com.compomics.util.gui

Class VennDiagramDialog

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

com.compomics.util.gui.VennDiagramDialog

All Implemented Interfaces:

ExportGraphicsDialogParent, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants

public class VennDiagramDialog
extends javax.swing.JDialog
implements ExportGraphicsDialogParent

A dialog for creating and displaying Venn diagrams. (Work in progress...)

Author:

Harald Barsnes

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	VennDiagramDialog.VennDiagramType The supported Venn diagram types.

Nested classes/interfaces inherited from class javax.swing.JDialog

javax.swing.JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

java.awt.Dialog.AccessibleAWTDialog, java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
VennDiagramDialog(java.awt.Frame dialogParent, java.awt.Image normalIcon, java.awt.Image waitingIcon, boolean modal) Creates a new XYPlottingDialog.

Method Summary

Methods

Modifier and Type	Method and Description
org.jfree.chart.ChartPanel	getChartPanel() Returns the chart panel.
VennDiagramDialog.VennDiagramType	getCurrentVennDiagramType() Returns the current Venn diagram type.
java.lang.String	getDefaultExportFolder() Returns the default folder used for the export.
java.util.ArrayList<org.jfree.chart.entity.ChartEntity>	getEntitiesForPoint(int viewX, int viewY) Returns a list of the entities at the given x, y view location.
java.util.HashMap<java.lang.String,java.lang.String>	getGroupNames() Returns a standard map of the group names.
no.uib.jsparklines.data.XYDataPoint	getLegendDatasetAFourWay() Returns the legend location of dataset A in a four way Venn diagram.
no.uib.jsparklines.data.XYDataPoint	getLegendDatasetAThreeWay() Returns the legend location of Dataset A in a three way Venn diagram.
no.uib.jsparklines.data.XYDataPoint	getLegendDatasetBFourWay() Returns the legend location of dataset B in a four way Venn diagram.
no.uib.jsparklines.data.XYDataPoint	getLegendDatasetBThreeWay() Returns the legend location of dataset B in a three way Venn diagram.
no.uib.jsparklines.data.XYDataPoint	getLegendDatasetCFourWay() Returns the legend location of dataset C in a four way Venn diagram.
no.uib.jsparklines.data.XYDataPoint	getLegendDatasetCThreeWay() Returns the legend location of dataset C in a three way Venn diagram.
no.uib.jsparklines.data.XYDataPoint	getLegendDatasetDFourWay() Returns the legend location of dataset D in a four way Venn diagram.
java.awt.Image	getNormalIcon() Returns the normal icon.
java.awt.Image	getWaitingIcon() Returns the waiting icon.
static void	main(java.lang.String[] args) Main method.
void	mouseClickedInChart(org.jfree.chart.ChartMouseEvent event) Handles mouse clicks in the chart panel.
void	mouseMovedInChart(org.jfree.chart.ChartMouseEvent event) Handles mouse movements in the chart panel.
void	setLegendDatasetAFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetAFourWay) Set the legend location of Dataset A in a four way Venn diagram.
void	setLegendDatasetAThreeWay(no.uib.jsparklines.data.XYDataPoint legendDatasetAThreeWay) Set the legend location of Dataset A in a three way Venn diagram.
void	setLegendDatasetBFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetBFourWay) Set the legend location of Dataset B in a four way Venn diagram.
void	setLegendDatasetBThreeWay(no.uib.jsparklines.data.XYDataPoint legendDatasetBThreeWay) Set the legend location of Dataset B in a three way Venn diagram.
void	setLegendDatasetCFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetCFourWay) Set the legend location of Dataset C in a four way Venn diagram.
void	setLegendDatasetCThreeWay(no.uib.jsparklines.data.XYDataPoint legendDatasetCThreeWay) Set the legend location of Dataset C in a three way Venn diagram.
void	setLegendDatasetDFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetDFourWay) Set the legend location of Dataset D in a four way Venn diagram.
void	setSelectedExportFolder(java.lang.String selectedFolder) Set the default folder to use for exporting the graphics.
void	updatePlot() Update the plot.
java.util.HashMap<java.lang.String,java.util.ArrayList<java.lang.String>>	vennDiagramMaker(java.util.ArrayList<java.lang.String> groupA, java.util.ArrayList<java.lang.String> groupB, java.util.ArrayList<java.lang.String> groupC, java.util.ArrayList<java.lang.String> groupD) Create the Venn diagram groupings based on the provided data.

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, setVisible, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

VennDiagramDialog

public VennDiagramDialog(java.awt.Frame dialogParent,
                 java.awt.Image normalIcon,
                 java.awt.Image waitingIcon,
                 boolean modal)

Creates a new XYPlottingDialog.

Parameters:

dialogParent - the dialog parent

modal -

normalIcon - the normal icon for the parent dialog

waitingIcon - the icon to use when busy

Method Detail

main

public static void main(java.lang.String[] args)

Main method. For testing purposes only.

Parameters:

args -

updatePlot

public void updatePlot()

Update the plot.

mouseClickedInChart

public void mouseClickedInChart(org.jfree.chart.ChartMouseEvent event)

Handles mouse clicks in the chart panel.

Parameters:

event -

mouseMovedInChart

public void mouseMovedInChart(org.jfree.chart.ChartMouseEvent event)

Handles mouse movements in the chart panel.

Parameters:

event -

getEntitiesForPoint

public java.util.ArrayList<org.jfree.chart.entity.ChartEntity> getEntitiesForPoint(int viewX,
                                                                          int viewY)

Returns a list of the entities at the given x, y view location.

