com.compomics.util.experiment.massspectrometry

Class MS1Spectrum

java.lang.Object

com.compomics.util.experiment.personalization.ExperimentObject

com.compomics.util.experiment.massspectrometry.Spectrum

com.compomics.util.experiment.massspectrometry.MS1Spectrum

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable

public class MS1Spectrum
extends Spectrum

This class models an MS1 spectrum. Created by IntelliJ IDEA. User: Marc Date: Jun 18, 2010 Time: 9:04:58 AM

See Also:

Serialized Form

Field Summary

Fields inherited from class com.compomics.util.experiment.massspectrometry.Spectrum

fileName, level, peakList, scanNumber, scanStartTime, SPECTRUM_KEY_SPLITTER, spectrumTitle

Constructor Summary

Constructors

Constructor and Description
MS1Spectrum() Constructor for an MS1 spectrum
MS1Spectrum(java.lang.String fileName, java.lang.String spectrumTitle, double scanStartTime, java.util.HashMap<java.lang.Double,Peak> spectrum) constructor for an MS1 spectrum

Method Summary

Methods

Modifier and Type	Method and Description
void	removePeakList() This method will remove the peak list in order to reduce memory consumption of the model.

Methods inherited from class com.compomics.util.experiment.massspectrometry.Spectrum

addPeak, getDesignaledPeakList, getFileName, getIntensityLimit, getIntensityValuesAsArray, getJFreePeakList, getLevel, getMaxIntensity, getMaxMz, getMinMz, getMzAndIntensityAsArray, getMzValuesAsArray, getOrderedMzValues, getPeakList, getPeakMap, getPeaksAboveIntensityThreshold, getRecalibratedPeakList, getScanNumber, getScanStartTime, getSpectrumFile, getSpectrumKey, getSpectrumKey, getSpectrumTitle, getSpectrumTitle, getSubSpectrum, getTotalIntensity, setPeakList, setPeaks, setScanNumber, setScanStartTime, setSpectrumTitle

Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject

addUrParam, getParameterKey, getUrParam

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MS1Spectrum

public MS1Spectrum()

Constructor for an MS1 spectrum

MS1Spectrum

public MS1Spectrum(java.lang.String fileName,
           java.lang.String spectrumTitle,
           double scanStartTime,
           java.util.HashMap<java.lang.Double,Peak> spectrum)

constructor for an MS1 spectrum

Parameters:

spectrumTitle - title of the spectrum

spectrum - Set of peaks

fileName - name of the file

scanStartTime - scan start time

Method Detail

removePeakList

public void removePeakList()

Description copied from class: Spectrum

This method will remove the peak list in order to reduce memory consumption of the model.

Overrides:

removePeakList in class Spectrum