Uses of Package
com.compomics.util.experiment.identification.matches

Packages that use com.compomics.util.experiment.identification.matches

Package	Description
com.compomics.util.experiment.biology	This package contains experiement classes related to biological entities.
com.compomics.util.experiment.identification	This package contains experiment classes related to identifications.
com.compomics.util.experiment.identification.matches	This package contains experiment classes releated to matches.
com.compomics.util.experiment.identification.ptm
com.compomics.util.experiment.identification.ptm.ptmscores
com.compomics.util.experiment.identification.spectrum_annotators
com.compomics.util.experiment.io.identifications
com.compomics.util.experiment.io.identifications.idfilereaders	This package contains experiment classes related to reading search engine files.
com.compomics.util.experiment.massspectrometry	This package contains experiment classes related to spectra.
com.compomics.util.gui.spectrum	This package contains GUI classes related to Spectrum and Chromatogram visualization.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.biology

Class and Description
ModificationMatch This class models the match between theoretic ptm and identification results.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification

Class and Description
IonMatch This class will model the assignment of a peak to a theoretical ion.
PeptideMatch This class models a peptide match.
ProteinMatch This class models a protein match.
SpectrumMatch This class models a spectrum match.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.matches

Class and Description
ModificationMatch This class models the match between theoretic ptm and identification results.
ProteinMatch This class models a protein match.
SpectrumMatch This class models a spectrum match.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.ptm

Class and Description
IonMatch This class will model the assignment of a peak to a theoretical ion.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.ptm.ptmscores

Class and Description
SpectrumMatch This class models a spectrum match.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.identification.spectrum_annotators

Class and Description
IonMatch This class will model the assignment of a peak to a theoretical ion.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.io.identifications

Class and Description
SpectrumMatch This class models a spectrum match.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.io.identifications.idfilereaders

Class and Description
SpectrumMatch This class models a spectrum match.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.experiment.massspectrometry

Class and Description
IonMatch This class will model the assignment of a peak to a theoretical ion.

Classes in com.compomics.util.experiment.identification.matches used by com.compomics.util.gui.spectrum

Class and Description
IonMatch This class will model the assignment of a peak to a theoretical ion.