classes for biological resources.
  • Interface Summary 
    Interface Description
    ProteinDetailsProvider
    Interface for a class able to provide metadata on proteins.
    ProteinIterator
    Interface for a protein iterator.
    SequenceProvider
    Interface for a class able to retrieve the sequence of a given protein.
  • Class Summary 
    Class Description
    FastaParameters
    The parameters used to parse a FASTA file.
    FastaSummary
    This class parses a FASTA file and gathers summary statistics.
    Header
    This class represents the header for a Protein instance.
  • Enum Summary 
    Enum Description
    ProteinDatabase
    Enum of the supported protein databases.