Package com.compomics.util.protein
Classes concerning useful Objects and their operations for modeling and handling proteins.
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Class Summary Class Description AASequenceImpl This class represents a sequence for a protein or peptide.DualEnzyme This class implements an enzyme with a dual specificity; the N-terminus of a resultant peptide will have certain residue, the C-terminus will have another, eg.Enzyme This class implements the functionality for an Enzyme.ModificationFactory This class can be used to generate a Modification instance from a code or title.ModificationImplementation This class implements a specific Modification.ModificationTemplate This class holds a template for a Modification, meaning that it contains all shared characteristics of a Modification, but not the instance-specific one.MolecularFormula This class represents the molecular formula.Protein This class implements the behaviour for a Protein instance.RegExEnzyme This class implements the functionality of an Enzyme by simulating digestion based on a regular expression.