com.compomics.util.io

Class PklFile

java.lang.Object

com.compomics.util.io.PklFile

public class PklFile
extends java.lang.Object

Contains information about the contents of one PKL file.

Author:

Harald Barsnes

Constructor Summary

Constructors

Constructor and Description
PklFile(java.io.File pklFile) Parse a PKL file and store the details in the PKLFile object.

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.String	getFileName()
double[]	getIntensityValues()
double[]	getMzValues()
int	getPrecurorCharge()
double	getPrecursorIntensity()
double	getPrecursorMz()
java.lang.String	getSpectrumFileId()
void	setFileName(java.lang.String fileName)
void	setIntensityValues(double[] intensityValues)
void	setMzValues(double[] mzValues)
void	setPrecurorCharge(int precurorCharge)
void	setPrecursorIntensity(double precursorIntensity)
void	setPrecursorMz(double precursorMz)
void	setSpectrumFileId(java.lang.String spectrumFileId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PklFile

public PklFile(java.io.File pklFile)
        throws java.io.IOException

Parse a PKL file and store the details in the PKLFile object.

Parameters:

pklFile - the file to parse

Throws:

java.io.IOException

Method Detail

getPrecurorCharge

public int getPrecurorCharge()

Returns:

the precurorCharge

setPrecurorCharge

public void setPrecurorCharge(int precurorCharge)

Parameters:

precurorCharge - the precurorCharge to set

getPrecursorMz

public double getPrecursorMz()

Returns:

the precursorMz

setPrecursorMz

public void setPrecursorMz(double precursorMz)

Parameters:

precursorMz - the precursorMz to set

getPrecursorIntensity

public double getPrecursorIntensity()

Returns:

the precursorIntensity

setPrecursorIntensity

public void setPrecursorIntensity(double precursorIntensity)

Parameters:

precursorIntensity - the precursorIntensity to set

getMzValues

public double[] getMzValues()

Returns:

the mzValues

setMzValues

public void setMzValues(double[] mzValues)

Parameters:

mzValues - the mzValues to set

getIntensityValues

public double[] getIntensityValues()

Returns:

the intensityValues

setIntensityValues

public void setIntensityValues(double[] intensityValues)

Parameters:

intensityValues - the intensityValues to set

getFileName

public java.lang.String getFileName()

Returns:

the fileName

setFileName

public void setFileName(java.lang.String fileName)

Parameters:

fileName - the fileName to set

getSpectrumFileId

public java.lang.String getSpectrumFileId()

Returns:

the spectrumFileId

setSpectrumFileId

public void setSpectrumFileId(java.lang.String spectrumFileId)

Parameters:

spectrumFileId - the spectrumFileId to set