Uses of Interface
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature
Package | Description |
---|---|
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration |
This package contains the classes needed to configure the ms2pip features.
|
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features |
This package contains features implemented for ms2pip.
|
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic |
This package contains generic features implemented for ms2pip.
|
-
Uses of Ms2pipFeature in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration
Methods in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration that return Ms2pipFeature Modifier and Type Method Description Ms2pipFeature[]
FeaturesMap. getFeatures(String category)
Returns the features in the map for the given category.Methods in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration with parameters of type Ms2pipFeature Modifier and Type Method Description void
FeaturesMap. addFeature(Ms2pipFeature ms2pipFeature)
Adds a feature to the map. -
Uses of Ms2pipFeature in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features
Classes in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features that implement Ms2pipFeature Modifier and Type Class Description class
AAIdentityFeatureAbsolute
An amino acid identity feature at a fixed position on the peptide sequence.class
AAIdentityFeatureRelative
An amino acid identity feature at a position relative to the end of an ion on the peptide sequence.class
AAPropertyFeatureAbsolute
An amino acid property feature at a fixed position on the peptide sequence.class
AAPropertyFeatureRelative
An amino acid property feature at a position relative to the end of an ion on the peptide sequence.class
AAPropertyRelationshipFeature
Feature based on the relationship between two amino acid features.class
ComplementaryIonAminoAcidFeature
Feature based on the amino acid properties of the complementary ion.class
ComplementaryIonFeature
Feature based on a property of the complementary ion.class
ForwardIonAminoAcidFeature
Feature based on the amino acid properties of the forward ion.class
ForwardIonFeature
Feature based on a property of the forward ion.class
ModificationFeature
Feature based on the modification status of an amino acid.class
PeptideAminoAcidFeature
Feature based on the amino acid properties of a peptide.class
PeptideFeature
Feature based on a peptide property. -
Uses of Ms2pipFeature in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic
Classes in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic that implement Ms2pipFeature Modifier and Type Class Description class
AAIdentityFeature
Feature based on an amino acid identity.class
AAPropertyFeature
Feature based on an amino acid property.class
AASequenceFeature
Feature based on the amino acid properties of a sequence.class
IonFeature
Feature based on a property of an ion.