Uses of Class
com.compomics.util.protein.Protein
Package | Description |
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com.compomics.util.nucleotide |
Useful objects for modeling and handling nucleotides.
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com.compomics.util.protein |
Classes concerning useful Objects and their operations for modeling and handling proteins.
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Uses of Protein in com.compomics.util.nucleotide
Methods in com.compomics.util.nucleotide that return Protein Modifier and Type Method Description Protein[]
NucleotideSequence. translate()
This method translates the nucleotide sequence in six reading frames. -
Uses of Protein in com.compomics.util.protein
Methods in com.compomics.util.protein that return Protein Modifier and Type Method Description Protein[]
DualEnzyme. cleave(Protein aProtein)
This method is the focus of the Enzyme instance.Protein[]
Enzyme. cleave(Protein aProtein)
This method is the focus of the Enzyme instance.Protein[]
Enzyme. cleave(Protein aProtein, int minPeptideLength, int maxPeptideLength)
This method is the focus of the Enzyme instance.Protein[]
RegExEnzyme. cleave(Protein aProtein)
Protein
Protein. getCTermTruncatedProtein(int aSize)
This method truncates the sequence for this protein on the C-terminus to the requested size.Protein
Protein. getNTermTruncatedProtein(int aSize)
This method truncates the sequence for this protein on the N-terminus to the requested size.Protein[]
DualEnzyme. oldCleave(Protein aProtein)
This cleave method will process sequence XDYRZ solely into YR peptides.Methods in com.compomics.util.protein with parameters of type Protein Modifier and Type Method Description Protein[]
DualEnzyme. cleave(Protein aProtein)
This method is the focus of the Enzyme instance.Protein[]
Enzyme. cleave(Protein aProtein)
This method is the focus of the Enzyme instance.Protein[]
Enzyme. cleave(Protein aProtein, int minPeptideLength, int maxPeptideLength)
This method is the focus of the Enzyme instance.Protein[]
RegExEnzyme. cleave(Protein aProtein)
Protein[]
DualEnzyme. oldCleave(Protein aProtein)
This cleave method will process sequence XDYRZ solely into YR peptides.