Uses of Class
com.compomics.util.parameters.identification.advanced.ProteinInferenceParameters
Package | Description |
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com.compomics.util.gui.parameters.identification.advanced |
Dialogs for advanced identification parameters.
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com.compomics.util.parameters.identification |
Identification parameters.
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com.compomics.util.parameters.identification.advanced |
Advanced Identification parameters.
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Uses of ProteinInferenceParameters in com.compomics.util.gui.parameters.identification.advanced
Methods in com.compomics.util.gui.parameters.identification.advanced that return ProteinInferenceParameters Modifier and Type Method Description ProteinInferenceParameters
ProteinInferenceParametersDialog. getProteinInferencePreferences()
Returns the protein inference preferences.Constructors in com.compomics.util.gui.parameters.identification.advanced with parameters of type ProteinInferenceParameters Constructor Description ProteinInferenceParametersDialog(Dialog owner, Frame parentFrame, ProteinInferenceParameters proteinInferencePreferences, Image normalIcon, Image waitingIcon, boolean editable)
Creates a new ProteinInferenceSettingsDialog with a dialog as owner.ProteinInferenceParametersDialog(Frame parentFrame, ProteinInferenceParameters proteinInferencePreferences, Image normalIcon, Image waitingIcon, boolean editable)
Creates a new ProteinInferenceSettingsDialog with a frame as owner. -
Uses of ProteinInferenceParameters in com.compomics.util.parameters.identification
Methods in com.compomics.util.parameters.identification that return ProteinInferenceParameters Modifier and Type Method Description ProteinInferenceParameters
IdentificationParameters. getProteinInferenceParameters()
Returns the protein inference parameters.Methods in com.compomics.util.parameters.identification with parameters of type ProteinInferenceParameters Modifier and Type Method Description void
IdentificationParameters. setProteinInferenceParameters(ProteinInferenceParameters proteinInferenceParameters)
Sets the protein inference parameters.Constructors in com.compomics.util.parameters.identification with parameters of type ProteinInferenceParameters Constructor Description IdentificationParameters(String name, String description, SearchParameters searchParameters, AnnotationParameters annotationParameters, SequenceMatchingParameters sequenceMatchingParameters, PeptideVariantsParameters peptideVariantsParameters, GeneParameters geneParameters, PsmScoringParameters psmScoringParameters, PeptideAssumptionFilter peptideAssumptionFilter, ModificationLocalizationParameters ModificationLocalizationParameters, ProteinInferenceParameters proteinInferenceParameters, IdMatchValidationParameters idValidationParameters, FractionParameters fractionParameters, FastaParameters fastaParameters)
Constructor. -
Uses of ProteinInferenceParameters in com.compomics.util.parameters.identification.advanced
Methods in com.compomics.util.parameters.identification.advanced with parameters of type ProteinInferenceParameters Modifier and Type Method Description boolean
ProteinInferenceParameters. equals(ProteinInferenceParameters otherProteinInferencePreferences)
Returns true if the objects have identical settings.