Uses of Class
com.compomics.util.experiment.mass_spectrometry.indexes.SpectrumIndex
Package | Description |
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com.compomics.util.experiment.identification.spectrum_annotation.simple_annotators |
This package contains implementations of the SimpleAnnotator allowing the annotation of specific sets of ions.
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com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators |
This package contains implementations of the SpectrumAnnotator allowing the annotation of all ions.
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Uses of SpectrumIndex in com.compomics.util.experiment.identification.spectrum_annotation.simple_annotators
Methods in com.compomics.util.experiment.identification.spectrum_annotation.simple_annotators with parameters of type SpectrumIndex Modifier and Type Method Description ArrayList<IonMatch>
FragmentAnnotator. getIonMatches(SpectrumIndex spectrumIndex, int peptideCharge)
Returns the ions matched in the given spectrum at the given charge.ArrayList<IonMatch>
FragmentAnnotatorNL. getIonMatches(SpectrumIndex spectrumIndex, int peptideCharge)
Returns the ions matched in the given spectrum at the given charge.ArrayList<IonMatch>
ImmoniumIonAnnotator. getIonMatches(SpectrumIndex spectrumIndex)
Returns the ions matched in the given spectrum.ArrayList<IonMatch>
PrecursorAnnotator. getIonMatches(SpectrumIndex spectrumIndex, int peptideCharge, int isotopeMax)
Returns the ions matched in the given spectrum at the given charge.ArrayList<IonMatch>
ReporterIonAnnotator. getIonMatches(SpectrumIndex spectrumIndex)
Returns the ions matched in the given spectrum. -
Uses of SpectrumIndex in com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators
Methods in com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators with parameters of type SpectrumIndex Modifier and Type Method Description ArrayList<IonMatch>
SimplePeptideAnnotator. getIonMatches(SpectrumIndex spectrumIndex, int peptideCharge, int precursorIsotopeMax)
Returns the ion matches for the given spectrum.