Uses of Class
com.compomics.util.experiment.identification.matches.PeptideVariantMatches
Package | Description |
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com.compomics.util.experiment.biology.proteins |
Classes related to proteins.
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com.compomics.util.experiment.identification.protein_inference |
Classes related to protein inference.
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Uses of PeptideVariantMatches in com.compomics.util.experiment.biology.proteins
Methods in com.compomics.util.experiment.biology.proteins that return types with arguments of type PeptideVariantMatches Modifier and Type Method Description HashMap<String,HashMap<Integer,PeptideVariantMatches>>
Peptide. getVariantMatches()
Returns the sequence variant matches of this peptide indexed by protein accession and peptide start.Method parameters in com.compomics.util.experiment.biology.proteins with type arguments of type PeptideVariantMatches Modifier and Type Method Description void
Peptide. setVariantMatches(HashMap<String,HashMap<Integer,PeptideVariantMatches>> variantMatches)
Sets the sequence variant matches of this peptide.Constructor parameters in com.compomics.util.experiment.biology.proteins with type arguments of type PeptideVariantMatches Constructor Description Peptide(String aSequence, ModificationMatch[] variableModifications, HashMap<String,HashMap<Integer,PeptideVariantMatches>> variantMatches, boolean sanityCheck)
Constructor for the peptide.Peptide(String aSequence, ModificationMatch[] variableModifications, HashMap<String,HashMap<Integer,PeptideVariantMatches>> variantMatches, boolean sanityCheck, double mass)
Constructor. -
Uses of PeptideVariantMatches in com.compomics.util.experiment.identification.protein_inference
Methods in com.compomics.util.experiment.identification.protein_inference that return PeptideVariantMatches Modifier and Type Method Description PeptideVariantMatches
PeptideProteinMapping. getPeptideVariantMatches()
Returns eventual variants found.Methods in com.compomics.util.experiment.identification.protein_inference that return types with arguments of type PeptideVariantMatches Modifier and Type Method Description static HashMap<String,HashMap<Integer,PeptideVariantMatches>>
PeptideProteinMapping. getVariantMatches(ArrayList<PeptideProteinMapping> peptideProteinMappings)
Returns the variant matches summarized in a map indexed by protein accession and peptide index on the protein sequence.Constructors in com.compomics.util.experiment.identification.protein_inference with parameters of type PeptideVariantMatches Constructor Description PeptideProteinMapping(String proteinAccession, String peptideSequence, int index, ModificationMatch[] modificationMatches, PeptideVariantMatches peptideVariantMatches)
Constructor.