Uses of Class
com.compomics.util.experiment.biology.atoms.Atom
Package | Description |
---|---|
com.compomics.util.experiment.biology.atoms |
The atom classes.
|
com.compomics.util.experiment.biology.atoms.impl |
Atoms implementations.
|
com.compomics.util.gui.atoms |
Atoms GUI dialogs.
|
-
Uses of Atom in com.compomics.util.experiment.biology.atoms
Fields in com.compomics.util.experiment.biology.atoms declared as Atom Modifier and Type Field Description static Atom
Atom. C
The carbon atom.static Atom
Atom. Ca
The Calcium atom.static Atom
Atom. Cu
The Copper atom.static Atom
Atom. F
The Fluorine atom.static Atom
Atom. Fe
The Iron atom.static Atom
Atom. H
The hydrogen atom.static Atom
Atom. He
The helium atom.static Atom
Atom. I
The Iodine atom.static Atom
Atom. K
The Potassium atom.static Atom
Atom. Li
The phosphorus atom.static Atom
Atom. Mg
The Magnesium atom.static Atom
Atom. N
The nitrogen atom.static Atom
Atom. Na
The sodium atom.static Atom
Atom. O
The oxygen atom.static Atom
Atom. P
The phosphorus atom.static Atom
Atom. S
The sulfur atom.static Atom
Atom. Se
The selenium atom.static Atom
Atom. Zn
The Zinc atom.Methods in com.compomics.util.experiment.biology.atoms that return Atom Modifier and Type Method Description static Atom
Atom. getAtom(String shortName)
Returns the atom corresponding to the given short name.Methods in com.compomics.util.experiment.biology.atoms with parameters of type Atom Modifier and Type Method Description int
AtomChain. getOccurrence(Atom atom, Integer isotope)
Returns the occurrence of a given atom in the chain.void
AtomChain. remove(Atom atom, Integer isotope)
Removes all the occurrences of the given atom.void
AtomChain. setOccurrence(Atom atom, Integer isotope, Integer occurrence)
Sets the occurrence of a given atom.Constructors in com.compomics.util.experiment.biology.atoms with parameters of type Atom Constructor Description AtomImpl(Atom atom, Integer isotope)
Constructor. -
Uses of Atom in com.compomics.util.experiment.biology.atoms.impl
Subclasses of Atom in com.compomics.util.experiment.biology.atoms.impl Modifier and Type Class Description class
Calcium
The calcium atom.class
Carbon
Carbon.class
Copper
The copper atom.class
Fluorine
The fluorine atom.class
Helium
The helium atom.class
Hydrogen
The hydrogen atom.class
Iodine
Iodine.class
Iron
The iron atom.class
Lithium
The Lithium atom.class
Magnesium
The magnesium atom.class
Nitrogen
The nitrogen atom.class
Oxygen
The oxygen atom.class
Phosphorus
The phosphorus atom.class
Potassium
The potassium atom.class
Selenium
Selenium.class
Sodium
The sodium atom.class
Sulfur
The sulfur atom.class
Zinc
The zinc atom. -
Uses of Atom in com.compomics.util.gui.atoms
Methods in com.compomics.util.gui.atoms that return Atom Modifier and Type Method Description Atom
AtomPanel. getAtom()
Returns the currently selected atom.Constructors in com.compomics.util.gui.atoms with parameters of type Atom Constructor Description AtomPanel(AtomChainDialog atomChainDialog, Atom atom, int isotope, int occurrence, int panelIndex, boolean addOnly)
Creates a new AtomPanel.