java.lang.Object
com.compomics.util.experiment.identification.peptide_inference.PeptideInference

public class PeptideInference
extends Object
Functions related to peptide inference.
Author:
Marc Vaudel
  • Constructor Details

  • Method Details

    • peptideInference

      public void peptideInference​(Identification identification, IdentificationParameters identificationParameters, SequenceProvider sequenceProvider, ModificationProvider modificationProvider, WaitingHandler waitingHandler)
      Infers the PTM localization and its confidence for the best match of every spectrum.
      Parameters:
      identification - The identification object containing the matches.
      identificationParameters - The identification parameters of the project.
      sequenceProvider - The protein sequence provider to use.
      modificationProvider - The modification provider to use.
      waitingHandler - The waiting handler displaying progress to the user.