Uses of Class
com.compomics.util.experiment.biology.modifications.Modification

Packages that use Modification 
Package Description
com.compomics.cli.modifications
Command line for the handling of modifications.
com.compomics.util.experiment.biology.modifications  
com.compomics.util.experiment.biology.proteins
Classes related to proteins.
com.compomics.util.experiment.identification.amino_acid_tags
Amino Acid Tag classes.
com.compomics.util.experiment.identification.modification
Modification mapping and localization.
com.compomics.util.experiment.identification.modification.scores
PTM scores.
com.compomics.util.experiment.identification.protein_inference.fm_index
Protein sequence database indexing classes based on Burrows-Wheeler transform.
com.compomics.util.experiment.identification.utils
This package contains utilities classes to handle identification objects.
com.compomics.util.gui.modification
PTM GUI dialogs.
com.compomics.util.parameters.identification.search
Identification parameters relative to the search.