Uses of Class
com.compomics.util.parameters.identification.advanced.ModificationLocalizationParameters
Package | Description |
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com.compomics.util.gui.parameters.identification.advanced |
Dialogs for advanced identification parameters.
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com.compomics.util.parameters.identification |
Identification parameters.
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com.compomics.util.parameters.identification.advanced |
Advanced Identification parameters.
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Uses of ModificationLocalizationParameters in com.compomics.util.gui.parameters.identification.advanced
Methods in com.compomics.util.gui.parameters.identification.advanced that return ModificationLocalizationParameters Modifier and Type Method Description ModificationLocalizationParameters
ModificationLocalizationParametersDialog. getPtmScoringPreferences()
Returns the PTM scoring preferences as set by the user.Constructors in com.compomics.util.gui.parameters.identification.advanced with parameters of type ModificationLocalizationParameters Constructor Description ModificationLocalizationParametersDialog(Dialog owner, Frame parentFrame, ModificationLocalizationParameters ptmScoringPreferences, boolean editable)
Creates a new PTMLocalizationParametersDialog with a dialog as owner.ModificationLocalizationParametersDialog(Frame parentFrame, ModificationLocalizationParameters ptmScoringPreferences, boolean editable)
Creates a new PTMLocalizationParametersDialog with a frame as owner. -
Uses of ModificationLocalizationParameters in com.compomics.util.parameters.identification
Methods in com.compomics.util.parameters.identification that return ModificationLocalizationParameters Modifier and Type Method Description ModificationLocalizationParameters
IdentificationParameters. getModificationLocalizationParameters()
Returns the modification localization scoring parameters.Methods in com.compomics.util.parameters.identification with parameters of type ModificationLocalizationParameters Modifier and Type Method Description void
IdentificationParameters. setModificationLocalizationParameters(ModificationLocalizationParameters modificationLocalizationParameters)
Sets the modification localization parameters.Constructors in com.compomics.util.parameters.identification with parameters of type ModificationLocalizationParameters Constructor Description IdentificationParameters(String name, String description, SearchParameters searchParameters, AnnotationParameters annotationParameters, SequenceMatchingParameters sequenceMatchingParameters, PeptideVariantsParameters peptideVariantsParameters, GeneParameters geneParameters, PsmScoringParameters psmScoringParameters, PeptideAssumptionFilter peptideAssumptionFilter, ModificationLocalizationParameters ModificationLocalizationParameters, ProteinInferenceParameters proteinInferenceParameters, IdMatchValidationParameters idValidationParameters, FractionParameters fractionParameters, FastaParameters fastaParameters)
Constructor. -
Uses of ModificationLocalizationParameters in com.compomics.util.parameters.identification.advanced
Methods in com.compomics.util.parameters.identification.advanced with parameters of type ModificationLocalizationParameters Modifier and Type Method Description boolean
ModificationLocalizationParameters. equals(ModificationLocalizationParameters otherParameters)
Returns true if the objects have identical settings.