Uses of Class
com.compomics.util.experiment.biology.aminoacids.AminoAcid.Property
Package | Description |
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com.compomics.util.experiment.biology.aminoacids |
The amino acid classes.
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com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration |
This package contains the classes needed to configure the ms2pip features.
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com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features |
This package contains features implemented for ms2pip.
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com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic |
This package contains generic features implemented for ms2pip.
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Uses of AminoAcid.Property in com.compomics.util.experiment.biology.aminoacids
Methods in com.compomics.util.experiment.biology.aminoacids that return AminoAcid.Property Modifier and Type Method Description AminoAcid.Property
AminoAcid.Property. getProperty(int index)
Returns the property at index.static AminoAcid.Property
AminoAcid.Property. valueOf(String name)
Returns the enum constant of this type with the specified name.static AminoAcid.Property[]
AminoAcid.Property. values()
Returns an array containing the constants of this enum type, in the order they are declared.Methods in com.compomics.util.experiment.biology.aminoacids with parameters of type AminoAcid.Property Modifier and Type Method Description double
AminoAcid. getProperty(AminoAcid.Property property)
Returns a property of the amino acid. -
Uses of AminoAcid.Property in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration
Methods in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration that return AminoAcid.Property Modifier and Type Method Description AminoAcid.Property[]
MultipleAAPropertyFeature. getAminoAcidProperties()
Returns the amino acid properties to consider.AminoAcid.Property
SingleAAPropertyFeature. getAminoAcidProperty()
Returns the amino acid property to consider.Methods in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration with parameters of type AminoAcid.Property Modifier and Type Method Description void
SingleAAPropertyFeature. setAminoAcidProperty(AminoAcid.Property aminoAcidProperty)
Sets the amino acid property to consider. -
Uses of AminoAcid.Property in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features
Methods in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features that return AminoAcid.Property Modifier and Type Method Description AminoAcid.Property[]
AAPropertyRelationshipFeature. getAminoAcidProperties()
Constructors in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features with parameters of type AminoAcid.Property Constructor Description AAPropertyFeatureAbsolute(int aaIndex, AminoAcid.Property property)
Constructor.AAPropertyFeatureRelative(int aaIndex, AminoAcid.Property property)
Constructor.ComplementaryIonAminoAcidFeature(AminoAcid.Property aminoAcidProperty, AASequenceFeature.Function function)
Constructor.ForwardIonAminoAcidFeature(AminoAcid.Property aminoAcidProperty, AASequenceFeature.Function function)
Constructor.PeptideAminoAcidFeature(AminoAcid.Property aminoAcidProperty, AASequenceFeature.Function function)
Constructor. -
Uses of AminoAcid.Property in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic
Fields in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic declared as AminoAcid.Property Modifier and Type Field Description protected AminoAcid.Property
AAPropertyFeature. aminoAcidProperty
The property of the amino acids to consider.protected AminoAcid.Property
AASequenceFeature. aminoAcidProperty
The property of the amino acids to consider.Methods in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic that return AminoAcid.Property Modifier and Type Method Description AminoAcid.Property
AAPropertyFeature. getAminoAcidProperty()
AminoAcid.Property
AASequenceFeature. getAminoAcidProperty()
Methods in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic with parameters of type AminoAcid.Property Modifier and Type Method Description void
AAPropertyFeature. setAminoAcidProperty(AminoAcid.Property aminoAcidProperty)
void
AASequenceFeature. setAminoAcidProperty(AminoAcid.Property aminoAcidProperty)