Enum ProteoWizardMsFormat
java.lang.Object
java.lang.Enum<ProteoWizardMsFormat>
com.compomics.util.experiment.mass_spectrometry.proteowizard.ProteoWizardMsFormat
- All Implemented Interfaces:
Serializable
,Comparable<ProteoWizardMsFormat>
,java.lang.constant.Constable
public enum ProteoWizardMsFormat extends Enum<ProteoWizardMsFormat>
The mass spectrometry formats supported by ProteoWizard.
- Author:
- Marc Vaudel, Harald Barsnes
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Nested Class Summary
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Enum Constant Summary
Enum Constants Enum Constant Description baf
Bruker FID format.bms2
Binary bms2 format.cms1
cms1 format.cms2
cms2 format.d
Agilent/Bruker d format.fid
Bruker FID format.mgf
Mascot generic format.ms1
ms1 format.ms2
ms2 format.mz5
Implementation of the PSI mzML ontology that is based on HDF5.mzML
mzML generic PSI format.mzXML
mzXML format.raw
Thermo/Waters raw format.wiff
Applied Biosystems wiff format.yep
Bruker FID format. -
Field Summary
Fields Modifier and Type Field Description String
commandLineOption
The command line option name.String
description
A brief description of the format.String
fileNameEnding
The file name ending of the format.int
index
The index of the format.String
name
The name of the format.boolean
outputFormat
Boolean indicating if this in a format that can be used as output.boolean
rawFormat
Boolean indicating if this in a format for raw data, false means that it is a peak list format. -
Method Summary
Modifier and Type Method Description static ProteoWizardMsFormat[]
getDataFormats(Boolean raw, Boolean outputFormat)
Returns a list of formats.String
toString()
static ProteoWizardMsFormat
valueOf(String name)
Returns the enum constant of this type with the specified name.static ProteoWizardMsFormat[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Details
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mgf
Mascot generic format. -
ms1
ms1 format. -
ms2
ms2 format. -
cms1
cms1 format. -
cms2
cms2 format. -
bms2
Binary bms2 format. -
mzML
mzML generic PSI format. -
mzXML
mzXML format. -
mz5
Implementation of the PSI mzML ontology that is based on HDF5. -
raw
Thermo/Waters raw format. -
d
Agilent/Bruker d format. -
fid
Bruker FID format. -
yep
Bruker FID format. -
baf
Bruker FID format. -
wiff
Applied Biosystems wiff format.
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Field Details
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index
public final int indexThe index of the format. -
commandLineOption
The command line option name. -
name
The name of the format. -
description
A brief description of the format. -
rawFormat
public final boolean rawFormatBoolean indicating if this in a format for raw data, false means that it is a peak list format. -
fileNameEnding
The file name ending of the format. -
outputFormat
public final boolean outputFormatBoolean indicating if this in a format that can be used as output.
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Method Details
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values
Returns an array containing the constants of this enum type, in the order they are declared.- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null
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toString
- Overrides:
toString
in classEnum<ProteoWizardMsFormat>
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getDataFormats
Returns a list of formats.- Parameters:
raw
- get raw formats, null returns bothoutputFormat
- get output formats, null return both- Returns:
- the list formats
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