Package com.compomics.util.parameters.identification.tool_specific
Parameters settings for the search algorithms.
-
Class Summary Class Description AndromedaParameters The Andromeda specific parameters.CometParameters The Comet specific parameters.DirecTagParameters The DirecTag specific parameters.MetaMorpheusParameters The MetaMorpheus specific parameters.MsAmandaParameters The MS Amanda specific parameters.MsgfParameters The MS-GF+ specific parameters.MyriMatchParameters The MyriMatch specific parameters.NovorParameters Novor specific parameters.OmssaParameters The OMSSA specific parameters.PepnovoParameters PepNovo specific parameters.PNovoParameters pNovo specific parameters.TideParameters The Tide specific parameters.XtandemParameters The X!Tandem specific parameters. -
Enum Summary Enum Description AndromedaParameters.AndromedaDecoyMode The available decoy modes.CometParameters.CometOutputFormat The available output formats.MetaMorpheusParameters.MetaMorpheusDecoyType The available decoy types.MetaMorpheusParameters.MetaMorpheusDissociationType The available dissociation types.MetaMorpheusParameters.MetaMorpheusFragmentationTerminusType The available fragmentation terminus types.MetaMorpheusParameters.MetaMorpheusInitiatorMethionineBehaviorType The available initiator methionine behavior types.MetaMorpheusParameters.MetaMorpheusMassDiffAcceptorType The available mass difference acceptor types.MetaMorpheusParameters.MetaMorpheusSearchType The available search types.MetaMorpheusParameters.MetaMorpheusToleranceType The available decoy types.