Uses of Class
com.compomics.util.experiment.identification.ptm.PtmScore

Packages that use PtmScore

Package	Description
com.compomics.util.experiment.identification.ptm
com.compomics.util.preferences

Uses of PtmScore in com.compomics.util.experiment.identification.ptm

Methods in com.compomics.util.experiment.identification.ptm that return PtmScore

Modifier and Type	Method and Description
static PtmScore	PtmScore.getScore(int id) Returns the PTM score indexed by the given id.
static PtmScore	PtmScore.getScore(String name) Returns the PTM score of the given name.
static PtmScore	PtmScore.valueOf(String name) Returns the enum constant of this type with the specified name.
static PtmScore[]	PtmScore.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in com.compomics.util.experiment.identification.ptm that return types with arguments of type PtmScore

Modifier and Type	Method and Description
static ArrayList<PtmScore>	PtmScore.getImplementedPtmScores() Returns a list of the implemented scores.

Uses of PtmScore in com.compomics.util.preferences

Methods in com.compomics.util.preferences that return PtmScore

Modifier and Type	Method and Description
PtmScore	PTMScoringPreferences.getSelectedProbabilisticScore() Returns the selected probabilistic score.

Methods in com.compomics.util.preferences with parameters of type PtmScore

Modifier and Type	Method and Description
void	PTMScoringPreferences.setSelectedProbabilisticScore(PtmScore selectedProbabilisticScore) Sets the selected probabilistic score.