Uses of Package
com.compomics.util.experiment.io.biology.protein
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Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.cli.fasta Class Description FastaParameters The parameters used to parse a FASTA file. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.biology.genes Class Description FastaSummary This class parses a FASTA file and gathers summary statistics.ProteinDetailsProvider Interface for a class able to provide metadata on proteins.SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.biology.ions Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.biology.proteins Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.identification.features Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.identification.filtering Class Description ProteinDetailsProvider Interface for a class able to provide metadata on proteins.SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.identification.modification Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.identification.modification.mapping Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.identification.modification.scores Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_generation Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.identification.peptide_inference Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.identification.protein_inference Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.identification.protein_inference.fm_index Class Description FastaParameters The parameters used to parse a FASTA file.Header This class represents the header for a Protein instance.ProteinDatabase Enum of the supported protein databases.ProteinDetailsProvider Interface for a class able to provide metadata on proteins.SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.identification.protein_sequences Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.identification.psm_scoring Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.identification.psm_scoring.psm_scores Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.identification.spectrum_annotation Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.identification.utils Class Description FastaParameters The parameters used to parse a FASTA file.SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.io.biology.protein Class Description FastaParameters The parameters used to parse a FASTA file.FastaSummary This class parses a FASTA file and gathers summary statistics.Header This class represents the header for a Protein instance.ProteinDatabase Enum of the supported protein databases. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.io.biology.protein.converters Class Description FastaParameters The parameters used to parse a FASTA file.FastaSummary This class parses a FASTA file and gathers summary statistics. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.io.biology.protein.iterators Class Description Header This class represents the header for a Protein instance.ProteinIterator Interface for a protein iterator. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.io.identification.writers Class Description FastaSummary This class parses a FASTA file and gathers summary statistics.ProteinDetailsProvider Interface for a class able to provide metadata on proteins.SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.experiment.quantification.spectrumcounting Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.gui.genes Class Description ProteinDetailsProvider Interface for a class able to provide metadata on proteins. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.gui.modification Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.gui.parameters.identification.advanced Class Description FastaSummary This class parses a FASTA file and gathers summary statistics. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.gui.parameters.identification.search Class Description FastaParameters The parameters used to parse a FASTA file. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.gui.protein Class Description FastaParameters The parameters used to parse a FASTA file. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.gui.spectrum Class Description SequenceProvider Interface for a class able to retrieve the sequence of a given protein. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.nucleotide Class Description Header This class represents the header for a Protein instance. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.parameters.identification Class Description FastaParameters The parameters used to parse a FASTA file. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.parameters.identification.advanced Class Description FastaSummary This class parses a FASTA file and gathers summary statistics. -
Classes in com.compomics.util.experiment.io.biology.protein used by com.compomics.util.protein Class Description Header This class represents the header for a Protein instance.