Uses of Class
com.compomics.util.parameters.identification.search.SearchParameters

Packages that use SearchParameters 
Package Description
com.compomics.util.experiment.biology.modifications  
com.compomics.util.experiment.identification.filtering
Classes for the filtering of identification objects.
com.compomics.util.experiment.identification.modification.mapping
Mapping between search engine and Utilities modifications.
com.compomics.util.experiment.identification.protein_inference.fm_index
Protein sequence database indexing classes based on Burrows-Wheeler transform.
com.compomics.util.experiment.identification.spectrum_annotation
Classes used for ms2 spectrum annotation.
com.compomics.util.experiment.identification.utils
This package contains utilities classes to handle identification objects.
com.compomics.util.experiment.io.identification
Experiment identification classes.
com.compomics.util.experiment.io.identification.idfilereaders
Experiment classes related to reading search engine files.
com.compomics.util.experiment.io.mass_spectrometry
Classes for the handling of mass spectrometry files.
com.compomics.util.gui.parameters.identification.advanced
Dialogs for advanced identification parameters.
com.compomics.util.gui.parameters.identification.search
Dialogs for search parameters.
com.compomics.util.parameters.identification
Identification parameters.
com.compomics.util.parameters.identification.search
Identification parameters relative to the search.
com.compomics.util.pride
Objects related to mapping to PRIDE.