Package com.compomics.util.parameters.identification.advanced
Advanced Identification parameters.
-
Class Summary Class Description FractionParameters Settings for the handling of fractions.GeneParameters Contains methods for downloading gene and GO mappings.IdMatchValidationParameters Generic class grouping the identification matches validation preferences.ModificationLocalizationParameters This class contains the modification localization preferences.PeptideVariantsParameters Preferences for the allowed variants in peptide sequences.ProteinInferenceParameters Generic class grouping the protein inference preferences.PsmScoringParameters Generic class for peptide spectrum match scoring.SequenceMatchingParameters The sequence matching options.ValidationQcParameters This class lists the criteria used for quality control of the validated matches. -
Enum Summary Enum Description PeptideVariantsParameters.VariantType Enum indicating all three variant typesSequenceMatchingParameters.MatchingType The different types of amino acid matching.