Uses of Class
com.compomics.util.parameters.identification.advanced.PsmScoringParameters
Package | Description |
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com.compomics.util.gui.parameters.identification.advanced |
Dialogs for advanced identification parameters.
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com.compomics.util.parameters.identification |
Identification parameters.
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com.compomics.util.parameters.identification.advanced |
Advanced Identification parameters.
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Uses of PsmScoringParameters in com.compomics.util.gui.parameters.identification.advanced
Methods in com.compomics.util.gui.parameters.identification.advanced that return PsmScoringParameters Modifier and Type Method Description PsmScoringParameters
PsmScoringParametersDialog. getPsmScoringPreferences()
Returns the PSM scoring preferences as set by the user.Constructors in com.compomics.util.gui.parameters.identification.advanced with parameters of type PsmScoringParameters Constructor Description PsmScoringParametersDialog(Dialog owner, Frame parentFrame, PsmScoringParameters psmScoringPreferences, boolean editable)
Creates a new PsmScoringSettingsDialog with a dialog as owner.PsmScoringParametersDialog(Frame parentFrame, PsmScoringParameters psmScoringPreferences, boolean editable)
Creates a new PsmScoringSettingsDialog with a frame as owner. -
Uses of PsmScoringParameters in com.compomics.util.parameters.identification
Methods in com.compomics.util.parameters.identification that return PsmScoringParameters Modifier and Type Method Description PsmScoringParameters
IdentificationParameters. getPsmScoringParameters()
Returns the scoring parameters used when scoring PSMs.Methods in com.compomics.util.parameters.identification with parameters of type PsmScoringParameters Modifier and Type Method Description void
IdentificationParameters. setPsmScoringParameters(PsmScoringParameters psmScoringParameters)
Sets the scoring preferences used when scoring PSMs.Constructors in com.compomics.util.parameters.identification with parameters of type PsmScoringParameters Constructor Description IdentificationParameters(String name, String description, SearchParameters searchParameters, AnnotationParameters annotationParameters, SequenceMatchingParameters sequenceMatchingParameters, PeptideVariantsParameters peptideVariantsParameters, GeneParameters geneParameters, PsmScoringParameters psmScoringParameters, PeptideAssumptionFilter peptideAssumptionFilter, ModificationLocalizationParameters ModificationLocalizationParameters, ProteinInferenceParameters proteinInferenceParameters, IdMatchValidationParameters idValidationParameters, FractionParameters fractionParameters, FastaParameters fastaParameters)
Constructor. -
Uses of PsmScoringParameters in com.compomics.util.parameters.identification.advanced
Methods in com.compomics.util.parameters.identification.advanced with parameters of type PsmScoringParameters Modifier and Type Method Description boolean
PsmScoringParameters. equals(PsmScoringParameters otherPsmScoringPreferences)
Returns true if the objects have identical settings.