Uses of Class
com.compomics.util.experiment.biology.ions.PeptideFragmentIon

Packages that use PeptideFragmentIon

Package	Description
com.compomics.util.experiment.identification.ptm

Uses of PeptideFragmentIon in com.compomics.util.experiment.identification.ptm

Methods in com.compomics.util.experiment.identification.ptm that return types with arguments of type PeptideFragmentIon

Modifier and Type	Method and Description
static java.util.HashMap<PeptideFragmentIon,java.util.ArrayList<IonMatch>>	PtmtableContent.getPTMPlotData(Peptide peptide, PTM ptm, int nPTM, MSnSpectrum spectrum, java.util.HashMap<Ion.IonType,java.util.ArrayList<java.lang.Integer>> iontypes, NeutralLossesMap neutralLosses, java.util.ArrayList<java.lang.Integer> charges, int precursorCharge, double mzTolerance, double intensityLimit) Returns the PTM plot series in the JFreechart format for one PSM.