Class FractionParameters

java.lang.Object
com.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.parameters.identification.advanced.FractionParameters
All Implemented Interfaces:
Serializable

public class FractionParameters
extends ExperimentObject
Settings for the handling of fractions.
Author:
Marc Vaudel, Harald Barsnes
See Also:
Serialized Form
  • Constructor Details

  • Method Details

    • getProteinConfidenceMwPlots

      public Double getProteinConfidenceMwPlots()
      Returns the protein confidence for inclusion in MW plots.
      Returns:
      the protein confidence for inclusion in MW plots
    • setProteinConfidenceMwPlots

      public void setProteinConfidenceMwPlots​(Double proteinConfidenceMwPlots)
      Sets the protein confidence for inclusion in MW plots.
      Parameters:
      proteinConfidenceMwPlots - the protein confidence for inclusion in MW plots
    • isSameAs

      public boolean isSameAs​(FractionParameters fractionSettings)
      Returns a boolean indicating whether other given settings are the same as these.
      Parameters:
      fractionSettings - other settings to compare to
      Returns:
      a boolean indicating whether other given settings are the same as these
    • getFractionMolecularWeightRanges

      public HashMap<String,​no.uib.jsparklines.data.XYDataPoint> getFractionMolecularWeightRanges()
      Returns the user provided molecular weight ranges for the fractions. The key is the fraction file path.
      Returns:
      the user provided molecular weight ranges of the fractions
    • setFractionMolecularWeightRanges

      public void setFractionMolecularWeightRanges​(HashMap<String,​no.uib.jsparklines.data.XYDataPoint> fractionMolecularWeightRanges)
      Set the user provided molecular weight ranges for the fractions. The key is the fraction file name.
      Parameters:
      fractionMolecularWeightRanges - the fractionMolecularWeightRanges to set
    • getShortDescription

      public String getShortDescription()
      Returns a short description of the parameters.
      Returns:
      a short description of the parameters