Uses of Interface
com.compomics.util.experiment.identification.protein_sequences.digestion.SequenceIterator
Package | Description |
---|---|
com.compomics.util.experiment.identification.protein_sequences.digestion |
This package contains classes used to digest protein sequences into peptides.
|
com.compomics.util.experiment.identification.protein_sequences.digestion.iterators |
This package contains implementations of the SequenceIterator interface.
|
-
Uses of SequenceIterator in com.compomics.util.experiment.identification.protein_sequences.digestion
Methods in com.compomics.util.experiment.identification.protein_sequences.digestion that return SequenceIterator Modifier and Type Method Description SequenceIterator
IteratorFactory. getSequenceIterator(String sequence, DigestionParameters digestionPreferences, double massMin, double massMax)
Returns a sequence iterator for the given protein sequence and digestion preferences. -
Uses of SequenceIterator in com.compomics.util.experiment.identification.protein_sequences.digestion.iterators
Classes in com.compomics.util.experiment.identification.protein_sequences.digestion.iterators that implement SequenceIterator Modifier and Type Class Description class
NoDigestionCombinationIterator
Iterator for no digestion of a sequence containing amino acid combinations.class
NoDigestionIterator
Iterator for no digestion.class
SpecificSingleEnzymeCombinationIterator
Iterator for enzymatic digestion.class
SpecificSingleEnzymeIterator
Iterator for enzymatic digestion.class
UnspecificCombinationIterator
Iterator for unspecific cleavage.class
UnspecificIterator
Iterator for unspecific cleavage.