Uses of Class
com.compomics.util.experiment.io.biology.protein.Header
Package | Description |
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com.compomics.util.experiment.identification.protein_inference.fm_index |
Protein sequence database indexing classes based on Burrows-Wheeler transform.
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com.compomics.util.experiment.io.biology.protein |
Experiment IO classes for biological resources.
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com.compomics.util.experiment.io.biology.protein.iterators |
Fasta file iterators.
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com.compomics.util.nucleotide |
Useful objects for modeling and handling nucleotides.
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com.compomics.util.protein |
Classes concerning useful Objects and their operations for modeling and handling proteins.
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Uses of Header in com.compomics.util.experiment.identification.protein_inference.fm_index
Methods in com.compomics.util.experiment.identification.protein_inference.fm_index that return Header Modifier and Type Method Description Header
AccessionMetaData. getHeader()
Returns the parsed header. -
Uses of Header in com.compomics.util.experiment.io.biology.protein
Methods in com.compomics.util.experiment.io.biology.protein that return Header Modifier and Type Method Description static Header
Header. parseFromFASTA(String aFASTAHeader)
Factory method that constructs a Header instance based on a FASTA header line. -
Uses of Header in com.compomics.util.experiment.io.biology.protein.iterators
Methods in com.compomics.util.experiment.io.biology.protein.iterators that return Header Modifier and Type Method Description Header
FastaIterator. getLastHeader()
Returns the header corresponding to the last protein. -
Uses of Header in com.compomics.util.nucleotide
Methods in com.compomics.util.nucleotide that return Header Modifier and Type Method Description Header
NucleotideSequence. getHeader()
This method reports on the nucleotide header.Methods in com.compomics.util.nucleotide with parameters of type Header Modifier and Type Method Description void
NucleotideSequence. setHeader(Header aHeader)
This method sets the header.Constructors in com.compomics.util.nucleotide with parameters of type Header Constructor Description NucleotideSequence(Header aHeader, NucleotideSequenceImpl aSequence)
This constructor allows the passing of a Header, as well as an AASequenceImpl for this Protein. -
Uses of Header in com.compomics.util.protein
Methods in com.compomics.util.protein that return Header Modifier and Type Method Description Header
Protein. getHeader()
This method reports on the header for the current protein.Methods in com.compomics.util.protein with parameters of type Header Modifier and Type Method Description void
Protein. setHeader(Header aHeader)
Simple setter for the header.Constructors in com.compomics.util.protein with parameters of type Header Constructor Description Protein(Header aHeader, AASequenceImpl aSequence)
This constructor allows the passing of a Header, as well as an AASequenceImpl for this Protein.Protein(Header aHeader, AASequenceImpl aSequence, boolean aTruncated, int aTruncationPosition)
This constructor allows the passing of a Header, as well as an AASequenceImpl for this Protein.