Class PeptideInference
java.lang.Object
com.compomics.util.experiment.identification.peptide_inference.PeptideInference
public class PeptideInference extends Object
Functions related to peptide inference.
- Author:
- Marc Vaudel
-
Constructor Summary
Constructors Constructor Description PeptideInference()
-
Method Summary
Modifier and Type Method Description void
peptideInference(Identification identification, IdentificationParameters identificationParameters, SequenceProvider sequenceProvider, ModificationProvider modificationProvider, WaitingHandler waitingHandler)
Infers the PTM localization and its confidence for the best match of every spectrum.
-
Constructor Details
-
PeptideInference
public PeptideInference()
-
-
Method Details
-
peptideInference
public void peptideInference(Identification identification, IdentificationParameters identificationParameters, SequenceProvider sequenceProvider, ModificationProvider modificationProvider, WaitingHandler waitingHandler)Infers the PTM localization and its confidence for the best match of every spectrum.- Parameters:
identification
- The identification object containing the matches.identificationParameters
- The identification parameters of the project.sequenceProvider
- The protein sequence provider to use.modificationProvider
- The modification provider to use.waitingHandler
- The waiting handler displaying progress to the user.
-