Parameters:

viewX - the x location

viewY - the y location

Returns:

a list of the entities

setSelectedExportFolder

public void setSelectedExportFolder(java.lang.String selectedFolder)

Description copied from interface: ExportGraphicsDialogParent

Set the default folder to use for exporting the graphics. Can be changed by the user later.

Specified by:

setSelectedExportFolder in interface ExportGraphicsDialogParent

Parameters:

selectedFolder - the default folder

getDefaultExportFolder

public java.lang.String getDefaultExportFolder()

Description copied from interface: ExportGraphicsDialogParent

Returns the default folder used for the export.

Specified by:

getDefaultExportFolder in interface ExportGraphicsDialogParent

Returns:

the default folder used for the export

vennDiagramMaker

public java.util.HashMap<java.lang.String,java.util.ArrayList<java.lang.String>> vennDiagramMaker(java.util.ArrayList<java.lang.String> groupA,
                                                                                         java.util.ArrayList<java.lang.String> groupB,
                                                                                         java.util.ArrayList<java.lang.String> groupC,
                                                                                         java.util.ArrayList<java.lang.String> groupD)

Create the Venn diagram groupings based on the provided data.

Parameters:

groupA -

groupB -

groupC -

groupD -

Returns:

the Venn diagram groupings

getNormalIcon

public java.awt.Image getNormalIcon()

Description copied from interface: ExportGraphicsDialogParent

Returns the normal icon.

Specified by:

getNormalIcon in interface ExportGraphicsDialogParent

Returns:

the normal icon

getWaitingIcon

public java.awt.Image getWaitingIcon()

Description copied from interface: ExportGraphicsDialogParent

Returns the waiting icon.

Specified by:

getWaitingIcon in interface ExportGraphicsDialogParent

Returns:

the waiting icon

getChartPanel

public org.jfree.chart.ChartPanel getChartPanel()

Returns the chart panel.

Returns:

the chart panel

getGroupNames

public java.util.HashMap<java.lang.String,java.lang.String> getGroupNames()

Returns a standard map of the group names. Keys: a, b, c and d.

Returns:

a standard map of the group names

getLegendDatasetAThreeWay

public no.uib.jsparklines.data.XYDataPoint getLegendDatasetAThreeWay()

Returns the legend location of Dataset A in a three way Venn diagram.

Returns:

the legendDatasetAThreeWay

setLegendDatasetAThreeWay

public void setLegendDatasetAThreeWay(no.uib.jsparklines.data.XYDataPoint legendDatasetAThreeWay)

Set the legend location of Dataset A in a three way Venn diagram.

Parameters:

legendDatasetAThreeWay - the legendDatasetAThreeWay to set

getLegendDatasetBThreeWay

public no.uib.jsparklines.data.XYDataPoint getLegendDatasetBThreeWay()

Returns the legend location of dataset B in a three way Venn diagram.

Returns:

the legendDatasetBThreeWay

setLegendDatasetBThreeWay

public void setLegendDatasetBThreeWay(no.uib.jsparklines.data.XYDataPoint legendDatasetBThreeWay)

Set the legend location of Dataset B in a three way Venn diagram.

Parameters:

legendDatasetBThreeWay - the legendDatasetBThreeWay to set

getLegendDatasetCThreeWay

public no.uib.jsparklines.data.XYDataPoint getLegendDatasetCThreeWay()

Returns the legend location of dataset C in a three way Venn diagram.

Returns:

the legendDatasetCThreeWay

setLegendDatasetCThreeWay

public void setLegendDatasetCThreeWay(no.uib.jsparklines.data.XYDataPoint legendDatasetCThreeWay)

Set the legend location of Dataset C in a three way Venn diagram.

Parameters:

legendDatasetCThreeWay - the legendDatasetCThreeWay to set

getLegendDatasetAFourWay

public no.uib.jsparklines.data.XYDataPoint getLegendDatasetAFourWay()

Returns the legend location of dataset A in a four way Venn diagram.

Returns:

the legendDatasetAFourWay

setLegendDatasetAFourWay

public void setLegendDatasetAFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetAFourWay)

Set the legend location of Dataset A in a four way Venn diagram.

Parameters:

legendDatasetAFourWay - the legendDatasetAFourWay to set

getLegendDatasetBFourWay

public no.uib.jsparklines.data.XYDataPoint getLegendDatasetBFourWay()

Returns the legend location of dataset B in a four way Venn diagram.

Returns:

the legendDatasetBFourWay

setLegendDatasetBFourWay

public void setLegendDatasetBFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetBFourWay)

Set the legend location of Dataset B in a four way Venn diagram.

Parameters:

legendDatasetBFourWay - the legendDatasetBFourWay to set

getLegendDatasetCFourWay

public no.uib.jsparklines.data.XYDataPoint getLegendDatasetCFourWay()

Returns the legend location of dataset C in a four way Venn diagram.

Returns:

the legendDatasetCFourWay

setLegendDatasetCFourWay

public void setLegendDatasetCFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetCFourWay)

Set the legend location of Dataset C in a four way Venn diagram.

Parameters:

legendDatasetCFourWay - the legendDatasetCFourWay to set

getLegendDatasetDFourWay

public no.uib.jsparklines.data.XYDataPoint getLegendDatasetDFourWay()

Returns the legend location of dataset D in a four way Venn diagram.

Returns:

the legendDatasetDFourWay

setLegendDatasetDFourWay

public void setLegendDatasetDFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetDFourWay)

Set the legend location of Dataset D in a four way Venn diagram.

Parameters:

legendDatasetDFourWay - the legendDatasetDFourWay to set

getCurrentVennDiagramType

public VennDiagramDialog.VennDiagramType getCurrentVennDiagramType()

Returns the current Venn diagram type.

Returns:

the currentVennDiagramType