com.compomics.util.experiment.quantification.reporterion

Class ReporterMethod

java.lang.Object

com.compomics.util.experiment.quantification.reporterion.ReporterMethod

public class ReporterMethod
extends java.lang.Object

This class contains information relative to a reporter quantification method.

Author:

Marc Vaudel Date: Sep 29, 2010 Time: 5:52:30 PM

Constructor Summary

Constructors

Constructor and Description
ReporterMethod(java.lang.String name, java.util.ArrayList<ReporterIon> reporterIons, java.util.ArrayList<CorrectionFactor> correctionFactors) Constructor for a reporter method.

Method Summary

Methods

Modifier and Type	Method and Description
java.util.ArrayList<CorrectionFactor>	getCorrectionFactors() Returns the correction factors corresponding to the reporter ions.
java.lang.String	getName() Returns the name of the method.
ReporterIon	getReporterIon(int reporterIonIndex) Returns the reporter ion indexed by the given index, null if not found.
java.util.ArrayList<java.lang.Integer>	getReporterIonIndexes() Returns a list containing the indexes of the reporter ions.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReporterMethod

public ReporterMethod(java.lang.String name,
              java.util.ArrayList<ReporterIon> reporterIons,
              java.util.ArrayList<CorrectionFactor> correctionFactors)

Constructor for a reporter method.

Parameters:

name - the name of the method

reporterIons - the reporter ions used

correctionFactors - the correction factors corresponding to the reporter ions

Method Detail

getReporterIonIndexes

public java.util.ArrayList<java.lang.Integer> getReporterIonIndexes()

Returns a list containing the indexes of the reporter ions.

Returns:

a list containing the indexes of the reporter ions

getReporterIon

public ReporterIon getReporterIon(int reporterIonIndex)

Returns the reporter ion indexed by the given index, null if not found.

Parameters:

reporterIonIndex - the index of the reporter ion

Returns:

the reporter ion of interest

getCorrectionFactors

public java.util.ArrayList<CorrectionFactor> getCorrectionFactors()

Returns the correction factors corresponding to the reporter ions.

Returns:

the correction factors corresponding to the reporter ions

getName

public java.lang.String getName()

Returns the name of the method.

Returns:

the name of the method