Uses of Interface
com.compomics.util.gui.parameters.identification.IdentificationAlgorithmParameter
Package | Description |
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com.compomics.util.gui.parameters.identification |
GUI classes for parameters, settings and preferences used for identification.
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com.compomics.util.gui.parameters.identification.algorithm |
Search algorithm settings dialogs.
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com.compomics.util.parameters.identification.search |
Identification parameters relative to the search.
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com.compomics.util.parameters.identification.tool_specific |
Parameters settings for the search algorithms.
|
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Uses of IdentificationAlgorithmParameter in com.compomics.util.gui.parameters.identification
Methods in com.compomics.util.gui.parameters.identification that return IdentificationAlgorithmParameter Modifier and Type Method Description IdentificationAlgorithmParameter
AlgorithmParametersDialog. getParameters()
Returns the parameters as set by the user.Methods in com.compomics.util.gui.parameters.identification with parameters of type IdentificationAlgorithmParameter Modifier and Type Method Description boolean
IdentificationAlgorithmParameter. equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
Indicates whether another identificationAlgorithmParameter has the same parameters. -
Uses of IdentificationAlgorithmParameter in com.compomics.util.gui.parameters.identification.algorithm
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Uses of IdentificationAlgorithmParameter in com.compomics.util.parameters.identification.search
Methods in com.compomics.util.parameters.identification.search that return IdentificationAlgorithmParameter Modifier and Type Method Description IdentificationAlgorithmParameter
SearchParameters. getIdentificationAlgorithmParameter(int algorithmID)
Returns the algorithm specific parameters, null if not found.Methods in com.compomics.util.parameters.identification.search that return types with arguments of type IdentificationAlgorithmParameter Modifier and Type Method Description HashMap<Integer,IdentificationAlgorithmParameter>
SearchParameters. getAlgorithmSpecificParameters()
Returns the algorithm specific parameters in a map: algorithm as indexed in the Advocate class > parameters.Methods in com.compomics.util.parameters.identification.search with parameters of type IdentificationAlgorithmParameter Modifier and Type Method Description void
SearchParameters. setIdentificationAlgorithmParameter(int algorithmID, IdentificationAlgorithmParameter identificationAlgorithmParameter)
Adds identification algorithm specific parameters. -
Uses of IdentificationAlgorithmParameter in com.compomics.util.parameters.identification.tool_specific
Classes in com.compomics.util.parameters.identification.tool_specific that implement IdentificationAlgorithmParameter Modifier and Type Class Description class
AndromedaParameters
The Andromeda specific parameters.class
CometParameters
The Comet specific parameters.class
DirecTagParameters
The DirecTag specific parameters.class
MetaMorpheusParameters
The MetaMorpheus specific parameters.class
MsAmandaParameters
The MS Amanda specific parameters.class
MsgfParameters
The MS-GF+ specific parameters.class
MyriMatchParameters
The MyriMatch specific parameters.class
NovorParameters
Novor specific parameters.class
OmssaParameters
The OMSSA specific parameters.class
PepnovoParameters
PepNovo specific parameters.class
PNovoParameters
pNovo specific parameters.class
TideParameters
The Tide specific parameters.class
XtandemParameters
The X!Tandem specific parameters.Methods in com.compomics.util.parameters.identification.tool_specific with parameters of type IdentificationAlgorithmParameter Modifier and Type Method Description boolean
AndromedaParameters. equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
boolean
CometParameters. equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
boolean
DirecTagParameters. equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
boolean
MetaMorpheusParameters. equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
boolean
MsAmandaParameters. equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
boolean
MsgfParameters. equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
boolean
MyriMatchParameters. equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
boolean
NovorParameters. equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
boolean
OmssaParameters. equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
boolean
PepnovoParameters. equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
boolean
PNovoParameters. equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
boolean
TideParameters. equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)
boolean
XtandemParameters. equals(IdentificationAlgorithmParameter identificationAlgorithmParameter)