Class AlignmentBlock

java.lang.Object
com.compomics.util.pdbfinder.das.readers.AlignmentBlock

public class AlignmentBlock
extends Object
AlignmentBlock.
Author:
Niklaas Colaert
  • Constructor Details

    • AlignmentBlock

      public AlignmentBlock()
      Empty default constructor
    • AlignmentBlock

      public AlignmentBlock​(int aPdbStart, int aPdbEnd, int aSpStart, int aSpEnd, String aPdbAccession, String aSpAccession)
      Constructor.
      Parameters:
      aPdbStart - the PDB start index
      aPdbEnd - the PDB end index
      aSpStart - the UniProt start index
      aSpEnd - the UniProt end index
      aPdbAccession - the PDB accession
      aSpAccession - the UniProt accession
  • Method Details

    • getPdbStart

      public int getPdbStart()
      Returns the PDB start.
      Returns:
      the PDB start
    • getPdbEnd

      public int getPdbEnd()
      Returns the PDB end.
      Returns:
      the PDB end
    • getSpStart

      public int getSpStart()
      Returns the SP start.
      Returns:
      the SP start
    • getSpEnd

      public int getSpEnd()
      Returns the SP end.
      Returns:
      the SP end
    • getPdbAccession

      public String getPdbAccession()
      Returns the PDB accession.
      Returns:
      the PDB accession
    • getSpAccession

      public String getSpAccession()
      Returns the SP accession.
      Returns:
      the SP accession
    • getDifference

      public int getDifference()
      Returns the difference.
      Returns:
      the difference